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Add further validation of bagel.csv columns + column values against schema #33

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alyssadai opened this issue Apr 19, 2023 · 2 comments
Open
4 tasks

Add further validation of bagel.csv columns + column values against schema #33

alyssadai opened this issue Apr 19, 2023 · 2 comments
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_flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

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@alyssadai
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alyssadai commented Apr 19, 2023 •
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  • Confirm uploaded CSV contains at least one row?
  • Ignore columns that aren't specified in the schema when parsing bagel.csv
  • Error out if missing values for pipeline_name + pipeline_version
    Implement check for missing participant_id and session values #20
  • Check that only values listed in the "Range" field of a column exist in that column
@alyssadai alyssadai changed the title Process columns from an input bagel which are described in the bagel schema Validate column values in bagel.csv Jun 8, 2023
@alyssadai alyssadai changed the title Validate column values in bagel.csv Add further validation of bagel.csv columns + column values against schema Jun 8, 2023
@alyssadai alyssadai moved this to Backlog in Neurobagel Jun 14, 2023
@alyssadai alyssadai moved this from Backlog to Specify - Done in Neurobagel Jul 13, 2023
@alyssadai alyssadai moved this from Specify - Done to Specify - Active in Neurobagel Jul 13, 2023
@alyssadai alyssadai moved this from Specify - Active to Backlog in Neurobagel Jul 13, 2023
@alyssadai alyssadai moved this from Backlog to Specify - Active in Neurobagel Jul 13, 2023
@alyssadai alyssadai moved this from Specify - Active to Backlog in Neurobagel Jul 13, 2023
@alyssadai alyssadai removed the status in Neurobagel Aug 3, 2023
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We want to keep our issues up to date and active. This issue hasn't seen any activity in the last 30 days.
We have applied the stale-issue label to indicate that this issue should be reviewed again and then either prioritized or closed.

@github-actions github-actions bot added the _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again label Aug 18, 2023
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We want to keep our issues up to date and active. This issue hasn't seen any activity in the last 30 days.
We have applied the stale-issue label to indicate that this issue should be reviewed again and then either prioritized or closed.

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_flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again
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