diff --git a/add_hemisphere_to_tsv.py b/add_hemisphere_to_tsv.py new file mode 100644 index 0000000..73af88a --- /dev/null +++ b/add_hemisphere_to_tsv.py @@ -0,0 +1,31 @@ +from pathlib import Path +from rich import print +import pandas as pd +import json + +RENAME = True + +root_dir = Path(__file__).parent + +output_dir = root_dir / "atlases" / "label" / "Human" + +tsv_files = output_dir.glob("*.tsv") + +for file in tsv_files: + df = pd.read_csv(file, sep="\t") + hemispheres = [] + for row in df.iterrows(): + label = row[1]["label"] + if label.startswith("L_") or label.startswith("Left_"): + hemispheres.append("left") + elif label.startswith("R_") or label.startswith("Right_"): + hemispheres.append("right") + else: + hemispheres.append("bilateral") + + df["hemisphere"] = hemispheres + + print(df) + + if RENAME: + df.to_csv(file, sep="\t", index=False) diff --git a/atlases/label/Human/Anatomical-labels-csv/AAL.csv b/atlases/label/Human/Anatomical-labels-csv/AAL.csv deleted file mode 100644 index 40f7a85..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/AAL.csv +++ /dev/null @@ -1,121 +0,0 @@ -0,null,,,,, -1,L_Precentral_gyrus,,,,, -2,R_Precentral_gyrus,,,,, -3,L_Superior_frontal_gyrus_dorsolateral,,,,, -4,R_Superior_frontal_gyrus_dorsolateral,,,,, -5,L_Middle_frontal_gyrus,,,,, -6,R_Middle_frontal_gyrus,,,,, -7,L_Inferior_frontal_gyrus_triangular_part,,,,, -8,R_Inferior_frontal_gyrus_triangular_part,,,,, -9,L_Inferior_frontal_gyrus_opercular_part,,,,, -10,R_Inferior_frontal_gyrus_opercular_part,,,,, -11,L_Inferior_frontal_gyrus_orbital_part,,,,, -12,R_Inferior_frontal_gyrus_orbital_part,,,,, -13,L_Rolandic_operculum,,,,, -14,R_Rolandic_operculum,,,,, -15,L_Supplementary_motor_area_(Frontal_lobe_Medial_Surface),,,,, -16,R_Supplementary_motor_area_(Frontal_lobe_Medial_Surface),,,,, -17,L_Olfactory_cortex,,,,, -18,R_Olfactory_cortex,,,,, -19,L_Superior_frontal_gyrus_medial,,,,, -20,R_Superior_frontal_gyrus_medial,,,,, -21,L_Superior_frontal_gyrus_medial_orbital,,,,, -22,R_Superior_frontal_gyrus_medial_orbital,,,,, -23,L_Gyrus_rectus,,,,, -24,R_Gyrus_rectus,,,,, -25,L_Superior_frontal_gyrus_orbital_part,,,,, -26,R_Superior_frontal_gyrus_orbital_part,,,,, -27,L_Middle_frontal_gyrus_orbital_part,,,,, -28,R_Middle_frontal_gyrus_orbital_part,,,,, -29,L_Orbitofrontal_cortex_posterior,,,,, -30,R_Orbitofrontal_cortex_posterior,,,,, -31,L_Orbitofrontal_cortex_lateral,,,,, -32,R_Orbitofrontal_cortex_lateral,,,,, -33,L_Insula,,,,, -34,R_Insula,,,,, -35,L_Anterior_cingulate_and_paracingulate_gyri,,,,, -36,R_Anterior_cingulate_and_paracingulate_gyri,,,,, -37,L_Median_cingulate_and_paracingulate_gyri,,,,, -38,R_Median_cingulate_and_paracingulate_gyri,,,,, -39,L_Posterior_cingulate_gyrus,,,,, -40,R_Posterior_cingulate_gyrus,,,,, -41,L_Hippocampus,,,,, -42,R_Hippocampus,,,,, -43,L_Parahippocampal_gyrus,,,,, -44,R_Parahippocampal_gyrus,,,,, -45,L_Amygdala,,,,, -46,R_Amygdala,,,,, -47,L_Calcarine_fissure_and_surrounding_cortex,,,,, -48,R_Calcarine_fissure_and_surrounding_cortex,,,,, -49,L_Cuneus,,,,, -50,R_Cuneus,,,,, -51,L_Lingual_gyrus,,,,, -52,R_Lingual_gyrus,,,,, -53,L_Superior_occipital_gyrus,,,,, -54,R_Superior_occipital_gyrus,,,,, -55,L_Middle_occipital_gyrus,,,,, -56,R_Middle_occipital_gyrus,,,,, -57,L_Inferior_occipital_gyrus,,,,, -58,R_Inferior_occipital_gyrus,,,,, -59,L_Fusiform_gyrus,,,,, -60,R_Fusiform_gyrus,,,,, -61,L_Postcentral_gyrus,,,,, -62,R_Postcentral_gyrus,,,,, -63,L_Superior_parietal_gyrus,,,,, -64,R_Superior_parietal_gyrus,,,,, -65,L_Inferior_parietial_but_supramarginal_and_angular_gyri,,,,, -66,R_Inferior_parietial_but_supramarginal_and_angular_gyri,,,,, -67,L_Supramarginal_gyrus,,,,, -68,R_Suparmarginal_gyrus,,,,, -69,L_Angular_gyrus,,,,, -70,R_Angular_gyrus,,,,, -71,L_Precuneus,,,,, -72,R_Precuneus,,,,, -73,L_Paracentral_lobule,,,,, -74,R_Paracentral_lobule,,,,, -75,L_Caudate_nucleus,,,,, -76,R_Caudate_nucleus,,,,, -77,L_Lenticular_nucleus_putamen,,,,, -78,R_Lenticular_nucleus_putamen,,,,, -79,L_Lenticular_nucleus_pallidum,,,,, -80,R_Lenticular_nucleus_pallidum,,,,, -81,L_Thalamus,,,,, -82,R_Thalamus,,,,, -83,L_Heschl_gyrus,,,,, -84,R_Heschl_gyrus,,,,, -85,L_Superior_temporal_gyrus,,,,, -86,R_Superior_temporal_gyrus,,,,, -87,L_Temporal_pole_superior_temporal_gyrus,,,,, -88,R_Temporal_pole_superior_temporal_gyrus,,,,, -89,L_Middle_temporal_gyrus,,,,, -90,R_Middle_temporal_gyrus,,,,, -91,L_Temporal_pole_middle_temporal_gyrus,,,,, -92,R_Temporal_pole_middle_temporal_gyrus,,,,, -93,L_Inferior_temporal_gyrus,,,,, -94,R_Inferior_temporal_gyrus,,,,, -95,L_Cerebelum_Crus1,,,,, -96,R_Cerebelum_Crus1,,,,, -97,L_Cerebelum_Crus2,,,,, -98,R_Cerebelum_Crus2,,,,, -99,L_Cerebelum_3,,,,, -100,R_Cerebelum_3,,,,, -101,L_Cerebelum_4_5,,,,, -102,R_Cerebelum_4_5,,,,, -103,L_Cerebelum_6,,,,, -104,R_Cerebelum_6,,,,, -105,L_Cerebelum_7b,,,,, -106,R_Cerebelum_7b,,,,, -107,L_Cerebelum_8,,,,, -108,R_Cerebelum_8,,,,, -109,L_Cerebelum_9,,,,, -110,R_Cerebelum_9,,,,, -111,L_Cerebelum_10,,,,, -112,R_Cerebelum_10,,,,, -113,Vermis_1_2,,,,, -114,Vermis_4,,,,, -115,Vermis_4_5,,,,, -116,Vermis_6,,,,, -117,Vermis_7,,,,, -118,Vermis_8,,,,, -119,Vermis_9,,,,, -120,Vermis_10,,,,, \ No newline at end of file diff --git a/atlases/label/Human/Anatomical-labels-csv/AICHA.csv b/atlases/label/Human/Anatomical-labels-csv/AICHA.csv deleted file mode 100644 index e484f7a..