From 115b814525d889411b23d04606ea4e4141ffc80a Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Mon, 21 Aug 2023 13:19:55 +0100 Subject: [PATCH 01/19] update pyroject to allow poetry to install all spark requirements --- pyproject.toml | 5 +++++ scripts/test_poetry_build.sh | 3 ++- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index c8e5df210d..80bef805df 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,6 +13,7 @@ python = ">=3.7,<4.0.0" jsonschema = ">=3.2,<5.0" pandas = ">=1.0.0" duckdb = ">=0.8.0" +pyspark = {version="^3.2.1", optional=true} # normalize issue in sqlglot - temporarily exclude updates sqlglot = ">=7.0.0,<11.4.2" altair = "^5.0.1" @@ -56,6 +57,10 @@ nbmake = "1.3.4" pytest = "^7.0" pyspark = "^3.2.1" +[tool.poetry.extras] +pyspark = ["pyspark"] +spark = ["pyspark"] + [build-system] requires = ["poetry-core>=1.0.8"] build-backend = "poetry.core.masonry.api" diff --git a/scripts/test_poetry_build.sh b/scripts/test_poetry_build.sh index ff2a29bde9..d8cb57a0fb 100644 --- a/scripts/test_poetry_build.sh +++ b/scripts/test_poetry_build.sh @@ -15,4 +15,5 @@ folder_path="dist" # Use find command to get paths of all .whl files within the folder whl_files=$(find "$folder_path" -type f -name "*.whl") # pip install -pip3 install "$whl_files" +# pip3 install "$whl_files" +pip3 install $whl_files'[spark]' \ No newline at end of file From e45f5fd6b12c71e9a8110df85fa509b11eed8a3d Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Tue, 22 Aug 2023 14:04:14 +0100 Subject: [PATCH 02/19] Add support for postgres and athena --- pyproject.toml | 5 +++++ scripts/test_poetry_build.sh | 3 ++- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 80bef805df..37f4afa8bb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,6 +14,9 @@ jsonschema = ">=3.2,<5.0" pandas = ">=1.0.0" duckdb = ">=0.8.0" pyspark = {version="^3.2.1", optional=true} +awswrangler = {version="^3.0.0", optional=true} +psycopg2-binary = {version=">=2.8.0", optional=true} +sqlalchemy = {version=">=1.4.0,<2.0.0", optional=true} # normalize issue in sqlglot - temporarily exclude updates sqlglot = ">=7.0.0,<11.4.2" altair = "^5.0.1" @@ -60,6 +63,8 @@ pyspark = "^3.2.1" [tool.poetry.extras] pyspark = ["pyspark"] spark = ["pyspark"] +athena = ["awswrangler"] +postgres = ["sqlalchemy", "psycopg2-binary"] [build-system] requires = ["poetry-core>=1.0.8"] diff --git a/scripts/test_poetry_build.sh b/scripts/test_poetry_build.sh index d8cb57a0fb..9916707f76 100644 --- a/scripts/test_poetry_build.sh +++ b/scripts/test_poetry_build.sh @@ -16,4 +16,5 @@ folder_path="dist" whl_files=$(find "$folder_path" -type f -name "*.whl") # pip install # pip3 install "$whl_files" -pip3 install $whl_files'[spark]' \ No newline at end of file +# pip3 install $whl_files'[spark]' +pip3 install $whl_files'[postgres]' \ No newline at end of file From 1b5a2c09f46192f80b731cff4d52dd9a170ae2c8 Mon Sep 17 00:00:00 2001 From: Tom Hepworth <45356472+ThomasHepworth@users.noreply.github.com> Date: Tue, 22 Aug 2023 14:28:09 +0100 Subject: [PATCH 03/19] add backend installs to the README --- README.md | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/README.md b/README.md index 4779e7ae2b..607387cae2 100644 --- a/README.md +++ b/README.md @@ -70,6 +70,33 @@ or, if you prefer, you can instead install splink using conda: conda install -c conda-forge splink ``` +#### Backend Specific Installs + +From Splink v3.9.7, you can now install the required packages for a specific splink backend by adding the `[]` to the end of your `pip install`. + +
+The following backends are supported: + +
+ +**Spark** +```sh +pip install 'splink[spark]' +``` + +**Athena** +```sh +pip install 'splink[athena]' +``` + +**PostgreSQL** +```sh +pip install 'splink[postgres]' +``` +
+ + +#### DuckDBLess Splink Should you require a more bare-bones version of Splink **without DuckDB**, please see the following area of the docs: > [DuckDBless Splink Installation](https://moj-analytical-services.github.io/splink/installations.html#duckdb-less-installation) From 6ac91ebbabf11f70cda7e05da2810d652f64a043 Mon Sep 17 00:00:00 2001 From: Tom Hepworth <45356472+ThomasHepworth@users.noreply.github.com> Date: Tue, 22 Aug 2023 14:36:36 +0100 Subject: [PATCH 04/19] version -> backend --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 607387cae2..58a1fcdf5f 100644 --- a/README.md +++ b/README.md @@ -72,7 +72,7 @@ conda install -c conda-forge splink #### Backend Specific Installs -From Splink v3.9.7, you can now install the required packages for a specific splink backend by adding the `[]` to the end of your `pip install`. +From Splink v3.9.7, you can now install the required packages for a specific splink backend by adding the `[]` to the end of your `pip install`.
