diff --git a/_pkgdown.yml b/_pkgdown.yml index efc4ce33..391a10b7 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -116,6 +116,37 @@ reference: contents: - runEgret +- title: BLOBFISH + desc: BLOBFISH functions + contents: + - RunBLOBFISH + - GenerateNullPANDADistribution + - BuildSubnetwork + - CalculatePValues + - FindSignificantEdgesForHop + - SignificantBreadthFirstSearch + - FindConnectionsForAllHopCounts + - PlotNetwork + +- title: YARN + desc: YARN functions + contents: + - checkMisAnnotation + - checkTissuesToMerge + - filterGenes + - filterLowGenes + - normalizeTissueAware + - annotateFromBiomart + - downloadGTEx + - extractMatrix + - filterMissingGenes + - filterSamples + - plotCMDS + - plotDensity + - plotHeatmap + - qsmooth + - qstats + - title: Plotting functions desc: function to plot the networks and community structures. contents: @@ -138,3 +169,5 @@ reference: - mut.ucec - exon.size - genes + - Bladder_data + - Skin_data diff --git a/docs/404.html b/docs/404.html index 2357cfd3..caf3eac4 100644 --- a/docs/404.html +++ b/docs/404.html @@ -7,8 +7,8 @@