From 27c0705acfaeddc32e75029bba8d0bf9a1c891f0 Mon Sep 17 00:00:00 2001
From: Trevor Bekolay <tbekolay@gmail.com>
Date: Tue, 13 Dec 2022 16:10:27 -0600
Subject: [PATCH] Switch to Github Actions

---
 .ci/secret.tar.enc                  | Bin 10256 -> 0 bytes
 .codecov.yml                        |  19 -------
 .github/workflows/ci.yml            |  57 +++++++++++++++++++
 .gitignore                          |  40 ++++++-------
 .nengobones.yml                     |  66 ++++++++-------------
 .templates/docs.sh.template         |  33 -----------
 .templates/slurm-script.sh.template |  18 +++---
 .travis.yml                         |  85 ----------------------------
 nengo_fpga/version.py               |  28 ++++++---
 9 files changed, 130 insertions(+), 216 deletions(-)
 delete mode 100644 .ci/secret.tar.enc
 delete mode 100644 .codecov.yml
 create mode 100644 .github/workflows/ci.yml
 delete mode 100644 .templates/docs.sh.template
 delete mode 100644 .travis.yml

diff --git a/.ci/secret.tar.enc b/.ci/secret.tar.enc
deleted file mode 100644
index 0372d9decb03d149244a0074dbd30a5d6a92cc2c..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

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diff --git a/.codecov.yml b/.codecov.yml
deleted file mode 100644
index 0d7f5b15..00000000
--- a/.codecov.yml
+++ /dev/null
@@ -1,19 +0,0 @@
-# Automatically generated by nengo-bones, do not edit this file directly
-
-codecov:
-  ci:
-    - "!ci.appveyor.com"
-  notify:
-    require_ci_to_pass: no
-
-coverage:
-  status:
-    project:
-      default:
-        enabled: yes
-        target: auto
-    patch:
-      default:
-        enabled: yes
-        target: 100%
-    changes: no
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 00000000..56b5815a
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,57 @@
+name: CI testing
+on:
+  pull_request: {}
+  push:
+    branches:
+      - main
+      - release-candidate-*
+    tags:
+      - v*
+  workflow_dispatch:
+    inputs:
+      debug_enabled:
+        description: Run the build with SSH debugging enabled
+        type: boolean
+        required: false
+        default: false
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    timeout-minutes: 60
+    strategy:
+      matrix:
+        include:
+          - script: static
+          - script: test
+            coverage-name: test
+          - script: docs
+      fail-fast: false
+    env:
+      SSH_KEY: ${{ secrets.SSH_KEY }}
+      SSH_CONFIG: ${{ secrets.SSH_CONFIG }}
+      GH_TOKEN: ${{ secrets.GH_TOKEN }}
+    steps:
+      - uses: nengo/nengo-bones/actions/setup@main
+        with:
+          python-version: "3.8"
+      - name: Install ffmpeg for docs
+        if: ${{ matrix.script == 'docs' }}
+        uses: FedericoCarboni/setup-ffmpeg@v2
+      - uses: nengo/nengo-bones/actions/generate-and-check@main
+      - uses: nengo/nengo-bones/actions/run-script@main
+        with:
+          name: ${{ matrix.script }}
+      - uses: actions/upload-artifact@v3
+        if: ${{ always() && matrix.coverage-name }}
+        with:
+          name: coverage-${{ matrix.coverage-name }}
+          path: .coverage
+  coverage:
+    runs-on: ubuntu-latest
+    timeout-minutes: 10
+    needs:
+      - test
+    if: ${{ always() }}
+    steps:
+      - uses: nengo/nengo-bones/actions/coverage-report@main
diff --git a/.gitignore b/.gitignore
index 798d2dd5..4840bd43 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,28 +1,28 @@
-*.py[co]
-.DS_Store
-_build
-build
-dist
-*.egg-info
-*~
 *.bak
+*.class
+*.dist-info/
+*.egg-info
+*.eggs/
+*.py[co]
 *.swp
-log.txt
-.ipynb_checkpoints/
+*~
+.DS_Store
 .cache
+.coverage
+.idea
+.ipynb_checkpoints/
+.pytest_cache/
 .tox
 .vagrant
-wintest.sh
+.vscode
 Vagrantfile
-*.class
-*.eggs/
-.coverage
+_build
+bones-scripts
+build
+dist
+docs/.doctrees
 htmlcov
-*.dist-info/
-.vscode
-.idea
-.pytest_cache/
-mnist.pkl.gz
 id_*.txt
-docs/.doctrees
-.ci/*.sh
+log.txt
+mnist.pkl.gz
+wintest.sh
diff --git a/.nengobones.yml b/.nengobones.yml
index 237e67d7..f4e68683 100644
--- a/.nengobones.yml
+++ b/.nengobones.yml
@@ -5,6 +5,7 @@ repo_name: nengo/nengo-fpga
 description: FPGA backend for Nengo
 copyright_start: 2018
 license: abr-nonfree
+main_branch: main
 