The following backends are supported: From 2c297ec08b136077a25615ef5a9d7cf5c4b1d793 Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Tue, 22 Aug 2023 14:57:04 +0100 Subject: [PATCH 05/19] add backend specific install notes to `getting_started` --- docs/getting_started.md | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/docs/getting_started.md b/docs/getting_started.md index e2052de3cf..79351b9eae 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -18,6 +18,29 @@ or if you prefer, you can instead install splink using conda: conda install -c conda-forge splink ``` +??? "Backend Specific Installs" + ### Backend Specific Installs + From Splink v3.9.7, packages required by specific splink backends can be optionally installed by adding the `[]` suffix to the end of your pip install. + + **Note** that SQLite and DuckDB come packaged with Splink and cannot be optionally installed. + + The following backends are supported: + + === ":simple-apachespark: Spark" + ```sh + pip install 'splink[spark]' + ``` + + === ":simple-amazonaws: Athena" + ```sh + pip install 'splink[athena]' + ``` + + === ":simple-postgresql: PostgreSql" + ```sh + pip install 'splink[postgres]' + ``` + ??? "DuckDB-less Installation" ### DuckDB-less Installation Should you be unable to install `DuckDB` to your local machine, you can still run `Splink` without the `DuckDB` dependency using a small workaround. From e529c6a54ad89ba48c15303a602c326e627d3731 Mon Sep 17 00:00:00 2001 From: Tom Hepworth <45356472+ThomasHepworth@users.noreply.github.com> Date: Tue, 22 Aug 2023 14:59:34 +0100 Subject: [PATCH 06/19] Update README with notes on how to install packages for different backends --- README.md | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 58a1fcdf5f..666cb7de82 100644 --- a/README.md +++ b/README.md @@ -70,15 +70,17 @@ or, if you prefer, you can instead install splink using conda: conda install -c conda-forge splink ``` -#### Backend Specific Installs - -From Splink v3.9.7, you can now install the required packages for a specific splink backend by adding the `[]` to the end of your `pip install`. -
-The following backends are supported: +Backend Specific Installs
+From Splink v3.9.7, packages required by specific splink backends can be optionally installed by adding the `[]` suffix to the end of your `pip install`. + +**Note** - As SQLite and DuckDB come packaged with Splink, they cannot be optionally installed. + +Backends supported by optional installs: + **Spark** ```sh pip install 'splink[spark]' From 84093e28d894ded961b315d892dfa39698c0dbe5 Mon Sep 17 00:00:00 2001 From: Ross Kennedy Date: Mon, 4 Sep 2023 17:37:17 +0100 Subject: [PATCH 07/19] indent getting started --- docs/getting_started.md | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/docs/getting_started.md b/docs/getting_started.md index 79351b9eae..fbfebdb291 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -27,19 +27,19 @@ conda install -c conda-forge splink The following backends are supported: === ":simple-apachespark: Spark" - ```sh - pip install 'splink[spark]' - ``` + ```sh + pip install 'splink[spark]' + ``` === ":simple-amazonaws: Athena" - ```sh - pip install 'splink[athena]' - ``` + ```sh + pip install 'splink[athena]' + ``` === ":simple-postgresql: PostgreSql" - ```sh - pip install 'splink[postgres]' - ``` + ```sh + pip install 'splink[postgres]' + ``` ??? "DuckDB-less Installation" ### DuckDB-less Installation From 7fc562b0c932f3a1a94f93c600b632dd0f28dcdd Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Tue, 12 Sep 2023 14:08:09 +0100 Subject: [PATCH 08/19] drop support for py 3.7 --- pyproject.toml | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 37f4afa8bb..f092a4a6e6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,12 +9,12 @@ repository = "https://github.com/moj-analytical-services/splink" readme = "README.md" [tool.poetry.dependencies] -python = ">=3.7,<4.0.0" +python = ">=3.8,<4.0.0" jsonschema = ">=3.2,<5.0" -pandas = ">=1.0.0" +pandas = ">=1.2.0" duckdb = ">=0.8.0" pyspark = {version="^3.2.1", optional=true} -awswrangler = {version="^3.0.0", optional=true} +awswrangler = {version=">=3.0.0,<4.0.0", optional=true} psycopg2-binary = {version=">=2.8.0", optional=true} sqlalchemy = {version=">=1.4.0,<2.0.0", optional=true} # normalize issue in sqlglot - temporarily exclude updates @@ -54,7 +54,7 @@ lzstring = "1.0.4" [tool.poetry.group.demos.dependencies] importlib-resources = "5.4.0" jupyterlab = "3.6.1" -pyarrow = "7.0.0" +pyarrow = "^7.0.0" ipywidgets = "8.0.4" nbmake = "1.3.4" pytest = "^7.0" @@ -63,7 +63,6 @@ pyspark = "^3.2.1" [tool.poetry.extras] pyspark = ["pyspark"] spark = ["pyspark"] -athena = ["awswrangler"] postgres = ["sqlalchemy", "psycopg2-binary"] [build-system] From e7dbf3ed4a9a98137015690ff05de9197f41b81b Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Tue, 12 Sep 2023 14:12:54 +0100 Subject: [PATCH 09/19] adjust tests to run on py 3.8 and up --- .github/workflows/pytest_postgres.yml | 2 +- .github/workflows/pytest_run_tests_with_cache.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pytest_postgres.yml b/.github/workflows/pytest_postgres.yml index fca422a655..1bf9fc751a 100644 --- a/.github/workflows/pytest_postgres.yml +++ b/.github/workflows/pytest_postgres.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-20.04 strategy: matrix: - python-version: [ "3.7.15", "3.8.16", "3.9.10" ] + python-version: [ "3.8.16", "3.9.10" ] services: pg_splink_ci: image: postgres diff --git a/.github/workflows/pytest_run_tests_with_cache.yml b/.github/workflows/pytest_run_tests_with_cache.yml index 0ef61ff953..fac3083151 100644 --- a/.github/workflows/pytest_run_tests_with_cache.yml +++ b/.github/workflows/pytest_run_tests_with_cache.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-20.04 strategy: matrix: - python-version: [ "3.7.15", "3.8.16", "3.9.10" ] + python-version: [ "3.8.16", "3.9.10" ] name: Run tests with python verion ${{ matrix.python-version }} steps: #---------------------------------------------- From d09d1bc59d1b56159496a2212fc2ecbe75e43617 Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Tue, 12 Sep 2023 14:13:18 +0100 Subject: [PATCH 10/19] update lock file --- poetry.lock | 1426 +++++++++++++++++++++++++++++++-------------------- 1 file changed, 864 insertions(+), 562 deletions(-) diff --git a/poetry.lock b/poetry.lock index 62742b558e..b63f6549c1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -24,60 +24,56 @@ files = [ {file = "aiosqlite-0.19.0.tar.gz", hash = "sha256:95ee77b91c8d2808bd08a59fbebf66270e9090c3d92ffbf260dc0db0b979577d"}, ] -[package.dependencies] -typing_extensions = {version = ">=4.0", markers = "python_version < \"3.8\""} - [package.extras] dev = ["aiounittest (==1.4.1)", "attribution (==1.6.2)", "black (==23.3.0)", "coverage[toml] (==7.2.3)", "flake8 (==5.0.4)", "flake8-bugbear (==23.3.12)", "flit (==3.7.1)", "mypy (==1.2.0)", "ufmt (==2.1.0)", "usort (==1.0.6)"] docs = ["sphinx (==6.1.3)", "sphinx-mdinclude (==0.5.3)"] [[package]] name = "altair" -version = "5.0.1" +version = "5.1.1" description = "Vega-Altair: A declarative statistical visualization library for Python." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "altair-5.0.1-py3-none-any.whl", hash = "sha256:9f3552ed5497d4dfc14cf48a76141d8c29ee56eae2873481b4b28134268c9bbe"}, - {file = "altair-5.0.1.tar.gz", hash = "sha256:087d7033cb2d6c228493a053e12613058a5d47faf6a36aea3ff60305fd8b4cb0"}, + {file = "altair-5.1.1-py3-none-any.whl", hash = "sha256:bb421459b53c80ad45f2bd009c87da2a81165b8f7d5a90658e0fc1ffc741bf34"}, + {file = "altair-5.1.1.tar.gz", hash = "sha256:ad6cd6983c8db69a34dd68e42653f6172b7fc3775b7190005107f1b4fc60d64d"}, ] [package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} jinja2 = "*" jsonschema = ">=3.0" numpy = "*" -pandas = ">=0.18" +packaging = "*" +pandas = ">=0.25" toolz = "*" typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""} [package.extras] -dev = ["black (<24)", "hatch", "ipython", "m2r", "mypy", "pandas-stubs", "pytest", "pytest-cov", "ruff", "types-jsonschema", "types-setuptools", "vega-datasets", "vl-convert-python"] -doc = ["docutils", "geopandas", "jinja2", "myst-parser", "numpydoc", "pillow", "pydata-sphinx-theme", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinxext-altair"] +dev = ["anywidget", "black (<24)", "hatch", "ipython", "m2r", "mypy", "pandas-stubs", "pyarrow (>=11)", "pytest", "pytest-cov", "ruff", "types-jsonschema", "types-setuptools", "vega-datasets", "vegafusion[embed] (>=1.4.0)", "vl-convert-python (>=0.13.0)"] +doc = ["docutils", "geopandas", "jinja2", "myst-parser", "numpydoc", "pillow (>=9,<10)", "pydata-sphinx-theme", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinxext-altair"] [[package]] name = "anyio" -version = "3.7.1" +version = "4.0.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "anyio-3.7.1-py3-none-any.whl", hash = "sha256:91dee416e570e92c64041bd18b900d1d6fa78dff7048769ce5ac5ddad004fbb5"}, - {file = "anyio-3.7.1.tar.gz", hash = "sha256:44a3c9aba0f5defa43261a8b3efb97891f2bd7d804e0e1f56419befa1adfc780"}, + {file = "anyio-4.0.0-py3-none-any.whl", hash = "sha256:cfdb2b588b9fc25ede96d8db56ed50848b0b649dca3dd1df0b11f683bb9e0b5f"}, + {file = "anyio-4.0.0.tar.gz", hash = "sha256:f7ed51751b2c2add651e5747c891b47e26d2a21be5d32d9311dfe9692f3e5d7a"}, ] [package.dependencies] -exceptiongroup = {version = "*", markers = "python_version < \"3.11\""} +exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""} idna = ">=2.8" sniffio = ">=1.1" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -doc = ["Sphinx", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.2.2)", "sphinxcontrib-jquery"] -test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] -trio = ["trio (<0.22)"] +doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] +trio = ["trio (>=0.22)"] [[package]] name = "appnope" @@ -93,24 +89,24 @@ files = [ [[package]] name = "argon2-cffi" -version = "21.3.0" -description = "The secure Argon2 password hashing algorithm." +version = "23.1.0" +description = "Argon2 for Python" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" files = [ - {file = "argon2-cffi-21.3.0.tar.gz", hash = "sha256:d384164d944190a7dd7ef22c6aa3ff197da12962bd04b17f64d4e93d934dba5b"}, - {file = "argon2_cffi-21.3.0-py3-none-any.whl", hash = "sha256:8c976986f2c5c0e5000919e6de187906cfd81fb1c72bf9d88c01177e77da7f80"}, + {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"}, + {file = "argon2_cffi-23.1.0.tar.gz", hash = "sha256:879c3e79a2729ce768ebb7d36d4609e3a78a4ca2ec3a9f12286ca057e3d0db08"}, ] [package.dependencies] argon2-cffi-bindings = "*" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -dev = ["cogapp", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "pre-commit", "pytest", "sphinx", "sphinx-notfound-page", "tomli"] -docs = ["furo", "sphinx", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] +dev = ["argon2-cffi[tests,typing]", "tox (>4)"] +docs = ["furo", "myst-parser", "sphinx", "sphinx-copybutton", "sphinx-notfound-page"] +tests = ["hypothesis", "pytest"] +typing = ["mypy"] [[package]] name = "argon2-cffi-bindings" @@ -164,7 +160,24 @@ files = [ [package.dependencies] python-dateutil = ">=2.7.0" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} + +[[package]] +name = "asttokens" +version = "2.4.0" +description = "Annotate AST trees with source code positions" +category = "dev" +optional 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+[extras] +postgres = ["psycopg2-binary", "sqlalchemy"] +pyspark = ["pyspark"] +spark = ["pyspark"] [metadata] lock-version = "2.0" -python-versions = ">=3.7,<4.0.0" -content-hash = "d2c6386aaed749847b5c0a71bbc45d82303076ff71154b7806454c644c022fbd" +python-versions = ">=3.8,<4.0.0" +content-hash = "93618063d3842023bde4597b5ef65529988b90e1e3a6283e541c116cd6274457" From c3eeca15777f490145ea1cdba8141547dcbcfa41 Mon Sep 17 00:00:00 2001 From: Tom Hepworth <45356472+ThomasHepworth@users.noreply.github.com> Date: Tue, 12 Sep 2023 14:17:48 +0100 Subject: [PATCH 11/19] add athena install --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index f092a4a6e6..192b0e23b7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -63,6 +63,7 @@ pyspark = "^3.2.1" [tool.poetry.extras] pyspark = ["pyspark"] spark = ["pyspark"] +athena = ["awswrangler"] postgres = ["sqlalchemy", "psycopg2-binary"] [build-system] From 0892b2a33c668986f2986cb0217c2c0634f7ef2b Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Tue, 12 Sep 2023 14:37:05 +0100 Subject: [PATCH 12/19] py3.7+ -> 3.8+ --- docs/getting_started.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/getting_started.md b/docs/getting_started.md index 79351b9eae..d198c71f3a 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -6,7 +6,7 @@ hide: # Getting Started ## :material-download: Install -Splink supports python 3.7+. +Splink supports python 3.8+. To obtain the latest released version of splink you can install from PyPI using pip: ```shell From 89a9c2fbab8ac8b02616231881e38ec775fec3f2 Mon Sep 17 00:00:00 2001 From: Tom Hepworth <45356472+ThomasHepworth@users.noreply.github.com> Date: Tue, 12 Sep 2023 14:37:34 +0100 Subject: [PATCH 13/19] py3.7+ -> 3.8+ --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 666cb7de82..b83307a73b 100644 --- a/README.md +++ b/README.md @@ -58,7 +58,7 @@ The Office for National Statistics have written a [case study about using Splink ## Installation -Splink supports python 3.7+. To obtain the latest released version of splink you can install from PyPI using pip: +Splink supports python 3.8+. To obtain the latest released version of splink you can install from PyPI using pip: ```sh pip install splink From 2075ae51e1962e3cdb1cc57b49df5d92012d7543 Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Wed, 13 Sep 2023 11:23:54 +0100 Subject: [PATCH 14/19] pyarrow = 7.0.0 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 192b0e23b7..6b11719351 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,7 +54,7 @@ lzstring = "1.0.4" [tool.poetry.group.demos.dependencies] importlib-resources = "5.4.0" jupyterlab = "3.6.1" -pyarrow = "^7.0.0" +pyarrow = "7.0.0" ipywidgets = "8.0.4" nbmake = "1.3.4" pytest = "^7.0" From 378d6a5e7fef9f130e5060b2806a24dac9beaa27 Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Wed, 13 Sep 2023 21:47:11 +0100 Subject: [PATCH 15/19] downgrade pandas --- poetry.lock | 560 +++++++++++++++++++++++-------------------------- pyproject.toml | 11 +- 2 files changed, 271 insertions(+), 300 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spark = ["pyspark"] @@ -3502,4 +3474,4 @@ spark = ["pyspark"] [metadata] lock-version = "2.0" python-versions = ">=3.8,<4.0.0" -content-hash = "93618063d3842023bde4597b5ef65529988b90e1e3a6283e541c116cd6274457" +content-hash = "6bfacf7bdd3a2efcfdf76765b59af4952c874adb6d6b687c480af111aa29ac4f" diff --git a/pyproject.toml b/pyproject.toml index 6b11719351..20de9aea73 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,12 +11,12 @@ readme = "README.md" [tool.poetry.dependencies] python = ">=3.8,<4.0.0" jsonschema = ">=3.2,<5.0" -pandas = ">=1.2.0" +pandas = "^1.2.0" duckdb = ">=0.8.0" pyspark = {version="^3.2.1", optional=true} awswrangler = {version=">=3.0.0,<4.0.0", optional=true} psycopg2-binary = {version=">=2.8.0", optional=true} -sqlalchemy = {version=">=1.4.0,<2.0.0", optional=true} +sqlalchemy = {version=">=2.0.0", optional=true} # normalize issue in sqlglot - temporarily exclude updates sqlglot = ">=7.0.0,<11.4.2" altair = "^5.0.1" @@ -27,8 +27,7 @@ phonetics = "^1.0.5" [tool.poetry.group.dev.dependencies] tabulate = "0.8.9" pyspark = "^3.2.1" -# sqlalchemy >= 2.0.0 not working well with older pandas -sqlalchemy = ">=1.4.0,<2.0.0" +sqlalchemy = ">=2.0.0" # temporarily use binary version, to avoid issues with pg_config path psycopg2-binary = ">=2.8.0" @@ -40,7 +39,7 @@ ruff = "0.0.257" [tool.poetry.group.testing] [tool.poetry.group.testing.dependencies] pytest = "^7.0" -pyarrow = "^7.0.0" +pyarrow = ">=7.0.0" networkx = "2.5.1" rapidfuzz = "^2.0.3" @@ -54,7 +53,7 @@ lzstring = "1.0.4" [tool.poetry.group.demos.dependencies] importlib-resources = "5.4.0" jupyterlab = "3.6.1" -pyarrow = "7.0.0" +pyarrow = ">=7.0.0" ipywidgets = "8.0.4" nbmake = "1.3.4" pytest = "^7.0" From 29b5c842261b9dc5e496fc1f52aab13aa392b1dc Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Thu, 14 Sep 2023 10:38:12 +0100 Subject: [PATCH 16/19] cast dates as strings to avoid pandas issues --- tests/test_datediff_level.py | 11 ++++++++--- 1 file changed, 8 insertions(+), 3 deletions(-) diff --git a/tests/test_datediff_level.py b/tests/test_datediff_level.py index 5f4d57cfdb..42addde8b2 100644 --- a/tests/test_datediff_level.py +++ b/tests/test_datediff_level.py @@ -55,6 +55,7 @@ def test_datediff_levels(test_helpers, dialect): }, ] ) + df = helper.convert_frame(df) exact_match_fn = cl.exact_match("first_name") @@ -68,21 +69,25 @@ def test_datediff_levels(test_helpers, dialect): date_col="dob", date_threshold=30, date_metric="day", + cast_strings_to_date=True, ), cll.datediff_level( date_col="dob", date_threshold=12, date_metric="month", + cast_strings_to_date=True, ), cll.datediff_level( date_col="dob", date_threshold=5, date_metric="year", + cast_strings_to_date=True, ), cll.datediff_level( date_col="dob", date_threshold=100, date_metric="year", + cast_strings_to_date=True, ), cll.else_level(), ], @@ -98,14 +103,14 @@ def test_datediff_levels(test_helpers, dialect): "comparisons": [ exact_match_fn, cl.datediff_at_thresholds( - "dob", [30, 12, 5, 100], ["day", "month", "year", "year"] + "dob", [30, 12, 5, 100], + ["day", "month", "year", "year"], + cast_strings_to_date=True ), ], } # We need to put our column in datetime format for this to work - df["dob"] = pd.to_datetime(df["dob"]) - linker = helper.Linker(df, settings_cl, **helper.extra_linker_args()) cl_df_e = linker.predict().as_pandas_dataframe() linker = helper.Linker(df, settings_cll, **helper.extra_linker_args()) From 4691eea3ec202c2d220c1a79ca1887ac402af283 Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Thu, 14 Sep 2023 10:38:29 +0100 Subject: [PATCH 17/19] `iteritems()` -> `items()` --- tests/helpers.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/helpers.py b/tests/helpers.py index a22fb8e37d..b65a249c88 100644 --- a/tests/helpers.py +++ b/tests/helpers.py @@ -221,7 +221,7 @@ def convert_frame(self, df): # workaround to handle array column conversion # manually mark any list columns so type is handled correctly dtypes = {} - for colname, 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+[[package]] +name = "tzdata" +version = "2023.3" +description = "Provider of IANA time zone data" +category = "main" +optional = false +python-versions = ">=2" +files = [ + {file = "tzdata-2023.3-py2.py3-none-any.whl", hash = "sha256:7e65763eef3120314099b6939b5546db7adce1e7d6f2e179e3df563c70511eda"}, + {file = "tzdata-2023.3.tar.gz", hash = "sha256:11ef1e08e54acb0d4f95bdb1be05da659673de4acbd21bf9c69e94cc5e907a3a"}, +] + [[package]] name = "uri-template" version = "1.3.0" @@ -3474,4 +3498,4 @@ spark = ["pyspark"] [metadata] lock-version = "2.0" python-versions = ">=3.8,<4.0.0" -content-hash = "6bfacf7bdd3a2efcfdf76765b59af4952c874adb6d6b687c480af111aa29ac4f" +content-hash = "af3ec660b0144c6874c055bbcca6503c01d86a4028815a00dcd1b2bbaf63afc4" diff --git a/pyproject.toml b/pyproject.toml index 20de9aea73..165fcfcbcf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,12 +11,13 @@ readme = "README.md" [tool.poetry.dependencies] python = ">=3.8,<4.0.0" jsonschema = ">=3.2,<5.0" -pandas = "^1.2.0" +pandas = ">=1.2.0" duckdb = ">=0.8.0" pyspark = {version="^3.2.1", optional=true} awswrangler = {version=">=3.0.0,<4.0.0", optional=true} psycopg2-binary = {version=">=2.8.0", optional=true} -sqlalchemy = {version=">=2.0.0", optional=true} +# sqlalchemy >= 2.0.0 not working well with older pandas +sqlalchemy = ">=1.4.0,<2.0.0" # normalize issue in sqlglot - temporarily exclude updates sqlglot = ">=7.0.0,<11.4.2" altair = "^5.0.1" @@ -27,7 +28,8 @@ phonetics = "^1.0.5" [tool.poetry.group.dev.dependencies] tabulate = "0.8.9" pyspark = "^3.2.1" -sqlalchemy = ">=2.0.0" +# sqlalchemy >= 2.0.0 not working well with older pandas +sqlalchemy = ">=1.4.0,<2.0.0" # temporarily use binary version, to avoid issues with pg_config path psycopg2-binary = ">=2.8.0" From 94b954c33a1b3b6003aafa262e43fca2e419cb54 Mon Sep 17 00:00:00 2001 From: Tom Hepworth Date: Thu, 14 Sep 2023 09:40:09 +0000 Subject: [PATCH 19/19] lint with black --- tests/test_datediff_level.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/tests/test_datediff_level.py b/tests/test_datediff_level.py index 42addde8b2..c30172cef8 100644 --- a/tests/test_datediff_level.py +++ b/tests/test_datediff_level.py @@ -103,9 +103,10 @@ def test_datediff_levels(test_helpers, dialect): "comparisons": [ exact_match_fn, cl.datediff_at_thresholds( - "dob", [30, 12, 5, 100], + "dob", + [30, 12, 5, 100], ["day", "month", "year", "year"], - cast_strings_to_date=True + cast_strings_to_date=True, ), ], }