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Time-frequency in Source Space#6629

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DiGyt wants to merge 101 commits intomne-tools:mainmne-tools/mne-python:mainfrom DiGyt:source_into_tfrDiGyt/mne-python:source_into_tfrCopy head branch name to clipboard

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Commits

Commits on Jun 6, 2019

• Added SourceTFR

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• Added SourceTFR

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• Added multitaper test

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Commits on Jun 10, 2019

• added test

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• Read SourceEstimates into multitaper

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• Merge branch 'SourceTFR' into source_multitaper

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Commits on Jun 13, 2019

• tfr_multitaper now takes VectorSourceEstimates without error

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Commits on Jun 19, 2019

• updated SourceTFR with multitaper and morlet

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Commits on Jun 28, 2019

• updated source tfr

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• Merge https://github.com/mne-tools/mne-python into source_multit_wavelet

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Commits on Jul 3, 2019

• added tests four SourceTFR

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• fixed some stuff

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Commits on Jul 7, 2019

• Added Tests for source_tfr

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Commits on Jul 9, 2019

• Made tfr(VectorSourceEstimate) and source_induced_power more equivalent

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Commits on Jul 12, 2019

• Merge https://github.com/mne-tools/mne-python into source_multit_wavelet

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• Merge https://github.com/mne-tools/mne-python into source_multit_wavelet

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Commits on Jul 13, 2019

• Tried to improve equivalence between morlet and source_induced_poewr

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Commits on Jul 15, 2019

• made one equivalent case for tfr_morlet and source_induced_power

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Commits on Jul 16, 2019

• add full_data param to apply_inverse_epochs

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• cleaned up time_frequency

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• updated minimum_norm.time_frequency

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Commits on Jul 19, 2019

• adapted tfr_morlet(SourceEstimate) to source_induced_poewr

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Commits on Jul 24, 2019

• prepared morlet, multitaper and stockwell for SourceEstimates

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Commits on Jul 26, 2019

• enhanced tests for tfr

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Commits on Jul 29, 2019

• read stc lists into tfr_functions

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Commits on Jul 31, 2019

• improved reading lists into tfr

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Commits on Aug 1, 2019

• update to Kernel param for apply inverse branch

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Commits on Aug 2, 2019

• tfr_aux works now for everything

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• removed unused test

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• stockwell works now with lists, itc

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Commits on Aug 3, 2019

• cleaned up _tfr_loop_list

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• improved and parametrized tests, fixed bugs

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• added some tests for source_tfr

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Commits on Aug 4, 2019

• added Docstrings

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• Merge https://github.com/mne-tools/mne-python into source_into_tfr

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• corrected flake, pydocstyle

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Commits on Aug 5, 2019

• corrected connectivity

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• removed uneccesary format

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• changed some format diffs from master

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• cleaned up SourceTFR + SourceTFR tests...

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• fixed pep & pydocstyle

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• Merge https://github.com/mne-tools/mne-python into source_into_tfr

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• WIP: avoid modifying the doc

  

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Commits on Aug 6, 2019

• Merge https://github.com/mne-tools/mne-python into source_into_tfr

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• first review corrections

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• revert unedited files #1

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• revert unedited files #2

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• revert unedited files mne-tools#3

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• revert unedited files mne-tools#4

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• reverting _brain.py manually

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• reverting view.py manually

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• reverting epochs.py manually

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• reverting raw.py manually

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• reverting utils.py manually

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• reverting plot_10_raw_overview.py manually

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Commits on Aug 9, 2019

• tried to refactor _tfr_aux

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• set source_estimate to master to evade conflicts

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• Merge https://github.com/mne-tools/mne-python into source_into_tfr

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• adapted source_estimate to changes in kernel_param_for_apply_inverse

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• flake, pydocstyle

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Commits on Aug 12, 2019

• refactored _tfr_loop_list

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• introduced docs for _tfr_loop_list

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• removed old doc in _tfr_loop_list

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Commits on Aug 15, 2019

• Added SourceTFR to python_reference.rst

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• added SourceTFR to init.py

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• try to fix SourceTFR reference Error

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Commits on Aug 16, 2019

• try to fix SourceTFR verbose doc

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• try fixing missing reference for circle ci

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• updated what's new

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• Merge remote-tracking branch 'origin/source_into_tfr' into source_into_tfr

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• reverted df75c14

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Commits on Aug 18, 2019

• Merge https://github.com/mne-tools/mne-python into source_into_tfr

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• reupdated whatsnew/ addded SourceTFR to conf.py

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• implemented faster cwt computation

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• added test param for 'delayed=True' case equivalence

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• removed outdated comment

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• fix flake

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Commits on Aug 20, 2019

• Enable tfr_stockwell to process lists/generators subsequently

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• enabling tfr_stockwell to compute lists/gens subsequently

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• changed tests to also cover kernelized data

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• removed delayed tests from test_morlet_induced_power...

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• compute tfr_stockwell only on sensor data

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Commits on Aug 21, 2019

• flake, pydocstyle

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• refactor stockwell functions

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• small improvements

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• more small improvements

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• renamed testing check function

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Commits on Aug 22, 2019

• Merge https://github.com/mne-tools/mne-python into source_into_tfr

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• use random state instead of random seed

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• changed sourceTFR data docstring/comments

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• added authur + licensing

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• manually merged what's new / changes

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• changed indentation in docstring

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Commits on Aug 25, 2019

• Merge branch 'master' into source_into_tfr

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Commits on Aug 30, 2019

• fixed vertices function in order to avoid __repr__ and plotting error

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• Merge branch 'master' into source_into_tfr

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• Merge https://github.com/mne-tools/mne-python into source_into_tfr

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• fix flake

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Commits on Sep 3, 2019

• Merge https://github.com/mne-tools/mne-python into source_into_tfr

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• migrated source_tfr...

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• not load SourceTFR in time_frequency.__init__

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