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Merge branch 'time-compare' into 'development'
Time compare See merge request miracum/dqa/dqagui!3
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| Original file line number | Diff line number | Diff line change |
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| # DQAgui - A graphical user interface (GUI) to the functions implemented in the | ||
| # R package 'DQAstats'. | ||
| # Copyright (C) 2019-2022 Universitätsklinikum Erlangen | ||
| # | ||
| # This program is free software: you can redistribute it and/or modify | ||
| # it under the terms of the GNU General Public License as published by | ||
| # the Free Software Foundation, either version 3 of the License, or | ||
| # (at your option) any later version. | ||
| # | ||
| # This program is distributed in the hope that it will be useful, | ||
| # but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
| # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
| # GNU General Public License for more details. | ||
| # | ||
| # You should have received a copy of the GNU General Public License | ||
| # along with this program. If not, see <http://www.gnu.org/licenses/>. | ||
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| #' @title module_differences_server | ||
| #' | ||
| #' @param input Shiny server input object | ||
| #' @param output Shiny server output object | ||
| #' @param session Shiny session object | ||
| #' @param rv The global 'reactiveValues()' object, defined in server.R | ||
| #' @param input_re The Shiny server input object, wrapped into a reactive | ||
| #' expression: input_re = reactive({input}) | ||
| #' | ||
| #' @return The function returns a shiny server module. | ||
| #' | ||
| #' @seealso \url{https://shiny.rstudio.com/articles/modules.html} | ||
| #' | ||
| #' @examples | ||
| #' if (interactive()) { | ||
| #' rv <- list() | ||
| #' shiny::callModule( | ||
| #' module_differences_server, | ||
| #' "moduleDifferences", | ||
| #' rv = rv, | ||
| #' input_re = reactive(input) | ||
| #' ) | ||
| #' } | ||
| #' | ||
| #' @export | ||
| #' | ||
| # module_differences_server | ||
| module_differences_server <- | ||
| function(input, output, session, rv, input_re) { | ||
| observe({ | ||
| req(rv$time_compare_results) | ||
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| # render select input here | ||
| output$descr_selection_uiout <- renderUI({ | ||
| selectInput( | ||
| inputId = "moduleDifferences-var_select", | ||
| label = "Select variable", | ||
| choices = names(rv$time_compare_results), | ||
| multiple = FALSE, | ||
| selectize = FALSE, | ||
| size = 10 | ||
| ) | ||
| }) | ||
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| output$source_database <- renderText({ | ||
| paste0("Source Data (", rv$source$system_name, ")") | ||
| }) | ||
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| output$target_database <- renderText({ | ||
| paste0("Target Data (", rv$target$system_name, ")") | ||
| }) | ||
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| # generate output tables | ||
| observeEvent(input_re()[["moduleDifferences-var_select"]], { | ||
| cat(input_re()[["moduleDifferences-var_select"]], "\n") | ||
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| sel_ob <- input_re()[["moduleDifferences-var_select"]] | ||
| # get description object | ||
| desc_out <- rv$results_descriptive[[sel_ob]]$description | ||
| summary_out <- rv$time_compare_results[[sel_ob]]$result_table | ||
| count_out <- rv$results_descriptive[[sel_ob]]$counts | ||
| target_out <- rv$time_compare_results[[sel_ob]]$suspect_data_target | ||
| source_out <- rv$time_compare_results[[sel_ob]]$suspect_data_source | ||
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| value_conf <- rv$conformance$value_conformance[[sel_ob]] | ||
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| output$descr_description <- renderTable({ | ||
| summary_out | ||
| }) | ||
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| # render source statistics | ||
| output$descr_selection_source_table <- renderTable({ | ||
| source_out | ||
| } | ||
| ) | ||
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| # render target statistics | ||
| output$descr_selection_target_table <- renderTable({ | ||
| target_out | ||
| }) | ||
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| # handling the download options | ||