 license_rst: {}
 
@@ -44,35 +45,14 @@ docs_conf_py:
     nengo-pynq: "https://www.nengo.ai/nengo-pynq/"
   html_redirects:
     getting_started.html: getting-started.html
-    examples/notebooks/00-communication_channel.html:
-      examples/notebooks/00-communication-channel.html
-    examples/notebooks/01-learn_communication_channel.html:
-      examples/notebooks/01-learn-communication-channel.html
-    examples/notebooks/02-set_neuron_params.html:
-      examples/notebooks/02-set-neuron-params.html
-    examples/notebooks/05-controlled_oscillator.html:
-      examples/notebooks/05-controlled-oscillator.html
-    examples/notebooks/06-chaotic_attractor.html:
-      examples/notebooks/06-chaotic-attractor.html
+    examples/notebooks/00-communication_channel.html: examples/notebooks/00-communication-channel.html
+    examples/notebooks/01-learn_communication_channel.html: examples/notebooks/01-learn-communication-channel.html
+    examples/notebooks/02-set_neuron_params.html: examples/notebooks/02-set-neuron-params.html
+    examples/notebooks/05-controlled_oscillator.html: examples/notebooks/05-controlled-oscillator.html
+    examples/notebooks/06-chaotic_attractor.html: examples/notebooks/06-chaotic-attractor.html
   nengo_logo: nengo-fpga-full-light.svg
   nengo_logo_color: "#541a8b"
 
-travis_yml:
-  python: 3.6
-  jobs:
-    - script: static
-    - script: test
-    - script: remote-docs
-  slack_notifications: "ajq+5SXA+dscgOAUZs0HcALHNhRpo9iiqDGRhpuVAesnwJWwHWRpRZleVLkOKX7\
-    FghRU+GVzMvH97DCSaNJXAsggipZ3uXgGwMFSpMV/ytA0PT3Reox42anLJdCAdjr80Cb1O/OzA03vEcVAVm\
-    E+d/pTUhsQwmsWmITjypUNsrJrUnGHSGFcAeio+taILHsS54jGpzaw5EdElUxYiHapIbgQ6l3Fyw/RSqCUH\
-    6RAFdQGy0fqZ36qhm/vv5y+S58n7zDsPWtP8+BG67EjkILHrkrNxOBB7EUUdNmTqLa7we08rNtvo58Fk4pD\
-    KTaCT8WL3rD107+GdH+o4iAeK/10m0Sb6yFqMTDTJYlRyJ1J6JNYqXfhbrbHrliWWVnOLB5LIloEzjcfpcp\
-    73AcQQjxr8zE42B726cXiN94vmL4RgzyEfO4oMw6T5VQb3fRgjc+nUVhGIe4hEjg6/XVYjtLRVx782kAJEN\
-    1ML6tdJ/KA197znGPRznhuKAb+HhhoHrXmPXzjdMILVGeDx5dw04rYUzJUtMwP7ltKUX6Vjr1KZQwr4khvu\
-    /x5pyHwqPBftoxd2318MVwzS7eepLkbBu+uiZtHNoMiK4sKug8wuDvyM3GXuF1oEuIU2Z62bkMMASSJ+JUN\
-    xJOBzXq/JGvN05Z6daT2XOuniaUx+DfnGDtDx9s="
-
 ci_scripts:
   - template: static
   - template: test
@@ -81,22 +61,26 @@ ci_scripts:
     pip_install:
       - numpy>=1.13.0
       - matplotlib
-  - template: slurm-script
-    slurm_command: "srun -pCI"
-    wrapped_commands:
-      - sphinx-build
-    slurm_script: docs
-    output_name: slurm-docs
-  - template: remote-script
-    remote_script: slurm-docs
-    remote_setup:
-      - conda install -y pandoc ffmpeg
-    output_name: remote-docs
-    host: abrghost
-    travis_var_key: 2895d60e3414
-
-codecov_yml: {}
+# this setup can be used to run CI scripts remotely over slurm:
+#  - template: slurm-script
+#    slurm_command: "srun -pCI"
+#    wrapped_commands:
+#      - sphinx-build
+#    slurm_script: docs
+#    output_name: slurm-docs
+#  - template: remote-script
+#    remote_script: slurm-docs
+#    remote_setup:
+#      - micromamba install -y pandoc ffmpeg
+#    output_name: remote-docs
+#    host: abrghost
 