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/AICHA.csv +++ /dev/null @@ -1,384 +0,0 @@ -1,L_Superior_Frontal_Gyrus_1 -2,R_Superior_Frontal_Gyrus_1 -3,L_Superior_Frontal_Gyrus_2 -4,R_Superior_Frontal_Gyrus_2 -5,L_Superior_Frontal_Gyrus_3 -6,R_Superior_Frontal_Gyrus_3 -7,L_Superior_Frontal_Sulcus_1 -8,R_Superior_Frontal_Sulcus_1 -9,L_Superior_Frontal_Sulcus_2 -10,R_Superior_Frontal_Sulcus_2 -11,L_Superior_Frontal_Sulcus_3 -12,R_Superior_Frontal_Sulcus_3 -13,L_Superior_Frontal_Sulcus_4 -14,R_Superior_Frontal_Sulcus_4 -15,L_Superior_Frontal_Sulcus_5 -16,R_Superior_Frontal_Sulcus_5 -17,L_Superior_Frontal_Sulcus_6 -18,R_Superior_Frontal_Sulcus_6 -19,L_Middle_Frontal_Gyrus_1 -20,R_Middle_Frontal_Gyrus_1 -21,L_Middle_Frontal_Gyrus_2 -22,R_Middle_Frontal_Gyrus_2 -23,L_Middle_Frontal_Gyrus_3 -24,R_Middle_Frontal_Gyrus_3 -25,L_Middle_Frontal_Gyrus_4 -26,R_Middle_Frontal_Gyrus_4 -27,L_Middle_Frontal_Gyrus_5 -28,R_Middle_Frontal_Gyrus_5 -29,L_Inferior_Frontal_Sulcus_1 -30,R_Inferior_Frontal_Sulcus_1 -31,L_Inferior_Frontal_Sulcus_2 -32,R_Inferior_Frontal_Sulcus_2 -33,L_Inferior_Frontal_Triangular_Gyrus -34,R_Inferior_Frontal_Triangular_Gyrus -35,L_Superior_Frontal_Orbital_Gyrus -36,R_Superior_Frontal_Orbital_Gyrus -37,L_Middle_Frontal_Orbital_Gyrus_1 -38,R_Middle_Frontal_Orbital_Gyrus_1 -39,L_Middle_Frontal_Orbital_Gyrus_2 -40,R_Middle_Frontal_Orbital_Gyrus_2 -41,L_Inferior_Frontal_Orbital_Gyrus_1 -42,R_Inferior_Frontal_Orbital_Gyrus_1 -43,L_Inferior_Frontal_Orbital_Gyrus_2 -44,R_Inferior_Frontal_Orbital_Gyrus_2 -45,L_Orbital_Sulcus_1 -46,R_Orbital_Sulcus_1 -47,L_Orbital_Sulcus_2 -48,R_Orbital_Sulcus_2 -49,L_Olfactory_Sulcus_1 -50,R_Olfactory_Sulcus_1 -51,L_Precentral_Sulcus_1 -52,R_Precentral_Sulcus_1 -53,L_Precentral_Sulcus_2 -54,R_Precentral_Sulcus_2 -55,L_Precentral_Sulcus_3 -56,R_Precentral_Sulcus_3 -57,L_Precentral_Sulcus_4 -58,R_Precentral_Sulcus_4 -59,L_Precentral_Sulcus_5 -60,R_Precentral_Sulcus_5 -61,L_Precentral_Sulcus_6 -62,R_Precentral_Sulcus_6 -63,L_Rolando_Sulcus_1 -64,R_Rolando_Sulcus_1 -65,L_Rolando_Sulcus_2 -66,R_Rolando_Sulcus_2 -67,L_Rolando_Sulcus_3 -68,R_Rolando_Sulcus_3 -69,L_Rolando_Sulcus_4 -70,R_Rolando_Sulcus_4 -71,L_Postcentral_Sulcus_1 -72,R_Postcentral_Sulcus_1 -73,L_Postcentral_Sulcus_2 -74,R_Postcentral_Sulcus_2 -75,L_Postcentral_Sulcus_3 -76,R_Postcentral_Sulcus_3 -77,L_Superior_Parietal_Gyrus_1 -78,R_Superior_Parietal_Gyrus_1 -79,L_Superior_Parietal_Gyrus_2 -80,R_Superior_Parietal_Gyrus_2 -81,L_Superior_Parietal_Gyrus_3 -82,R_Superior_Parietal_Gyrus_3 -83,L_Superior_Parietal_Gyrus_4 -84,R_Superior_Parietal_Gyrus_4 -85,L_Superior_Parietal_Gyrus_5 -86,R_Superior_Parietal_Gyrus_5 -87,L_SupraMarginal_Gyrus_1 -88,R_SupraMarginal_Gyrus_1 -89,L_SupraMarginal_Gyrus_2 -90,R_SupraMarginal_Gyrus_2 -91,L_SupraMarginal_Gyrus_3 -92,R_SupraMarginal_Gyrus_3 -93,L_SupraMarginal_Gyrus_4 -94,R_SupraMarginal_Gyrus_4 -95,L_SupraMarginal_Gyrus_5 -96,R_SupraMarginal_Gyrus_5 -97,L_SupraMarginal_Gyrus_6 -98,R_SupraMarginal_Gyrus_6 -99,L_SupraMarginal_Gyrus_7 -100,R_SupraMarginal_Gyrus_7 -101,L_Angular_Gyrus_1 -102,R_Angular_Gyrus_1 -103,L_Angular_Gyrus_2 -104,R_Angular_Gyrus_2 -105,L_Angular_Gyrus_3 -106,R_Angular_Gyrus_3 -107,L_Inferior_Parietal_Gyrus_1 -108,R_Inferior_Parietal_Gyrus_1 -109,L_Intraparietal_Sulcus_1 -110,R_Intraparietal_Sulcus_1 -111,L_Intraparietal_Sulcus_2 -112,R_Intraparietal_Sulcus_2 -113,L_Intraparietal_Sulcus_3 -114,R_Intraparietal_Sulcus_3 -115,L_Intraoccipital_Sulcus_1 -116,R_Intraoccipital_Sulcus_1 -117,L_Occipital_Pole_Gyrus_1 -118,R_Occipital_Pole_Gyrus_1 -119,L_Lateral_Occipital_Gyrus_1 -120,R_Lateral_Occipital_Gyrus_1 -121,L_Lateral_Occipital_Gyrus_2 -122,R_Lateral_Occipital_Gyrus_2 -123,L_Lateral_Occipital_Gyrus_3 -124,R_Lateral_Occipital_Gyrus_3 -125,L_Lateral_Occipital_Gyrus_4 -126,R_Lateral_Occipital_Gyrus_4 -127,L_Lateral_Occipital_Gyrus_5 -128,R_Lateral_Occipital_Gyrus_5 -129,L_Superior_Occipital_Gyrus_1 -130,R_Superior_Occipital_Gyrus_1 -131,L_Superior_Occipital_Gyrus_2 -132,R_Superior_Occipital_Gyrus_2 -133,L_Middle_Occipital_Gyrus_1 -134,R_Middle_Occipital_Gyrus_1 -135,L_Middle_Occipital_Gyrus_2 -136,R_Middle_Occipital_Gyrus_2 -137,L_Middle_Occipital_Gyrus_3 -138,R_Middle_Occipital_Gyrus_3 -139,L_Middle_Occipital_Gyrus_4 -140,R_Middle_Occipital_Gyrus_4 -141,L_Inferior_Occipital_Gyrus_1 -142,R_Inferior_Occipital_Gyrus_1 -143,L_Inferior_Occipital_Gyrus_2 -144,R_Inferior_Occipital_Gyrus_2 -145,L_Anterior_Insula_Gyrus_1 -146,R_Anterior_Insula_Gyrus_1 -147,L_Anterior_Insula_Gyrus_2 -148,R_Anterior_Insula_Gyrus_2 -149,L_Anterior_Insula_Gyrus_3 -150,R_Anterior_Insula_Gyrus_3 -151,L_Anterior_Insula_Gyrus_4 -152,R_Anterior_Insula_Gyrus_4 -153,L_Anterior_Insula_Gyrus_5 -154,R_Anterior_Insula_Gyrus_5 -155,L_Insula-posterior_Gyrus_1 -156,R_Insula-posterior_Gyrus_1 -157,L_Rolandic_Operculum_Gyrus_1 -158,R_Rolandic_Operculum_Gyrus_1 -159,L_Rolandic_Operculum_Gyrus_2 -160,R_Rolandic_Operculum_Gyrus_2 -161,L_Superior_Temporal_Gyrus_1 -162,R_Superior_Temporal_Gyrus_1 -163,L_Superior_Temporal_Gyrus_2 -164,R_Superior_Temporal_Gyrus_2 -165,L_Superior_Temporal_Gyrus_3 -166,R_Superior_Temporal_Gyrus_3 -167,L_Superior_Temporal_Gyrus_4 -168,R_Superior_Temporal_Gyrus_4 -169,L_Supeiror_Temporal_Sulcus_1 -170,R_Superior_Temporal_Sulcus_1 -171,L_Supeiror_Temporal_Sulcus_2 -172,R_Superior_Temporal_Sulcus_2 -173,L_Supeiror_Temporal_Sulcus_3 -174,R_Superior_Temporal_Sulcus_3 -175,L_Supeiror_Temporal_Sulcus_4 -176,R_Superior_Temporal_Sulcus_4 -177,L_Supeiror_Temporal_Sulcus_5 -178,R_Superior_Temporal_Sulcus_5 -179,L_Middle_Temporal_Gyrus_1 -180,R_Middle_Temporal_Gyrus_1 -181,L_Middle_Temporal_Gyrus_2 -182,R_Middle_Temporal_Gyrus_2 -183,L_Middle_Temporal_Gyrus_3 -184,R_Middle_Temporal_Gyrus_3 -185,L_Middle_Temporal_Gyrus_4 -186,R_Middle_Temporal_Gyrus_4 -187,L_Inferior_Temporal_Gyrus_1 -188,R_Inferior_Temporal_Gyrus_1 -189,L_Inferior_Temporal_Gyrus_2 -190,R_Inferior_Temporal_Gyrus_2 -191,L_Inferior_Temporal_Gyrus_3 -192,R_Inferior_Temporal_Gyrus_3 -193,L_Inferior_Temporal_Gyrus_4 -194,R_Inferior_Temporal_Gyrus_4 -195,L_Inferior_Temporal_Gyrus_5 -196,R_Inferior_Temporal_Gyrus_5 -197,L_Superior_Temporal_Pole_Gyrus_1 -198,R_Superior_Temporal_Pole_Gyrus_1 -199,L_Superior_Temporal_Pole_Gyrus_2 -200,R_Superior_Temporal_Pole_Gyrus_2 -201,L_Middle_Temporal_Pole_Gyrus_1 -202,R_Middle_Temporal_Pole_Gyrus_1 -203,L_Middle_Temporal_Pole_Gyrus_2 -204,R_Middle_Temporal_Pole_Gyrus_2 -205,L_Middle_Temporal_Pole_Gyrus_3 -206,R_Middle_Temporal_Pole_Gyrus_3 -207,L_Superior_Medial_Frontal_Gyrus_1 -208,R_Superior_Medial_Frontal_Gyrus_1 -209,L_Superior_Medial_Frontal_Gyrus_2 -210,R_Superior_Medial_Frontal_Gyrus_2 -211,L_Superior_Medial_Frontal_Gyrus_3 -212,R_Superior_Medial_Frontal_Gyrus_3 -213,L_Anterior_Rostral_Sulcus_1 -214,R_Anterior_Rostral_Sulcus_1 -215,L_Medial_Frontal_Orbital_Gyrus_1 -216,R_Medial_Frontal_Orbital_Gyrus_1 -217,L_Medial_Frontal_Orbital_Gyrus_2 -218,R_Medial_Frontal_Orbital_Gyrus_2 -219,L_Subcallosal_Gyrus_1 -220,R_Subcallosal_Gyrus_1 -221,L_Supplementary_Motor_Area_Gyrus_1 -222,R_Supplementary_Motor_Area_Gyrus_1 -223,L_Supplementary_Motor_Area_Gyrus_2 -224,R_Supplementary_Motor_Area_Gyrus_2 -225,L_Supplementary_Motor_Area_Gyrus_3 -226,R_Supplementary_Motor_Area_Gyrus_3 -227,L_Cingulate_Sulcus_1 -228,R_Cingulate_Sulcus_1 -229,L_Cingulate_Sulcus_2 -230,R_Cingulate_Sulcus_2 -231,L_Cingulate_Sulcus_3 -232,R_Cingulate_Sulcus_3 -233,L_Cingulate_Sulcus_4 -234,R_Cingulate_Sulcus_4 -235,L_Cingulate_Sulcus_5 -236,R_Cingulate_Sulcus_5 -237,L_Cingulate_Sulcus_6 -238,R_Cingulate_Sulcus_6 -239,L_Cingulate_Sulcus_7 -240,R_Cingulate_Sulcus_7 -241,L_Anterior_Cingulum_Gyrus_1 -242,R_Anterior_Cingulum_Gyrus_1 -243,L_Anterior_Cingulum_Gyrus_2 -244,R_Anterior_Cingulum_Gyrus_2 -245,L_Middle_Cingulum_Gyrus_1 -246,R_Middle_Cingulum_Gyrus_1 -247,L_Middle_Cingulum_Gyrus_2 -248,R_Middle_Cingulum_Gyrus_2 -249,L_Middle_Cingulum_Gyrus_3 -250,R_Middle_Cingulum_Gyrus_3 -251,L_Posterior_Cingulum_Gyrus_1 -252,R_Posterior_Cingulum_Gyrus_1 -253,L_Posterior_Cingulum_Gyrus_2 -254,R_Posterior_Cingulum_Gyrus_2 -255,L_Posterior_Cingulum_Gyrus_3 -256,R_Posterior_Cingulum_Gyrus_3 -257,L_Paracentral_Lobule_Gyrus_1 -258,R_Paracentral_Lobule_Gyrus_1 -259,L_Paracentral_Lobule_Gyrus_2 -260,R_Paracentral_Lobule_Gyrus_2 -261,L_Paracentral_Lobule_Gyrus_3 -262,R_Paracentral_Lobule_Gyrus_3 -263,L_Paracentral_Lobule_Gyrus_4 -264,R_Paracentral_Lobule_Gyrus_4 -265,L_Precuneus_Gyrus_1 -266,R_Precuneus_Gyrus_1 -267,L_Precuneus_Gyrus_2 -268,R_Precuneus_Gyrus_2 -269,L_Precuneus_Gyrus_3 -270,R_Precuneus_Gyrus_3 -271,L_Precuneus_Gyrus_4 -272,R_Precuneus_Gyrus_4 -273,L_Precuneus_Gyrus_5 -274,R_Precuneus_Gyrus_5 -275,L_Precuneus_Gyrus_6 -276,R_Precuneus_Gyrus_6 -277,L_Precuneus_Gyrus_7 -278,R_Precuneus_Gyrus_7 -279,L_Precuneus_Gyrus_8 -280,R_Precuneus_Gyrus_8 -281,L_Precuneus_Gyrus_9 -282,R_Precuneus_Gyrus_9 -283,L_Parieto-Occipital_Sulcus_1 -284,R_Parieto-Occipital_Sulcus_1 -285,L_Parieto-Occipital_Sulcus_2 -286,R_Parieto-Occipital_Sulcus_2 -287,L_Parieto-Occipital_Sulcus_3 -288,R_Parieto-Occipital_Sulcus_3 -289,L_Parieto-Occipital_Sulcus_4 -290,R_Parieto-Occipital_Sulcus_4 -291,L_Parieto-Occipital_Sulcus_5 -292,R_Parieto-Occipital_Sulcus_5 -293,L_Parieto-Occipital_Sulcus_6 -294,R_Parieto-Occipital_Sulcus_6 -295,L_Cuneus_Gyrus_1 -296,R_Cuneus_Gyrus_1 -297,L_Cuneus_Gyrus_2 -298,R_Cuneus_Gyrus_2 -299,L_Calcarine_Gyrus_1 -300,R_Calcarine_Gyrus_1 -301,L_Calcarine_Gyrus_2 -302,R_Calcarine_Gyrus_2 -303,L_Calcarine_Gyrus_3 -304,R_Calcarine_Gyrus_3 -305,L_Lingual_Gyrus_1 -306,R_Lingual_Gyrus_1 -307,L_Lingual_Gyrus_2 -308,R_Lingual_Gyrus_2 -309,L_Lingual_Gyrus_3 -310,R_Lingual_Gyrus_3 -311,L_Lingual_Gyrus_4 -312,R_Lingual_Gyrus_4 -313,L_Lingual_Gyrus_5 -314,R_Lingual_Gyrus_5 -315,L_Lingual_Gyrus_6 -316,R_Lingual_Gyrus_6 -317,L_Hippocampus_Gyrus_1 -318,R_Hippocampus_Gyrus_1 -319,L_Hippocampus_Gyrus_2 -320,R_Hippocampus_Gyrus_2 -321,L_ParaHippocampal_Gyrus_1 -322,R_ParaHippocampal_Gyrus_1 -323,L_ParaHippocampal_Gyrus_2 -324,R_ParaHippocampal_Gyrus_2 -325,L_ParaHippocampal_Gyrus_3 -326,R_ParaHippocampal_Gyrus_3 -327,L_ParaHippocampal_Gyrus_4 -328,R_ParaHippocampal_Gyrus_4 -329,L_ParaHippocampal_Gyrus_5 -330,R_ParaHippocampal_Gyrus_5 -331,L_Fusiform_Gyrus_1 -332,R_Fusiform_Gyrus_1 -333,L_Fusiform_Gyrus_2 -334,R_Fusiform_Gyrus_2 -335,L_Fusiform_Gyrus_3 -336,R_Fusiform_Gyrus_3 -337,L_Fusiform_Gyrus_4 -338,R_Fusiform_Gyrus_4 -339,L_Fusiform_Gyrus_5 -340,R_Fusiform_Gyrus_5 -341,L_Fusiform_Gyrus_6 -342,R_Fusiform_Gyrus_6 -343,L_Fusiform_Gyrus_7 -344,R_Fusiform_Gyrus_7 -345,L_Amygdala_Nucleus_1 -346,R_Amygdala_Nucleus_1 -347,L_Caudate_Nucleus_1 -348,R_Caudate_Nucleus_1 -349,L_Caudate_Nucleus_2 -350,R_Caudate_Nucleus_2 -351,L_Caudate_Nucleus_3 -352,R_Caudate_Nucleus_3 -353,L_Caudate_Nucleus_4 -354,R_Caudate_Nucleus_4 -355,L_Caudate_Nucleus_5 -356,R_Caudate_Nucleus_5 -357,L_Caudate_Nucleus_6 -358,R_Caudate_Nucleus_6 -359,L_Caudate_Nucleus_7 -360,R_Caudate_Nucleus_7 -361,L_Pallidum_Nucleus_1 -362,R_Pallidum_Nucleus_1 -363,L_Putamen_Nucleus_2 -364,R_Putamen_Nucleus_2 -365,L_Putamen_Nucleus_3 -366,R_Putamen_Nucleus_3 -367,L_Thalamus_Nucleus_1 -368,R_Thalamus_Nucleus_1 -369,L_Thalamus_Nucleus_2 -370,R_Thalamus_Nucleus_2 -371,L_Thalamus_Nucleus_3 -372,R_Thalamus_Nucleus_3 -373,L_Thalamus_Nucleus_4 -374,R_Thalamus_Nucleus_4 -375,L_Thalamus_Nucleus_5 -376,R_Thalamus_Nucleus_5 -377,L_Thalamus_Nucleus_6 -378,R_Thalamus_Nucleus_6 -379,L_Thalamus_Nucleus_7 -380,R_Thalamus_Nucleus_7 -381,L_Thalamus_Nucleus_8 -382,R_Thalamus_Nucleus_8 -383,L_Thalamus_Nucleus_9 -384,R_Thalamus_Nucleus_9 diff --git a/atlases/label/Human/Anatomical-labels-csv/Brodmann.csv b/atlases/label/Human/Anatomical-labels-csv/Brodmann.csv deleted file mode 100644 index d4680aa..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Brodmann.csv +++ /dev/null @@ -1,42 +0,0 @@ -0,empty -1,Brodmann_area_1 -2,Brodmann_area_2 -3,Brodmann_area_3 -4,Brodmann_area_4 -5,Brodmann_area_5 -6,Brodmann_area_6 -7,Brodmann_area_7 -8,Brodmann_area_8 -9,Brodmann_area_9 -10,Brodmann_area_10 -11,Brodmann_area_11_12 -12,Brodmann_area_17 -13,Brodmann_area_18 -14,Brodmann_area_19 -15,Brodmann_area_20 -16,Brodmann_area_21 -17,Brodmann_area_22 -18,Brodmann_area_23_31 -19,Brodmann_area_24 -20,Brodmann_area_25 -21,Brodmann_area_26 -22,Brodmann_area_27 -23,Brodmann_area_28 -24,Brodmann_area_29 -25,Brodmann_area_30 -26,Brodmann_area_32_33 -27,Brodmann_area_34 -28,Brodmann_area_35 -29,Brodmann_area_36 -30,Brodmann_area_37 -31,Brodmann_area_38 -32,Brodmann_area_39 -33,Brodmann_area_40 -34,Brodmann_area_41 -35,Brodmann_area_42 -36,Brodmann_area_43 -37,Brodmann_area_44 -38,Brodmann_area_45 -39,Brodmann_area_46 -40,Brodmann_area_47 -41,Brodmann_area_16 diff --git a/atlases/label/Human/Anatomical-labels-csv/CAPRSC.csv b/atlases/label/Human/Anatomical-labels-csv/CAPRSC.csv deleted file mode 100644 index 4a697f6..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/CAPRSC.csv +++ /dev/null @@ -1,333 +0,0 @@ -1,L_Default_network_1, -2,L_Somatomotor_hand_2, -3,L_Somatomotor_mouth_3, -4,L_Default_network_4, -5,L_Visual_network_5, -6,L_Default_network_6, -7,L_FrontoParietal_network_7, -8,L_Visual_network_8, -9,L_FrontoParietal_network_9, -10,L_Auditory_network_10, -11,L_Unknown_11, -12,L_CinguloParietal_12, -13,L_RetrosplenialTemporal_13, -14,L_RetrosplenialTemporal_14, -15,L_Visual_network_15, -16,L_Visual_network_16, -17,L_Visual_network_17, -18,L_Unknown_18, -19,L_Unknown_19, -20,L_Visual_network_20, -21,L_Cingulo-opercular_network_21, -22,L_Cingulo-opercular_network_22, -23,L_Ventral_attention_23, -24,L_FrontoParietal_network_24, -25,L_Default_network_25, -26,L_Default_network_26, -27,L_Cingulo-opercular_network_27, -28,L_Cingulo-opercular_network_28, -29,L_Salience_29, -30,L_Somatomotor_hand_30, -31,L_Somatomotor_hand_31, -32,L_Somatomotor_hand_32, -33,L_Somatomotor_hand_33, -34,L_Cingulo-opercular_network_34, -35,L_Somatomotor_hand_35, -36,L_Somatomotor_hand_36, -37,L_Somatomotor_hand_37, -38,L_Somatomotor_hand_38, -39,L_Somatomotor_mouth_39, -40,L_Cingulo-opercular_network_40, -41,L_Dorsal_attention_41, -42,L_Dorsal_attention_42, -43,L_Dorsal_attention_43, -44,L_Default_network_44, -45,L_Somatomotor_hand_45, -46,L_Somatomotor_hand_46, -47,L_Somatomotor_hand_47, -48,L_Somatomotor_hand_48, -49,L_Dorsal_attention_49, -50,L_Somatomotor_hand_50, -51,L_Dorsal_attention_51, -52,L_Dorsal_attention_52, -53,L_Somatomotor_mouth_53, -54,L_Somatomotor_hand_54, -55,L_Dorsal_attention_55, -56,L_Somatomotor_hand_56, -57,L_Somatomotor_hand_57, -58,L_Somatomotor_hand_58, -59,L_Somatomotor_mouth_59, -60,L_Ventral_attention_60, -61,L_Ventral_attention_61, -62,L_Ventral_attention_62, -63,L_Cingulo-opercular_network_63, -64,L_Auditory_network_64, -65,L_Auditory_network_65, -66,L_Auditory_network_66, -67,L_Auditory_network_67, -68,L_Auditory_network_68, -69,L_Auditory_network_69, -70,L_Auditory_network_70, -71,L_Cingulo-opercular_network_71, -72,L_Cingulo-opercular_network_72, -73,L_Unknown_73, -74,L_Dorsal_attention_74, -75,L_Ventral_attention_75, -76,L_Cingulo-opercular_network_76, -77,L_Auditory_network_77, -78,L_FrontoParietal_network_78, -79,L_Ventral_attention_79, -80,L_Ventral_attention_80, -81,L_Cingulo-opercular_network_81, -82,L_Cingulo-opercular_network_82, -83,L_Salience_83, -84,L_Cingulo-opercular_network_84, -85,L_Ventral_attention_85, -86,L_Ventral_attention_86, -87,L_Dorsal_attention_87, -88,L_Dorsal_attention_88, -89,L_CinguloParietal_89, -90,L_Visual_network_90, -91,L_Dorsal_attention_91, -92,L_Dorsal_attention_92, -93,L_CinguloParietal_93, -94,L_Default_network_94, -95,L_Dorsal_attention_95, -96,L_FrontoParietal_network_96, -97,L_Visual_network_97, -98,L_Visual_network_98, -99,L_Visual_network_99, -100,L_Dorsal_attention_100, -101,L_Cingulo-opercular_network_101, -102,L_Auditory_network_102, -103,L_Cingulo-opercular_network_103, -104,L_Auditory_network_104, -105,L_Cingulo-opercular_network_105, -106,L_Dorsal_attention_106, -107,L_Dorsal_attention_107, -108,L_FrontoParietal_network_108, -109,L_FrontoParietal_network_109, -110,L_Dorsal_attention_110, -111,L_Cingulo-opercular_network_111, -112,L_Cingulo-opercular_network_112, -113,L_Dorsal_attention_113, -114,L_Default_network_114, -115,L_Unknown_115, -116,L_Default_network_116, -117,L_Default_network_117, -118,L_Unknown_118, -119,L_Unknown_119, -120,L_Unknown_120, -121,L_Unknown_121, -122,L_Unknown_122, -123,L_Unknown_123, -124,L_Unknown_124, -125,L_Unknown_125, -126,L_Default_network_126, -127,L_Default_network_127, -128,L_Unknown_128, -129,L_Unknown_129, -130,L_RetrosplenialTemporal_130, -131,L_Visual_network_131, -132,L_Visual_network_132, -133,L_Unknown_133, -134,L_Unknown_134, -135,L_Unknown_135, -136,L_Visual_network_136, -137,L_Visual_network_137, -138,L_Visual_network_138, -139,L_Visual_network_139, -140,L_Visual_network_140, -141,L_Visual_network_141, -142,L_Unknown_142, -143,L,RetrosplenialTemporal_143 -144,L_Unknown_144, -145,L_Default_network_145, -146,L_Default_network_146, -147,L_Cingulo-opercular_network_147, -148,L_FrontoParietal_network_148, -149,L_FrontoParietal_network_149, -150,L_Default_network_150, -151,L_Default_network_151, -152,L_Default_network_152, -153,L_Cingulo-opercular_network_153, -154,L_Default_network_154, -155,L_Dorsal_attention_155, -156,L_Default_network_156, -157,L_Default_network_157, -158,L_Ventral_attention_158, -159,L_Unknown_159, -160,L_Auditory_network_160, -161,L_Ventral_attention_161, -162,R_Default_network_162, -163,R_Somatomotor_hand_163, -164,R_Somatomotor_mouth_164, -165,R_Default_network_165, -166,R_Visual_network_166, -167,R_FrontoParietal_network_167, -168,R_FrontoParietal_network_168, -169,R_Visual_network_169, -170,R_FrontoParietal_network_170, -171,R_Auditory_network_171, -172,R_Unknown_172, -173,R_CinguloParietal_173, -174,R_RetrosplenialTemporal_174, -175,R_Visual_network_175, -176,R_Visual_network_176, -177,R_Visual_network_177, -178,R_Unknown_178, -179,R_Unknown_179, -180,R_Cingulo-opercular_network_180, -181,R_Cingulo-opercular_network_181, -182,R_FrontoParietal_network_182, -183,R_Salience_183, -184,R_Default_network_184, -185,R_Cingulo-opercular_network_185, -186,R_Default_network_186, -187,R_Cingulo-opercular_network_187, -188,R_Cingulo-opercular_network_188, -189,R_Dorsal_attention_189, -190,R_Somatomotor_hand_190, -191,R_