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Simplify loading of converter in CurieService #486

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merged 1 commit into from
Dec 4, 2023
Merged

Simplify loading of converter in CurieService #486

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6 changes: 2 additions & 4 deletions backend/src/monarch_py/service/curie_service.py
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
### make a singleton class that uses prefixmap and curies to expand curies

from curies import Converter
from prefixmaps.io.parser import load_multi_context
from prefixmaps import load_converter


class CurieService:
Expand All @@ -17,9 +17,7 @@ def __new__(cls):
def initialize(self):
# this is a magic keyword that represents the "merged" context from Chris M's algorithm
# (https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/data/merged.csv)
context = load_multi_context(["merged"])
extended_prefix_map = context.as_extended_prefix_map()
self.converter = Converter.from_extended_prefix_map(extended_prefix_map)
self.converter = load_converter(["merged"])

def expand(self, curie: str) -> str:
return self.converter.expand(curie)
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