diff --git a/src/main_allelotype.cpp b/src/main_allelotype.cpp index 8169de8..ecb9da9 100644 --- a/src/main_allelotype.cpp +++ b/src/main_allelotype.cpp @@ -91,7 +91,7 @@ void show_help() { << "--realign: Redo local realignment. Useful if using alignments generated\n" << " by other tools.\n" << "--min-het-freq : minimum frequency to make a heterozygous call\n" - << " (default: NULL)\n" + << " (default: 0.1)\n" << "--haploid : comma-separated list of chromosomes\n" << " that should be forced to have homozygous\n" << " calls. Specify --haploid all if the organism\n" diff --git a/src/runtime_parameters.cpp b/src/runtime_parameters.cpp index 947b221..15b7daa 100644 --- a/src/runtime_parameters.cpp +++ b/src/runtime_parameters.cpp @@ -99,7 +99,7 @@ bool rmdup = true; bool include_gl = false; bool dont_include_pl = false; bool print_reads = false; -float min_het_freq = 0; +float min_het_freq = 0.1; int max_matedist = 100000; int maximal_end_match_window = 15; int min_border = 5;