diff --git a/src/deployment/deploy.py b/src/deployment/deploy.py
index 1e3b8d2d5c..d36b64a083 100644
--- a/src/deployment/deploy.py
+++ b/src/deployment/deploy.py
@@ -575,6 +575,17 @@ def upload_tools(self) -> None:
         )
         url = "%s/%s?%s" % (account_url, "tools", sas)
 
+        subprocess.check_output(
+            [
+                self.azcopy,
+                "copy",
+                os.path.join(self.tools, "*"),
+                url,
+                "--overwrite=true",
+                "--recursive=true",
+            ]
+        )
+
         subprocess.check_output(
             [self.azcopy, "sync", self.tools, url, "--delete-destination", "true"]
         )
@@ -603,6 +614,17 @@ def upload_instance_setup(self) -> None:
         )
         url = "%s/%s?%s" % (account_url, "instance-specific-setup", sas)
 
+        subprocess.check_output(
+            [
+                self.azcopy,
+                "copy",
+                os.path.join(self.instance_specific, "*"),
+                url,
+                "--overwrite=true",
+                "--recursive=true",
+            ]
+        )
+
         subprocess.check_output(
             [
                 self.azcopy,
@@ -642,6 +664,17 @@ def upload_third_party(self) -> None:
             )
             url = "%s/%s?%s" % (account_url, name, sas)
 
+            subprocess.check_output(
+                [
+                    self.azcopy,
+                    "copy",
+                    os.path.join(path, "*"),
+                    url,
+                    "--overwrite=true",
+                    "--recursive=true",
+                ]
+            )
+
             subprocess.check_output(
                 [self.azcopy, "sync", path, url, "--delete-destination", "true"]
             )