Somatomotor_hand_191, -192,R_Cingulo-opercular_network_192, -193,R_Somatomotor_hand_193, -194,R_Somatomotor_hand_194, -195,R_Somatomotor_hand_195, -196,R_Cingulo-opercular_network_196, -197,R_Somatomotor_mouth_197, -198,R_Cingulo-opercular_network_198, -199,R_Dorsal_attention_199, -200,R_Default_network_200, -201,R_Somatomotor_hand_201, -202,R_Somatomotor_hand_202, -203,R_Dorsal_attention_203, -204,R_Somatomotor_hand_204, -205,R_Somatomotor_hand_205, -206,R_Somatomotor_hand_206, -207,R_Somatomotor_hand_207, -208,R_Dorsal_attention_208, -209,R_Somatomotor_hand_209, -210,R_Somatomotor_hand_210, -211,R_Dorsal_attention_211, -212,R_Somatomotor_mouth_212, -213,R_Somatomotor_hand_213, -214,R_Somatomotor_hand_214, -215,R_Somatomotor_hand_215, -216,R_Somatomotor_hand_216, -217,R_Somatomotor_hand_217, -218,R_Somatomotor_mouth_218, -219,R_Cingulo-opercular_network_219, -220,R_Default_network_220, -221,R_Ventral_attention_221, -222,R_Ventral_attention_222, -223,R_Cingulo-opercular_network_223, -224,R_Auditory_network_224, -225,R_Default_network_225, -226,R_Ventral_attention_226, -227,R_Auditory_network_227, -228,R_Ventral_attention_228, -229,R_Ventral_attention_229, -230,R_Auditory_network_230, -231,R_Ventral_attention_231, -232,R_Auditory_network_232, -233,R_Auditory_network_233, -234,R_Cingulo-opercular_network_234, -235,R_Cingulo-opercular_network_235, -236,R_Dorsal_attention_236, -237,R_Ventral_attention_237, -238,R_Cingulo-opercular_network_238, -239,R_Auditory_network_239, -240,R_FrontoParietal_network_240, -241,R_Ventral_attention_241, -242,R_Ventral_attention_242, -243,R_Ventral_attention_243, -244,R_Auditory_network_244, -245,R_Cingulo-opercular_network_245, -246,R_Cingulo-opercular_network_246, -247,R_Salience_247, -248,R_Cingulo-opercular_network_248, -249,R_Cingulo-opercular_network_249, -250,R_Dorsal_attention_250, -251,R_Visual_network_251, -252,R_Dorsal_attention_252, -253,R_Dorsal_attention_253, -254,R_CinguloParietal_254, -255,R_Visual_network_255, -256,R_Visual_network_256, -257,R_Default_network_257, -258,R_Visual_network_258, -259,R_Default_network_259, -260,R_FrontoParietal_network_260, -261,R_FrontoParietal_network_261, -262,R_Dorsal_attention_262, -263,R_Visual_network_263, -264,R_Visual_network_264, -265,R_Visual_network_265, -266,R_Dorsal_attention_266, -267,R_Visual_network_267, -268,R_Auditory_network_268, -269,R_Auditory_network_269, -270,R_Somatomotor_hand_270, -271,R_Dorsal_attention_271, -272,R_FrontoParietal_network_272, -273,R_FrontoParietal_network_273, -274,R_Cingulo-opercular_network_274, -275,R_Dorsal_attention_275, -276,R_FrontoParietal_network_276, -277,R_FrontoParietal_network_277, -278,R_Default_network_278, -279,R_Default_network_279, -280,R_Unknown_280, -281,R_Unknown_281, -282,R_Unknown_282, -283,R_Unknown_283, -284,R_Unknown_284, -285,R_Unknown_285, -286,R_Unknown_286, -287,R_Unknown_287, -288,R_Unknown_288, -289,R_Unknown_289, -290,R_Default_network_290, -291,R_Unknown_291, -292,R_Unknown_292, -293,R_Visual_network_293, -294,R_RetrosplenialTemporal_294, -295,R_RetrosplenialTemporal_295, -296,R_Unknown_296, -297,R_Unknown_297, -298,R_Visual_network_298, -299,R_Visual_network_299, -300,R_Unknown_300, -301,R_Unknown_301, -302,R_Unknown_302, -303,R_Unknown_303, -304,R_Unknown_304, -305,R_Unknown_305, -306,R_Unknown_306, -307,R_Visual_network_307, -308,R_Visual_network_308, -309,R_Visual_network_309, -310,R_Visual_network_310, -311,R_Visual_network_311, -312,R_Unknown_312, -313,R_RetrosplenialTemporal_313, -314,R_Unknown_314, -315,R_Default_network_315, -316,R_Default_network_316, -317,R_Cingulo-opercular_network_317, -318,R_Cingulo-opercular_network_318, -319,R_FrontoParietal_network_319, -320,R_FrontoParietal_network_320, -321,R_Default_network_321, -322,R_Default_network_322, -323,R_Default_network_323, -324,R_Default_network_324, -325,R_Default_network_325, -326,R_Default_network_326, -327,R_FrontoParietal_network_327, -328,R_FrontoParietal_network_328, -329,R_Auditory_network_329, -330,R_Auditory_network_330, -331,R_Default_network_331, -332,R_Ventral_attention_332, -333,R_Ventral_attention_333, diff --git a/atlases/label/Human/Anatomical-labels-csv/Desikan.csv b/atlases/label/Human/Anatomical-labels-csv/Desikan.csv deleted file mode 100644 index a898bdc..