Fix rendering association frequencies; use proper field for sorting t… #90
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Upload coverage report for main branch | |
on: | |
push: | |
branches: | |
- main | |
jobs: | |
test-backend: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: ["3.9", "3.10", "3.11"] | |
os: [ubuntu-latest] | |
#os: [ ubuntu-latest, windows-latest ] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
#---------------------------------------------- | |
# install & configure poetry | |
#---------------------------------------------- | |
- name: Install Poetry | |
uses: snok/install-poetry@v1 | |
#---------------------------------------------- | |
# install your root project, if required | |
#---------------------------------------------- | |
- name: Install library | |
run: poetry -C backend install --no-interaction | |
#---------------------------------------------- | |
# run pytest | |
#---------------------------------------------- | |
- name: Run tests | |
run: poetry -C backend run pytest backend/tests | |
#---------------------------------------------- | |
# coverage report | |
#---------------------------------------------- | |
- name: Generate coverage results | |
run: | | |
poetry -C backend run coverage run -m pytest backend/tests | |
poetry -C backend run coverage xml | |
poetry -C backend run coverage report -m | |
shell: bash | |
#---------------------------------------------- | |
# upload coverage results | |
#---------------------------------------------- | |
- name: Upload coverage report | |
if: github.repository == 'monarch-initiative/monarch-app' | |
uses: codecov/codecov-action@v4 | |
with: | |
name: codecov-results-${{ matrix.python-version }} | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: coverage.xml | |
fail_ci_if_error: true | |