Try to fix ICA Report #2310
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: 'Tests' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| on: # yamllint disable-line rule:truthy | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| permissions: | |
| contents: read | |
| jobs: | |
| style: | |
| name: Style | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 3 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - uses: psf/black@stable | |
| - uses: pre-commit/action@v3.0.0 | |
| bandit: | |
| name: Bandit | |
| needs: style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: davidslusser/actions_python_bandit@v1.0.0 | |
| with: | |
| src: "mne" | |
| options: "-c pyproject.toml -ll -r" | |
| pip_install_command: "pip install bandit[toml]" | |
| pytest: | |
| name: '${{ matrix.os }} / ${{ matrix.kind }} / ${{ matrix.python }}' | |
| needs: style | |
| timeout-minutes: 70 | |
| continue-on-error: true | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| PYTHON_VERSION: '${{ matrix.python }}' | |
| MKL_NUM_THREADS: '1' | |
| OPENBLAS_NUM_THREADS: '1' | |
| PYTHONUNBUFFERED: '1' | |
| MNE_CI_KIND: '${{ matrix.kind }}' | |
| CI_OS_NAME: '${{ matrix.os }}' | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python: '3.10' | |
| kind: conda | |
| - os: ubuntu-latest | |
| python: '3.10' | |
| kind: notebook | |
| - os: ubuntu-latest | |
| python: '3.11' | |
| kind: pip-pre | |
| - os: macos-latest | |
| python: '3.8' | |
| kind: mamba | |
| - os: windows-latest | |
| python: '3.10' | |
| kind: mamba | |
| - os: ubuntu-latest | |
| python: '3.8' | |
| kind: minimal | |
| - os: ubuntu-20.04 | |
| python: '3.8' | |
| kind: old | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - run: ./tools/github_actions_env_vars.sh | |
| # Xvfb/OpenGL | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| pyvista: false | |
| if: matrix.kind != 'notebook' | |
| # Python (if pip) | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| if: startswith(matrix.kind, 'pip') | |
| # Python (if conda) | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| environment-file: ${{ env.CONDA_ENV }} | |
| activate-environment: mne | |
| miniforge-version: latest | |
| miniforge-variant: Mambaforge | |
| use-mamba: ${{ matrix.kind != 'conda' }} | |
| if: ${{ !startswith(matrix.kind, 'pip') }} | |
| - name: 'Install OSMesa VTK variant' | |
| run: | | |
| # TODO: As of 2023/02/28, notebook tests need a pinned mesalib | |
| mamba install -c conda-forge "vtk>=9.2=*osmesa*" "vtk-base>=9.2=*osmesa*" "mesalib=23.1.4" | |
| mamba list | |
| if: matrix.kind == 'notebook' | |
| - run: ./tools/github_actions_dependencies.sh | |
| # Minimal commands on Linux (macOS stalls) | |
| - run: ./tools/get_minimal_commands.sh | |
| if: ${{ startswith(matrix.os, 'ubuntu') }} | |
| - run: ./tools/github_actions_install.sh | |
| - run: ./tools/github_actions_infos.sh | |
| # Check Qt on non-notebook | |
| - run: ./tools/check_qt_import.sh $MNE_QT_BACKEND | |
| if: ${{ env.MNE_QT_BACKEND != '' }} | |
| - name: Run tests with no testing data | |
| run: MNE_SKIP_TESTING_DATASET_TESTS=true pytest -m "not (ultraslowtest or pgtest)" --tb=short --cov=mne --cov-report xml -vv -rfE mne/ | |
| if: matrix.kind == 'minimal' | |
| - run: ./tools/get_testing_version.sh | |
| - uses: actions/cache@v3 | |
| with: | |
| key: ${{ env.TESTING_VERSION }} | |
| path: ~/mne_data | |
| - run: ./tools/github_actions_download.sh | |
| - run: ./tools/github_actions_test.sh | |
| - uses: codecov/codecov-action@v3 | |
| if: success() |