| output$download_data <- downloadHandler( | ||
| filename = function() { | ||
| time <- format(Sys.time(), "%Y_%m_%d_%H_%M") | ||
| paste("DQA-Difference-Data-", time, ".rds", sep = "") | ||
| }, | ||
| content = function(file) { | ||
| difference_results <- list() | ||
| difference_results$source <- rv$source$system_name | ||
| difference_results$target <- rv$target$system_name | ||
| difference_results$time_restriction <- rv$restricting_date | ||
| difference_results$start_time <- rv$start_time | ||
| difference_results$time_compare_results <- rv$time_compare_results | ||
| saveRDS(difference_results, file) | ||
| }, | ||
| contentType = "application/rds" | ||
| ) | ||
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| output$download_source <- downloadHandler( | ||
| filename = function() { | ||
| time <- format(Sys.time(), "%Y_%m_%d_%H_%M") | ||
| paste("Diff-source-",sel_ob ,time , ".csv", sep = "") | ||
| }, | ||
| content = function(file) { | ||
| write.csv(source_out, file, row.names = FALSE) | ||
| }, | ||
| contentType = "text/csv" | ||
| ) | ||
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| output$download_target <- downloadHandler( | ||
| filename = function() { | ||
| time <- format(Sys.time(), "%Y_%m_%d_%H_%M") | ||
| paste("Diff-target-",sel_ob ,time , ".csv", sep = "") | ||
| }, | ||
| content = function(file) { | ||
| write.csv(target_out, file, row.names = FALSE) | ||
| }, | ||
| contentType = "text/csv" | ||
| ) | ||
| }) | ||
| }) | ||
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| } | ||
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| #' @title module_differences_ui | ||
| #' | ||
| #' @param id A character. The identifier of the shiny object | ||
| #' | ||
| #' @return The function returns a shiny ui module. | ||
| #' | ||
| #' @seealso \url{https://shiny.rstudio.com/articles/modules.html} | ||
| #' | ||
| #' @examples | ||
| #' if (interactive()) { | ||
| #' shinydashboard::tabItems( | ||
| #' shinydashboard::tabItem( | ||
| #' tabName = "differences", | ||
| #' module_differences_ui( | ||
| #' "moduleDifferences" | ||
| #' ) | ||
| #' ) | ||
| #' ) | ||
| #' } | ||
| #' | ||
| #' @export | ||
| #' | ||
| # module_differences_ui | ||
| module_differences_ui <- function(id) { | ||
| ns <- NS(id) | ||
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| tagList( | ||
| fluidRow( | ||
| box(title = "Select variable", | ||
| uiOutput(ns("descr_selection_uiout")), | ||
| width = 4), | ||
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| box(title = "Summary", | ||
| style = "height: 300px; overflow-y: scroll;", | ||
| htmlOutput(ns("descr_description")), | ||
| width = 8) | ||
| ), | ||
| fluidRow( | ||
| box( | ||
| width = 4, | ||
| "If the available resources for a given TIMESTAMP", | ||
| "differ, it is likely that a resource is missing in either the source", | ||
| "or the target database. The following tables contain all resources", | ||
| "with differences in their TIMESTAMP count." | ||
| ), | ||
| box( | ||
| width = 8, | ||
| column( | ||
| width = 6, | ||
| "The .pdf report contains only the first 25 lines ", | ||
| "of the summary table. You can download the shown source or target", | ||
| "result-table as .csv file. Or you can download all results ", | ||
| "including some metadata as .rds file for further analysis in R." | ||
| ), | ||
| column( | ||
| width = 2, | ||
| downloadButton( | ||
| ns("download_data"), "All (.rds)" | ||
| ) | ||
| ), | ||
| column( | ||
| width = 4, | ||
| downloadButton( | ||
| ns("download_source"), "Source Data (.csv)", | ||
| style = "width: 140px; margin-bottom: 6px;" | ||
| ), | ||
| tags$br(), | ||
| downloadButton( | ||
| ns("download_target"), "Target Data (.csv)", | ||
| style = "width: 140px;" | ||
| ) | ||
| ) | ||
| ) | ||
| ), | ||
| fluidRow( | ||
| box( | ||
| title = textOutput(ns("source_database")), | ||
| width = 6, | ||
| style = "overflow-x: scroll; overflow-y: scroll; height: 600px;", | ||
| tableOutput( | ||
| ns("descr_selection_source_table")) | ||
| ), | ||
| box( | ||
| title = textOutput(ns("target_database")), | ||
| width = 6, | ||
| style = "overflow-X: scroll; overflow-y: scroll; height: 600px;", | ||
| tableOutput( | ||
| ns("descr_selection_target_table")) | ||
| ) | ||
| )) | ||
| } |
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