 pre_commit_config_yaml: {}
 
 pyproject_toml: {}
+
+version_py:
+  major: 0
+  minor: 2
+  patch: 3
+  release: false
diff --git a/.templates/docs.sh.template b/.templates/docs.sh.template
deleted file mode 100644
index 6099c33c..00000000
--- a/.templates/docs.sh.template
+++ /dev/null
@@ -1,33 +0,0 @@
-{% extends "templates/docs.sh.template" %}
-
-{% block header %}
-#!/usr/bin/env bash
-
-# Automatically generated by nengo-bones, do not edit this file directly
-
-NAME=$0
-COMMAND=$1
-STATUS=0  # used to exit with non-zero status if any command fails
-
-exe() {
-    echo "\$ $*";
-    args=( "$@" )
-    # remove empty spaces from args
-    for i in "${!args[@]}"; do
-      [ -n "${args[$i]}" ] || unset "args[$i]"
-    done
-    # put quotes around all arguments except the first. Also replace all ">" with "\>"
-    # since eval will treat ">" as a pipe out to file.
-    for i in "${!args[@]}"; do
-      if [[ $i -gt 0 ]]; then
-        args[$i]='"'${args[$i]//>/\>}'"'
-      fi
-    done
-    eval "${args[@]}" || { echo -e "\033[1;31mCOMMAND '${args[0]}' FAILED\033[0m"; STATUS=1; }
-}
-
-if [[ ! -e {{ pkg_name }} ]]; then
-    echo "Run this script from the root directory of this repository"
-    exit 1
-fi
-{% endblock %}
diff --git a/.templates/slurm-script.sh.template b/.templates/slurm-script.sh.template
index f56b2dfe..74593486 100644
--- a/.templates/slurm-script.sh.template
+++ b/.templates/slurm-script.sh.template
@@ -29,11 +29,11 @@ instead of the typical non-SLURM invocation.
 #}
 
 {% block install %}
-    bash .ci/{{ slurm_script }}.sh install || STATUS=1
+    bash bones-scripts/{{ slurm_script }}.sh install || STATUS=1
 {% endblock %}
 
 {% block before_script %}
-    bash .ci/{{ slurm_script }}.sh before_script || STATUS=1
+    bash bones-scripts/{{ slurm_script }}.sh before_script || STATUS=1
 {% endblock %}
 
 {% block script %}
@@ -48,29 +48,29 @@ instead of the typical non-SLURM invocation.
 
     {% endfor %}
     # Run script. Use existing shell instead of subshell to ensure alias applies.
-    . .ci/{{ slurm_script }}.sh script || STATUS=1
+    . bones-scripts/{{ slurm_script }}.sh script || STATUS=1
 {% endblock %}
 
 {% block before_cache %}
-    bash .ci/{{ slurm_script }}.sh before_cache || STATUS=1
+    bash bones-scripts/{{ slurm_script }}.sh before_cache || STATUS=1
 {% endblock %}
 
 {% block after_success %}
-    bash .ci/{{ slurm_script }}.sh after_success || STATUS=1
+    bash bones-scripts/{{ slurm_script }}.sh after_success || STATUS=1
 {% endblock %}
 
 {% block after_failure %}
-    bash .ci/{{ slurm_script }}.sh after_failure || STATUS=1
+    bash bones-scripts/{{ slurm_script }}.sh after_failure || STATUS=1
 {% endblock %}
 
 {% block before_deploy %}
-    bash .ci/{{ slurm_script }}.sh before_deploy || STATUS=1
+    bash bones-scripts/{{ slurm_script }}.sh before_deploy || STATUS=1
 {% endblock %}
 
 {% block after_deploy %}
-    bash .ci/{{ slurm_script }}.sh after_deploy || STATUS=1
+    bash bones-scripts/{{ slurm_script }}.sh after_deploy || STATUS=1
 {% endblock %}
 
