Add Genotype to Phenotype to Monarch-KG/app (sup)

[sagehrke]

Genotype ingests

• Alliance Genotype Ingest 698
• Confirm that all IMPC models are in Alliance Genotype files (accounting for release cycles) 771

Phenotype ingests

• Alliance phenotype association ingest 700
• ZFIN genotype to phenotype ingest 702

Allele ingests

• Ingest Alleles from Alliance Variant-Allele file (TODO: create issue)

Variant ingests

• MaveDB (TODO: create issue) #770
• Clingen 739
• Clinvar 738

Data modeling

• Add biolink predicates to support allele to genotype

API/UI Support

• Support genotype names in search and node page
• Show genotype to phenotype associations in associations section
• Show allele to gene associations (May need an ingest for this?)
• Show allele to genotype associations
• Show gene to genotype associations? (do we need to ingest or infer these?)

Data Export

• Produce tsv export files for genotype associations

Semsimian

• Support searching for disease models in Semsimian / Phenotype Explorer

Exomiser?

• Look at whether Exomiser can import genotypes from monarch-kg