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Desikan.csv +++ /dev/null @@ -1,70 +0,0 @@ -1,L_white_matter -2,L_Banks_superior_temporal_sulcus -3,L_caudal_anterior_cingulate_cortex -4,L_caudal_middle_frontal_gyrus -5,L_corpus_calosum -6,L_cuneus_cortex -7,L_entorhinal_cortex -8,L_fusiform_gyrus -9,L_inferior_parietal_cortex -10,L_inferior_temporal_gyrus -11,L_isthmus-cingulate_cortex -12,L_lateral_occipital_cortex -13,L_lateral_orbitofrontal_cortex -14,L_lingual_gyrus -15,L_medial_orbitofrontal_cortex -16,L_middle_temporal_gyrus -17,L_parahippocampal_gyrus -18,L_paracentral_lobule -19,L_pars_opercularis -20,L_pars_orbitalis -21,L_pars_triangularis -22,L_pericalcarine_cortex -23,L_postcentral_gyrus -24,L_posterior-cingulate_cortex -25,L_precentral_gyrus -26,L_precuneus_cortex -27,L_rostral_anterior_cingulate_cortex -28,L_rostral_middle_frontal_gyrus -29,L_superior_frontal_gyrus -30,L_superior_parietal_cortex -31,L_superior_temporal_gyrus -32,L_supramarginal_gyrus -33,L_frontal_pole -34,L_temporal_pole -35,L_transverse_temporal_cortex -36,R_white_matter -37,R_Banks_superior_temporal_sulcus -38,R_caudal_anterior_cingulate_cortex -39,R_caudal_middle_frontal_gyrus -40,R_corpus_calosum -41,R_cuneus_cortex -42,R_entorhinal_cortex -43,R_fusiform_gyrus -44,R_inferior_parietal_cortex -45,R_inferior_temporal_gyrus -46,R_isthmus-cingulate_cortex -47,R_lateral_occipital_cortex -48,R_lateral_orbitofrontal_cortex -49,R_lingual_gyrus -50,R_medial_orbitofrontal_cortex -51,R_middle_temporal_gyrus -52,R_parahippocampal_gyrus -53,R_paracentral_lobule -54,R_pars_opercularis -55,R_pars_orbitalis -56,R_pars_triangularis -57,R_pericalcarine_cortex -58,R_postcentral_gyrus -59,R_posterior-cingulate_cortex -60,R_precentral_gyrus -61,R_precuneus_cortex -62,R_rostral_anterior_cingulate_cortex -63,R_rostral_middle_frontal_gyrus -64,R_superior_frontal_gyrus -65,R_superior_parietal_cortex -66,R_superior_temporal_gyrus -67,R_supramarginal_gyrus -68,R_frontal_pole -69,R_temporal_pole -70,R_transverse_temporal_cortex diff --git a/atlases/label/Human/Anatomical-labels-csv/Destrieux.csv b/atlases/label/Human/Anatomical-labels-csv/Destrieux.csv deleted file mode 100644 index 013ae38..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Destrieux.csv +++ /dev/null @@ -1,76 +0,0 @@ -0,null -1,Fronto-marginal_gyrus+sulcus -2,Inferior_occipital_gyrus+sulcus -3,Paracentral_lobule+sulcus -4,Subcentral_gyrus+sulci -5,Transverse_frontopolar_gyri+sulci -6,Cingulate_gyrus+sulcus_anterior_part -7,Cingulate_gyrus+sulcus_middle-anterior_part -8,Cingulate_gyrus+sulcus_middle-posterior_part -9,Cingulate_gyrus_posterior-dorsal_part -10,Cingulate_gyrus_posterior-ventral_part -11,Cuneus -12,Inferior_frontal_gyrus_opercular_part -13,Inferior_frontal_gyrus_orbital_part -14,Inferior_frontal_gyrus_triangular_part -15,Middle_frontal_gyrus -16,Superior_frontal_gyrus -17,Insula_insular_gyrus+central_sulcus -18,Insular_gyri_short -19,Middle_occipital_gyrus -20,Superior_occipital_gyrus -21,Lateral_occipito-temporal_gyrus -22,Lingual_gyrus -23,Parahippocampal_gyrus -24,Orbital_gyri -25,Angular_gyrus -26,Supramarginal_gyrus -27,Superior_parietal_lobule -28,Postcentral_gyrus -29,Precentral_gyrus -30,Precuneus -31,Straight_gyrus -32,Subcallosal_area+gyrus -33,Anterior_transverse_temporal_gyrus -34,Superior_temporal_gyrus_lateral_aspect -35,Superior_temporal_gyrus_planum_polare -36,Planum_temporale -37,Inferior_temporal_gyrus -38,Middle_temporal_gyrus -39,Anterior_segment_of_lateral_sulcus_horizontal_ramus -40,Anterior_segment_of_lateral_sulcus_vertical_ramus -41,Lateral_sulcus_posterior_ramus -42,null -43,Occipital_pole -44,Temporal_pole -45,Calcarine_sulcus -46,Central_sulcus -47,Cingulate_sulcus_marginal_branch -48,Insula_circular_sulcus_anterior_part -49,Insula_circular_sulcus_inferior_part -50,Insula_circular_sulcus_superior_part -51,Anterior_transverse_collateral_sulcus -52,Posterior_transverse_collateral_sulcus -53,Inferior_frontal_sulcus -54,Middle_frontal_sulcus -55,Superior_frontal_sulcus -56,Sulcus_intermedius_primus -57,Intraparietal_sulcus+transverse_parietal_sulci -58,Middle_occipital+lunatus_sulcus -59,Superior+transverse_occipital_sulcus -60,Anterior_occipital_sulcus+preoccipital_notch -61,Lateral_occipito-temporal_sulcus -62,Collateral+lingual_sulcus -63,Lateral_orbital_sulcus -64,Olfactory_sulcus -65,Orbital_sulci -66,Parieto-occipital_sulcus -67,Pericallosal_sulcus -68,Postcentral_sulcus -69,Precentral_sulcus_inferior_part -70,Precentral_sulcus_superior_part -71,Suborbital_sulcus -72,Subparietal_sulcus -73,Inferior_temporal_sulcus -74,Superior_temporal_sulcus -75,Transverse_temporal_sulcus diff --git a/atlases/label/Human/Anatomical-labels-csv/Glasser.csv b/atlases/label/Human/Anatomical-labels-csv/Glasser.csv deleted file mode 100644 index c86ca0d..