From d32845e557fbe949ed31ec3d0e3b1b0585fd205c Mon Sep 17 00:00:00 2001 From: Vijini Mallawaarachchi Date: Fri, 6 Sep 2024 09:17:29 +0930 Subject: [PATCH] DOC: update paper --- paper/paper.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/paper/paper.md b/paper/paper.md index 72c2142..fae1613 100644 --- a/paper/paper.md +++ b/paper/paper.md @@ -70,9 +70,9 @@ GraphBin-Tk supports metagenome assemblies generated from three popular metageno ## Visualisation -The initial MetaCoAG binning result and the refined binning result can be visualised on the assembly graph using the `visualise` subcommand as shown in \autoref{fig2} for the Sim-5G+metaSPAdes dataset [@Mallawaarachchi2:2020; @Mallawaarachchi:2021]. +The initial MetaCoAG binning result and the refined binning result can be visualised on the assembly graph using the `visualise` subcommand. Users can generate in different formats such as `png`, `eps`, `pdf` and `svg`, and customise the dimensions of the images. An example is shown in \autoref{fig2} for the Sim-5G+metaSPAdes dataset [@Mallawaarachchi2:2020; @Mallawaarachchi:2021] containing five bacterial species. -![Visualisation of the assembly graph with the initial binning result from MetaCoAG (left) and final binning result from GraphBin (right) for the Sim-5G+metaSPAdes dataset containing five bacterial species. The five colours represent the five bins and the white nodes represent unbinned contigs.\label{fig2}](visualisation.png){width=100%} +![Visualisation of the assembly graph with the initial binning result from MetaCoAG (left) and final binning result from GraphBin (right) for the Sim-5G+metaSPAdes dataset. The five colours represent the five bins and the white nodes represent unbinned contigs.\label{fig2}](visualisation.png){width=100%} ## Evaluation