MRG, BUG: Fix bug with volume morph and subject_to!="fsaverage" #7896
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
larsoner
changed the title
|
Okay this one should be good to go. I noticed that the volumetric morphing has an issue where the edge voxel values do not round-trip to 1. because of the reslicing / interpolation steps using linear interpolation, but I'm not sure that there is a good way around this. That's a problem on |
|
@larsoner any idea why the CIs are failing? |
|
Just timeouts that should be fixed by #7904, this should be good to review |
|
thx @larsoner |
larsoner
added a commit
to larsoner/mne-python
that referenced
this pull request
Jun 23, 2020
* upstream/master: MRG, ENH: Add method to project onto max power ori (mne-tools#7883) WIP: Warn if untested NIRX device (mne-tools#7905) MRG, BUG: Fix bug with volume morph and subject_to!="fsaverage" (mne-tools#7896) MRG, MAINT: Clean up use of bool, float, int (mne-tools#7917) ENH: Better error message for incompatible Evoked objects (mne-tools#7910) try to fix nullcontext (mne-tools#7908)
larsoner
added a commit
to larsoner/mne-python
that referenced
this pull request
Jun 25, 2020
* upstream/master: (23 commits) MAINT: Add mne.surface to docstring tests (mne-tools#7930) MRG: Add smoothing controller to TimeViewer for the notebook backend (mne-tools#7928) MRG: TimeViewer matplotlib figure color (mne-tools#7925) fix typos (mne-tools#7924) MRG, ENH: Add method to project onto max power ori (mne-tools#7883) WIP: Warn if untested NIRX device (mne-tools#7905) MRG, BUG: Fix bug with volume morph and subject_to!="fsaverage" (mne-tools#7896) MRG, MAINT: Clean up use of bool, float, int (mne-tools#7917) ENH: Better error message for incompatible Evoked objects (mne-tools#7910) try to fix nullcontext (mne-tools#7908) WIP: Fix Travis (mne-tools#7906) WIP: Prototype of notebook viz (screencast) (mne-tools#7758) MRG, FIX: Speed up I/O tests, mark some slow (mne-tools#7904) Proper attribution for Blender tutorial (mne-tools#7900) MAINT: Check usage [ci skip] (mne-tools#7902) Allow find_bad_channels_maxwell() to return scores (mne-tools#7845) Warn if NIRx directory structure has been modified from original format (mne-tools#7898) Pin pvyista to 0.24.3 (mne-tools#7899) MRG: Add support for reading and writing sufaces to .obj (mne-tools#7824) Fix _auto_topomap_coords docstring. (mne-tools#7895) ...
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
We had a bug where
src_todid not work when the MRI and RAS coordinate frames were not identical. Fortunately they are for fsaverage (hopefully by far the most common destination subject), unfortunately I have never seen them be identical for any other FreeSurfer subject (hopefully a rare destination use case).WIP because
using non-fsaverage subjects is still not totally satisfactory (though they at least now are more reasonable instead of all zero), want to see if there is anything to fix or if it's just a parameter problem at my end.: