compilation error with -openmp in dev/master/2014.05.23 #22
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Hi, I checked in a fix for file MOM_thickness_diffuse.F90 under branch Zhi On Wed, May 28, 2014 at 11:50 AM, Niki Zadeh notifications@github.comwrote:
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This is fixed. |
gustavo-marques
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Aug 15, 2017
Updates IOB fluxes and adds option to write restart files
nikizadehgfdl
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Oct 9, 2017
- NOAA-GFDL/MOM6@ae22a0f Merge pull request mom-ocean#578 from NCAR/dev/ncar - NOAA-GFDL/MOM6@f4f882f Merge pull request mom-ocean#23 from gustavo-marques/combine_mct_modules - NOAA-GFDL/MOM6@a85b728 Merge MCT modules - NOAA-GFDL/MOM6@ba5b5ba Merge pull request mom-ocean#22 from gustavo-marques/check_fluxes - NOAA-GFDL/MOM6@f5a8483 Adds option to write restart files - NOAA-GFDL/MOM6@8745b4b Fills additional IOB fluxes - NOAA-GFDL/MOM6@f6b22ff Merge branch 'dev/ncar' into check_fluxes - NOAA-GFDL/MOM6@369d5d6 Merge pull request mom-ocean#21 from alperaltuntas/dev/ncar - NOAA-GFDL/MOM6@2582e0a Adds run paramaters to control SW decomposition - NOAA-GFDL/MOM6@58f78b9 Fill IOB, some fluxes still need to be checked - NOAA-GFDL/MOM6@06a30ab Fixed clock and timing - NOAA-GFDL/MOM6@1bca79b Merge pull request mom-ocean#20 from gustavo-marques/fix_merge - NOAA-GFDL/MOM6@fb89b08 Adds code that got lost during merge - NOAA-GFDL/MOM6@7480492 Merge pull request mom-ocean#19 from gustavo-marques/new_merge - NOAA-GFDL/MOM6@be1e6cf Merge branch 'dev/master' into dev/ncar - NOAA-GFDL/MOM6@76565cb Merge pull request mom-ocean#17 from gustavo-marques/fix_ssh_slopes - NOAA-GFDL/MOM6@c04f081 Fix ssh slope calculation - NOAA-GFDL/MOM6@17d4586 Merge pull request mom-ocean#16 from adcroft/ncar-cherry-picked-fixes - NOAA-GFDL/MOM6@be46fee (*)Fixes gprime(1) when no layer coordinates are set - NOAA-GFDL/MOM6@fccb7ae Avoids a SEGV when OBC are not in use with bi-harmonic friction - NOAA-GFDL/MOM6@f42c970 Merge pull request mom-ocean#15 from gustavo-marques/small_fixes - NOAA-GFDL/MOM6@31787c2 Adds reference to set_time that was lost during a conflict handling - NOAA-GFDL/MOM6@d77936e Fix intent(inout) in ice_ocean_boundary - NOAA-GFDL/MOM6@b403edd Merge pull request mom-ocean#14 from gustavo-marques/docs - NOAA-GFDL/MOM6@4d346ca Merge branch 'dev/ncar' into docs - NOAA-GFDL/MOM6@f7c26a5 Clean the module and start doxygenizing it - NOAA-GFDL/MOM6@cd58e2a Merge pull request mom-ocean#13 from alperaltuntas/dev/ncar - NOAA-GFDL/MOM6@37a53bc reorganize file structure - NOAA-GFDL/MOM6@e6c5ddd Merge pull request mom-ocean#12 from gustavo-marques/fill_ice_ocean_bnd - NOAA-GFDL/MOM6@6b6289a Remove trailing whitespace - NOAA-GFDL/MOM6@7ce40e5 Fix undefined reference to fill_ice_ocean_bnd - NOAA-GFDL/MOM6@d517719 Merge branch 'dev/ncar' into fill_ice_ocean_bnd - NOAA-GFDL/MOM6@b69ab33 Filling ice_ocean_bnd - Draft - NOAA-GFDL/MOM6@a306c90 Merge pull request mom-ocean#11 from adcroft/use-ocn-public-for-surface - NOAA-GFDL/MOM6@c83e238 Correct indexing when using ocean_public_type - NOAA-GFDL/MOM6@1f39c84 Replaces use of "surface" with "ocean_public_type" - NOAA-GFDL/MOM6@5cd8d7a Filling ice_ocean_bnd, still needs work - NOAA-GFDL/MOM6@3ceef26 Merge pull request mom-ocean#10 from adcroft/sketch-out-mct-run - NOAA-GFDL/MOM6@714e8d6 Adds placeholders for stepping foward MOM - NOAA-GFDL/MOM6@7f2207c Merge pull request #7 from adcroft/fix-mct-whitespace - NOAA-GFDL/MOM6@a1db77f Cleans up white space - NOAA-GFDL/MOM6@5700d67 Merge pull request #6 from adcroft/add-use-only-for-imports - NOAA-GFDL/MOM6@beac3ed Adds "only" for all use statements - NOAA-GFDL/MOM6@231d19e Merge pull request #5 from alperaltuntas/dev/ncar - NOAA-GFDL/MOM6@3a923a2 Got initialization working - NOAA-GFDL/MOM6@8b38141 Wrapped global data - NOAA-GFDL/MOM6@970f848 added debugging - NOAA-GFDL/MOM6@2540ed8 Filled empty subroutines in ocn_comp_mct.F90 - NOAA-GFDL/MOM6@ed3ed30 Added ocn_import_export module - NOAA-GFDL/MOM6@aba7dc2 Completed ocn_init_mct - NOAA-GFDL/MOM6@5df3bc3 Added method to point ponters to members of ocean_state_type - NOAA-GFDL/MOM6@57e6086 Added methods to return domain/grid shape - NOAA-GFDL/MOM6@37e7356 Added ocn_import_export.F90 - NOAA-GFDL/MOM6@2b794da Merge pull request #4 from alperaltuntas/dev/ncar - NOAA-GFDL/MOM6@fbd405b Added coupler indices module - NOAA-GFDL/MOM6@fa86163 Merge pull request #3 from NCAR/dev/gfdl - NOAA-GFDL/MOM6@e8f2999 Merge pull request #2 from gustavo-marques/temp_salt_z_init_file - NOAA-GFDL/MOM6@86936ba Adds option to read initial temp and salt from separate files - NOAA-GFDL/MOM6@54f7976 Most initialization working - NOAA-GFDL/MOM6@426357c Time and calendar initialization in ocn_comp_mct.F90 - NOAA-GFDL/MOM6@346097d Moved blank ocn_comp_mct.F90 - NOAA-GFDL/MOM6@405fecb Merge pull request #1 from gustavo-marques/ice_shelf - NOAA-GFDL/MOM6@711a613 Removes frazil's contribution to evaporation
nikizadehgfdl
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- Updates MOM_parameter_doc files. - NOAA-GFDL/MOM6@cde6d3f Merge branch 'dev/master' into dev/gfdl - NOAA-GFDL/MOM6@ae22a0f Merge pull request mom-ocean#578 from NCAR/dev/ncar - NOAA-GFDL/MOM6@f4f882f Merge pull request mom-ocean#23 from gustavo-marques/combine_mct_modules - NOAA-GFDL/MOM6@a85b728 Merge MCT modules - NOAA-GFDL/MOM6@ba5b5ba Merge pull request mom-ocean#22 from gustavo-marques/check_fluxes - NOAA-GFDL/MOM6@f5a8483 Adds option to write restart files - NOAA-GFDL/MOM6@8745b4b Fills additional IOB fluxes - NOAA-GFDL/MOM6@f6b22ff Merge branch 'dev/ncar' into check_fluxes - NOAA-GFDL/MOM6@369d5d6 Merge pull request mom-ocean#21 from alperaltuntas/dev/ncar - NOAA-GFDL/MOM6@2582e0a Adds run paramaters to control SW decomposition - NOAA-GFDL/MOM6@58f78b9 Fill IOB, some fluxes still need to be checked - NOAA-GFDL/MOM6@06a30ab Fixed clock and timing - NOAA-GFDL/MOM6@1bca79b Merge pull request mom-ocean#20 from gustavo-marques/fix_merge - NOAA-GFDL/MOM6@fb89b08 Adds code that got lost during merge - NOAA-GFDL/MOM6@7480492 Merge pull request mom-ocean#19 from gustavo-marques/new_merge - NOAA-GFDL/MOM6@be1e6cf Merge branch 'dev/master' into dev/ncar - NOAA-GFDL/MOM6@76565cb Merge pull request mom-ocean#17 from gustavo-marques/fix_ssh_slopes - NOAA-GFDL/MOM6@c04f081 Fix ssh slope calculation - NOAA-GFDL/MOM6@17d4586 Merge pull request mom-ocean#16 from adcroft/ncar-cherry-picked-fixes - NOAA-GFDL/MOM6@be46fee (*)Fixes gprime(1) when no layer coordinates are set - NOAA-GFDL/MOM6@fccb7ae Avoids a SEGV when OBC are not in use with bi-harmonic friction - NOAA-GFDL/MOM6@f42c970 Merge pull request mom-ocean#15 from gustavo-marques/small_fixes - NOAA-GFDL/MOM6@31787c2 Adds reference to set_time that was lost during a conflict handling - NOAA-GFDL/MOM6@d77936e Fix intent(inout) in ice_ocean_boundary - NOAA-GFDL/MOM6@b403edd Merge pull request mom-ocean#14 from gustavo-marques/docs - NOAA-GFDL/MOM6@4d346ca Merge branch 'dev/ncar' into docs - NOAA-GFDL/MOM6@f7c26a5 Clean the module and start doxygenizing it - NOAA-GFDL/MOM6@cd58e2a Merge pull request mom-ocean#13 from alperaltuntas/dev/ncar - NOAA-GFDL/MOM6@37a53bc reorganize file structure - NOAA-GFDL/MOM6@e6c5ddd Merge pull request mom-ocean#12 from gustavo-marques/fill_ice_ocean_bnd - NOAA-GFDL/MOM6@6b6289a Remove trailing whitespace - NOAA-GFDL/MOM6@7ce40e5 Fix undefined reference to fill_ice_ocean_bnd - NOAA-GFDL/MOM6@d517719 Merge branch 'dev/ncar' into fill_ice_ocean_bnd - NOAA-GFDL/MOM6@b69ab33 Filling ice_ocean_bnd - Draft - NOAA-GFDL/MOM6@a306c90 Merge pull request mom-ocean#11 from adcroft/use-ocn-public-for-surface - NOAA-GFDL/MOM6@c83e238 Correct indexing when using ocean_public_type - NOAA-GFDL/MOM6@1f39c84 Replaces use of "surface" with "ocean_public_type" - NOAA-GFDL/MOM6@5cd8d7a Filling ice_ocean_bnd, still needs work - NOAA-GFDL/MOM6@3ceef26 Merge pull request mom-ocean#10 from adcroft/sketch-out-mct-run - NOAA-GFDL/MOM6@714e8d6 Adds placeholders for stepping foward MOM - NOAA-GFDL/MOM6@7f2207c Merge pull request #7 from adcroft/fix-mct-whitespace - NOAA-GFDL/MOM6@a1db77f Cleans up white space - NOAA-GFDL/MOM6@5700d67 Merge pull request #6 from adcroft/add-use-only-for-imports - NOAA-GFDL/MOM6@beac3ed Adds "only" for all use statements - NOAA-GFDL/MOM6@231d19e Merge pull request #5 from alperaltuntas/dev/ncar - NOAA-GFDL/MOM6@3a923a2 Got initialization working - NOAA-GFDL/MOM6@8b38141 Wrapped global data - NOAA-GFDL/MOM6@970f848 added debugging - NOAA-GFDL/MOM6@2540ed8 Filled empty subroutines in ocn_comp_mct.F90 - NOAA-GFDL/MOM6@ed3ed30 Added ocn_import_export module - NOAA-GFDL/MOM6@aba7dc2 Completed ocn_init_mct - NOAA-GFDL/MOM6@5df3bc3 Added method to point ponters to members of ocean_state_type - NOAA-GFDL/MOM6@57e6086 Added methods to return domain/grid shape - NOAA-GFDL/MOM6@37e7356 Added ocn_import_export.F90 - NOAA-GFDL/MOM6@2b794da Merge pull request #4 from alperaltuntas/dev/ncar - NOAA-GFDL/MOM6@fbd405b Added coupler indices module - NOAA-GFDL/MOM6@fa86163 Merge pull request #3 from NCAR/dev/gfdl - NOAA-GFDL/MOM6@e8f2999 Merge pull request #2 from gustavo-marques/temp_salt_z_init_file - NOAA-GFDL/MOM6@86936ba Adds option to read initial temp and salt from separate files - NOAA-GFDL/MOM6@54f7976 Most initialization working - NOAA-GFDL/MOM6@426357c Time and calendar initialization in ocn_comp_mct.F90 - NOAA-GFDL/MOM6@346097d Moved blank ocn_comp_mct.F90 - NOAA-GFDL/MOM6@405fecb Merge pull request #1 from gustavo-marques/ice_shelf - NOAA-GFDL/MOM6@711a613 Removes frazil's contribution to evaporation
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* allows control of MOM6 restarts and MOM6 intermediate restarts using nems.configure settings restart_n and restart_option. Fixes duplicate restart issue when running with CMEPS (mom-ocean#16). * when field dumping is turned on, all fields in import state and export state are written to single file with timestamped file name (mom-ocean#15) * moves call to data_override field lrunoff out of the enclosing do loop (mom-ocean#21 ) Co-authored-by: Mariana Vertenstein <mvertens@ucar.edu>
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Mar 2, 2021
nuopc_driver updates (mom-ocean#22)
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NoraLoose
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Mar 20, 2022
…mar2022 Merge dev/gfdl as of 02 Mar 2022
gustavo-marques
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May 6, 2022
Stanley param in MOM_isopycnal_slopes and thickness diffuse index fix
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May 17, 2022
* initial hooks for stochastic EOS modifications * remove debug statements * add documentation * Change ampltiude from 0.39 to sqrt(.39) * remove global_indexing logic from stoch_eos_init * switch to using MOM_random and add restart capability * update random sequence to update each each time-step * remove tseed0 from MOM_random (leftover from debugging) * Added necessary submodules and S^2, T^2 diagnostics to MOM_diagnostics * Added diagnostics for outputting variables related to the stochastic parameterization. * Diagnostics in MOM_PressureForce_FV updated for stochastic (rather than deterministic) Stanley SGS T variance parameterization. * Added parentheses for reproducibility. * Changed diagnostics to account for possible absence of stoch_eos_pattern in MOM_PressureForce_FV, when deterministic parameterization is on. * remove mom6_da_hooks and geoKdTree from pkg * add stochastic compoment to MOM_thickness_diffuse * fix array size declaration and post_data * Corrected indexing of loops in MOM_calc_varT * Changed how parameterization of SGS T variance (deterministic and stochastic) is switched on in PGF and thickness diffusion codes * Corrected a few typos * Cleaned up indices, redundant diagnostic, printing * Fixed diagnostic IDs * Fixed diagnostics typo * Corrected indices in calculation of tv%varT * Minor index fix * Corrected bug in pressure in Stanley diagnostics * Fixed whitespace error * Stoch eos clock (#5) *Added a clock for the Stanley parameterization Co-authored-by: jkenigson <jkenigso@gmail.com> * add halo update to random pattern * Update MOM_stoch_eos.F90 Fix bug for looping over compute domain (is -> isc etc.) * Avoid unnessary computations on halo (MOM_stoch_eos) and code clean-up (MOM_thickness_diffuse) * Removed halo updates before determ param calc * Update MOM_stoch_eos.F90 Removed unnecessary code * Bug - indices are transposed * Changed Stanley stochastic coefficient from exp(X) to exp(aX) (#9) * Changed Stanley stochastic coefficient from exp(X) to exp(aX) * Extra spaces removed * Stoch eos init fix (mom-ocean#10) * Don't bother calculating tv%varT if stanley_coeff<0 * Missing then added * Merge Ian Grooms Tvar Discretization (mom-ocean#11) * Update MOM_stoch_eos.F90 In progress updating stencil for$ | dx \times \nabla T|^2$ calculation * New discretization of |dx\circ\nablaT|^2 Co-authored-by: Ian Grooms <ian.grooms@colorado.edu> * Multiplied tvar%SGS by grid cell thickness ratio * Added limiter for tv%varT * Stoch eos ncar linear disc (mom-ocean#12) * Update MOM_stoch_eos.F90 In progress updating stencil for$ | dx \times \nabla T|^2$ calculation * New discretization of |dx\circ\nablaT|^2 * AR1 timescale land mask Adds land mask to the computation of the AR1 decorrelation time * Update dt in call to MOM_stoch_eos_run The call to `MOM_stoch_eos_run` (which time steps the noise) is from within `step_MOM_dynamics`. `step_MOM_dynamics` advances on time step `dt` (per line 957), but the noise is updated using `dt_thermo`. It seems more appropriate to update the noise using `dt`, since it gets called from within `step_MOM_dynamics`. * Fixed the units for r_sm_H * Remove vestigial declarations The variables `hl`, `Tl`, `mn_T`, `mn_T2`, and `r_sm_H` are no longer used, so I removed their declarations and an OMP private clause Co-authored-by: Ian Grooms <ian.grooms@colorado.edu> * Update MOM_thickness_diffuse.F90 Changed index for soft convention * Update CVMix-src * Ensure use_varT, etc., initialized * Don't register stanley diagnostics if scheme is off * Stanley density second derivs at h pts (mom-ocean#15) * Change discretization of Stanley correction (drho_dT_dT at h points) * Limit Stanley noise, shrink limiting value * Revert t variance discretization * Reverted variable declarations * Stanley scheme in mixed_layer_restrat, vert_fill in stoch_eos, code cleanup (mom-ocean#19) * Test Stanley EOS param in mixed_layer_restrat * Fix size of TS cov, S var in Stanley calculate_density calls * Test move stanley scheme initialization * Added missing openMP directives * Revert Stanley tvar discretization (mom-ocean#18) * Perform vertical filling in calculation of T variance * Variable declaration syntax error, remove scaling from get_param * Fix call to vert_fill_TS * Code cleanup, whitespace cleanup Co-authored-by: Jessica Kenigson <jessicak@cheyenne1.cheyenne.ucar.edu> * Use Stanley (2020) variance; scheme off at coast * Comment clean-up * Remove factor of 0.5 in Tvar * Don't calculate Stanley diagnostics on halo * Change start indices in stanley_density_1d * Stanley param in MOM_isopycnal_slopes (mom-ocean#22) Stanley param in MOM_isopycnal_slopes and thickness diffuse index fix * Set eady flag to true if use_stored_slopes is true * Cleanup, docs, whitespace * Docs and whitespace * Docs and whitespace * Docs and whitespace * Whitespace cleanup * Whitespace cleanup * Clean up whitespace * Docs cleanup * use_stanley * Update MOM_lateral_mixing_coeffs.F90 * Adds link to another TEOS10 module * Set Stanley off for testing * Line continuation Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: Philip Pegion <Philip.Pegion@noaa.gov> Co-authored-by: Jessica Kenigson <jessicak@cheyenne6.cheyenne.ucar.edu> Co-authored-by: Jessica Kenigson <jessicak@cheyenne3.cheyenne.ucar.edu> Co-authored-by: jkenigson <jkenigso@gmail.com> Co-authored-by: jskenigson <jessica.kenigson@colorado.edu> Co-authored-by: Jessica Kenigson <jessicak@cheyenne1.cheyenne.ucar.edu> Co-authored-by: Jessica Kenigson <jessicak@cheyenne5.cheyenne.ucar.edu> Co-authored-by: Philip Pegion <ppegion@Philips-MacBook-Pro.local> Co-authored-by: Jessica Kenigson <jessicak@cheyenne4.cheyenne.ucar.edu>
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ftn -D_USE_GENERIC_TRACER -DINTERNAL_FILE_NML -g -traceback -D_FILE_VERSION="
git-version-string /lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/src/mom6/src/parameterizations/lateral/MOM_thickness_diffuse.F90" -fpp -Wp,-w -I/opt/cray/netcdf/4.2.0/intel/120/include -fno-alias -auto -safe-cray-ptr -ftz -assume byterecl -i4 -r8 -nowarn -sox -I/opt/cray/netcdf/4.2.0/intel/120/include -O2 -debug minimal -fp-model precise -override-limits -openmp -I/lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/ncrc2.intel-repro-openmp/exec/ocean_shared -I/lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/ncrc2.intel-repro-openmp/exec/fms -c -I/lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/src/mom6/config_src/dynamic -I/lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/src/mom6/src/framework /lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/src/mom6/src/parameterizations/lateral/MOM_thickness_diffuse.F90/lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/src/mom6/src/parameterizations/lateral/MOM_thickness_diffuse.F90(628): error #6752: Since the OpenMP* DEFAULT(NONE) clause applies, the PRIVATE, SHARED, REDUCTION, FIRSTPRIVATE, or LASTPRIVATE attribute must be explicitly specified for every variable. [CS]
if (CS%id_slope_x > 0) CS%diagSlopeX(I,j,k) = Slope
--------------^
/lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/src/mom6/src/parameterizations/lateral/MOM_thickness_diffuse.F90(808): error #6752: Since the OpenMP* DEFAULT(NONE) clause applies, the PRIVATE, SHARED, REDUCTION, FIRSTPRIVATE, or LASTPRIVATE attribute must be explicitly specified for every variable. [CS]
if (CS%id_slope_y > 0) CS%diagSlopeY(I,j,k) = Slope
--------------^
compilation aborted for /lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/src/mom6/src/parameterizations/lateral/MOM_thickness_diffuse.F90 (code 1)
make[1]: *** [MOM_thickness_diffuse.o] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory `/lustre/f1/Niki.Zadeh/testing_20140527/FMS_compile_libs/ncrc2.intel-repro-openmp/exec/mom6'
make: *** [mom6/libmom6.a] Error 2
make: *** Waiting for unfinished jobs....
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