 {% block after_script %}
-    bash .ci/{{ slurm_script }}.sh after_script || STATUS=1
+    bash bones-scripts/{{ slurm_script }}.sh after_script || STATUS=1
 {% endblock %}
diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 019a8040..00000000
--- a/.travis.yml
+++ /dev/null
@@ -1,85 +0,0 @@
-# Automatically generated by nengo-bones, do not edit this file directly
-
-language: python
-python: 3.6
-notifications:
-  email:
-    on_success: change
-    on_failure: change
-  slack:
-    if: branch = master
-    on_pull_requests: false
-    on_success: change
-    on_failure: always
-    rooms:
-      - secure: "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"
-cache: pip
-
-dist: xenial
-
-env:
-  global:
-    - SCRIPT="test"
-    - TEST_ARGS=""
-    - BRANCH_NAME="${TRAVIS_PULL_REQUEST_BRANCH:-$TRAVIS_BRANCH}"
-
-jobs:
-  include:
-  -
-    env:
-      SCRIPT="static"
-  -
-    env:
-      SCRIPT="test"
-  -
-    env:
-      SCRIPT="remote-docs"
-
-before_install:
-  # export travis_terminate for use in scripts, from here:
-  # https://github.com/travis-ci/travis-build/blob/master/lib/travis/build/bash/travis_terminate.bash
-  - export -f travis_terminate
-    _travis_terminate_agent
-    _travis_terminate_freebsd
-    _travis_terminate_linux
-    _travis_terminate_osx
-    _travis_terminate_unix
-    _travis_terminate_windows
-  # upgrade pip
-  - pip install pip setuptools --upgrade
-  # fixes setuptools bug, see https://github.com/pypa/setuptools/issues/3293
-  - pip install "importlib-metadata>=0.21"
-  # install/run nengo-bones
-  - pip install git+https://github.com/nengo/nengo-bones#egg=nengo-bones
-  - bones-generate --output-dir .ci ci-scripts
-  - bones-check --verbose
-  # display environment info
-  - pip freeze
-
-install:
-  - .ci/$SCRIPT.sh install
-  - pip freeze
-
-before_script:
-  - .ci/$SCRIPT.sh before_script
-
-script:
-  - .ci/$SCRIPT.sh script
-
-before_cache:
-  - .ci/$SCRIPT.sh before_cache
-
-after_success:
-  - .ci/$SCRIPT.sh after_success
-
-after_failure:
-  - .ci/$SCRIPT.sh after_failure
-
-before_deploy:
-  - .ci/$SCRIPT.sh before_deploy
-
-after_deploy:
-  - .ci/$SCRIPT.sh after_deploy
-
-after_script:
-  - .ci/$SCRIPT.sh after_script
diff --git a/nengo_fpga/version.py b/nengo_fpga/version.py
index cde6acd6..9eb244b9 100644
--- a/nengo_fpga/version.py
+++ b/nengo_fpga/version.py
@@ -1,15 +1,25 @@
-"""Nengo version information.
+# Automatically generated by nengo-bones, do not edit this file directly
 
-We use semantic versioning (see http://semver.org/).
-and conform to PEP440 (see https://www.python.org/dev/peps/pep-0440/).
-'.devN' will be added to the version unless the code base represents
-a release version. Release versions are git tagged with the version.
+# pylint: disable=consider-using-f-string,bad-string-format-type
+
+"""
+NengoFPGA version information.
+
+We use semantic versioning (see http://semver.org/) and conform to PEP440 (see
+https://www.python.org/dev/peps/pep-0440/). '.dev0' will be added to the version
+unless the code base represents a release version. Release versions are git
+tagged with the version.
 """
 
+version_info = (0, 2, 3)
+
 name = "nengo-fpga"
-version_info = (0, 2, 3)  # (major, minor, patch)
 dev = 0
 
-version = f"{'.'.join(str(v) for v in version_info)}" + (
-    f".dev{dev}" if dev is not None else ""
-)
+# use old string formatting, so that this can still run in Python <= 3.5
+# (since this file is parsed in setup.py, before python_requires is applied)
+version = ".".join(str(v) for v in version_info)
+if dev is not None:
+    version += ".dev%d" % dev
+
+copyright = "Copyright (c) 2018-2023 Applied Brain Research"