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Glasser.csv +++ /dev/null @@ -1,180 +0,0 @@ -1,Primary_visual_cortex -2,Medial_superior_temporal_area -3,Sixth_Visual_Area -4,Second_Visual_Area -5,Third_Visual_Area -6,Forth_Visual_Area -7,Eighth_Visual_Area -8,Primary_Motor_Cortex -9,Primary_Sensory_Cortex -10,Frontal_Eye_Field -11,Premotor_Eye_Field -12,Area_55b -13,Area_V3A -14,RetroSplenial_Complex -15,Parieto-Occipital_Sulcus_Area_2 -16,Seventh_Visual_Area -17,IntraParietal_Sulcus_Area_1 -18,Fusiform_Face_Complex -19,Area_V3B -20,Lateral_Occipital_Area_1 -21,Lateral_Occipital_Area_2 -22,Posterior_InferoTemporal_Complex -23,Middle_Temporal_Area -24,Primary_Auditory_Cortex -25,PeriSylvian_Language_Area -26,Superior_Frontal_Language_Area -27,PreCuneus_Visual_Area -28,Superior_Temporal_Visual_Area -29,Medial_Area_7P -30,Area_7m -31,Parieto-Occipital_Sulcus_Area_1 -32,Area_23d -33,Area_Ventral_23_a+b -34,Area_Dorsal_23_a+b -35,Area_31p_Ventral -36,Area_5m -37,Area_5m_ventral -38,Area_23c -39,Area_5L -40,Dorsal_Area_24d -41,Lateral_Area_7A -42,Supplementary_and_Cingulate_Eye_Field -43,Area_6m_Anterior -44,Medial_6m_anterior -45,Medial_Area_7A -46,Lateral_Area_7P -47,Area_7PC -48,Area_Lateral_IntraParietal_ventral -49,Ventral_IntraParietal_Complex -50,Medial_IntraParietal_Area -51,Area_1 -52,Area_2 -53,Area_3a -54,Dorsal_area_6 -55,Area_6mp -56,Ventral_Area_6 -57,Area_Posterior_24 -58,Area_33_prime -59,Anterior_24_prime -60,Area_p32_prime -61,Area_a24 -62,Area_dorsal_32 -63,Area_8BM -64,Area_p32 -65,Area_10r -66,Area_47m -67,Area_8Av -68,Area_8Ad -69,Area_9_Middle -70,Area_8B_Lateral -71,Area_9_Posterior -72,Area_10d -73,Area_8C -74,Area_44 -75,Area_45 -76,Area_47L -77,Area_anterior_47R -78,Rostral_Area_6 -79,Area_IFJa -80,Area_IFJp -81,Area_IFSp -82,Area_IFSa -83,Area_posterior_9-46v -84,Area_46 -85,Area_anterior_9-46v -86,Area_9-46d -87,Area_9_anterior -88,Area_10v -89,Area_anterior_10p -90,Polar_10p -91,Area_11 -92,Area_13 -93,Orbital_Frontal_Complex -94,Area_47s -95,Area_Lateral_IntraParietal_dorsal -96,Area_6_anterior -97,Inferior_6-8_Transitional_Area -98,Superior_6-8_Transitional_Area -99,Area_43 -100,Area_OP4/PV -101,Area_OP1/SII -102,Area_OP2-3/VS -103,Area_52 -104,RetroInsular_Cortex -105,Area_PFcm -106,Posterior_Insular_Area_2 -107,Area_TA2 -108,Frontal_OPercular_Area_4 -109,Middle_Insular_Area -110,Pirform_Cortex -111,Anterior_Ventral_Insular_Area -112,Anterior_Agranular_Insula_Complex -113,Frontal_OPercular_Area_1 -114,Frontal_OPercular_Area_3 -115,Frontal_OPercular_Area_2 -116,Area_PFt -117,Anterior_IntraParietal_Area -118,Entorhinal_Cortex -119,PreSubiculum -120,Hippocampus -121,ProStraite_Area -122,Perirhinal_Ectorhinal_Cortex -123,Area_STGa -124,ParaBelt_Complex -125,Auditory_5_Complex -126,ParaHippocampal_Area_1 -127,ParaHippocampal_Area_3 -128,Area_STSd_Anterior -129,Area_STSd_Posterior -130,Area_STSv_Posterior -131,Area_TG_Dorsal -132,Area_TE1_Anterior -133,Area_TE1_Posterior -134,Area_TE2_Anterior -135,Area_TF -136,Area_TE2_Posterior -137,Area_PHT -138,Area_PH -139,Area_TemporoParietoOccipital_Junction_1 -140,Area_TemporoParietoOccipital_Junction_2 -141,Area_TemporoParietoOccipital_Junction_3 -142,Dorsal_Transitional_Visual_Area -143,Area_PGp -144,Area_IntraParietal_2 -145,Area_IntraParietal_1 -146,Area_IntraParietal_0 -147,Area_PF_Opercular -148,Area_PF_Complex -149,Area_PFm_Complex -150,Area_PGi -151,Area_PGs -152,Area_V6A -153,VentroMedial_Visual_Area_1 -154,VentroMedial_Visual_Area_3 -155,ParaHippocampal_Area_2 -156,Area_V4t -157,Area_FST -158,Area_V3CD -159,Area_Lateral_Occipital_3 -160,VentroMedial_Visual_Area_2 -161,Area_31pd -162,Area_31a -163,Ventral_Visual_Complex -164,Area_25 -165,Area_s32 -166,Posterior_OFC_Complex -167,Area_Posterior_Insular_1 -168,Insular_Granular_Complex -169,Area_Frontal_Opercular_5 -170,Area_Posterior_10p -171,Area_Posterior_47r -172,Area_TG_ventral -173,Medial_Belt_Complex -174,Lateral_Belt_Complex -175,Auditory_4_Complex -176,Area_STSv_Anterior -177,Area_TE1_Middle -178,Para-Insular_Area -179,Area_Anterior_32_Prime -180,Area_Posterior_24 diff --git a/atlases/label/Human/Anatomical-labels-csv/Hammersmith.csv b/atlases/label/Human/Anatomical-labels-csv/Hammersmith.csv deleted file mode 100644 index 4bca7c2..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Hammersmith.csv +++ /dev/null @@ -1,83 +0,0 @@ -1,R_Hippocampus -2,L_Hippocampus -3,R_Amygdala -4,L_Amygdala -5,R_Anterior_temporal_lobe_medial_part -6,L_Anterior_temporal_lobe_medial_part -7,R_Anterior_temporal_lobe_lateral_part -8,L_Anterior_temporal_lobe_lateral_part -9,R_Parahippocampal_and_ambient_gyri -10,L_Parahippocampal_and_ambient_gyri -11,R_Superior_temporal_gyrus_posterior_part -12,L_Superior_temporal_gyrus_posterior_part -13,R_Middle_and_inferior_temporal_gyrus -14,L_Middle_and_inferior_temporal_gyrus -15,R_Fusiform_gyrus -16,L_Fusiform_gyrus -17,R_Cerebellum -18,L_Cerebellum -19,Brainstem -20,L_Insula -21,R_Insula -22,L_Lateral_remainder_occipital_lobe -23,R_Lateral_remainder_occipital_lobe -24,L_Cingulate_gyrus_anterior_part -25,R_Cingulate_gyrus_anterior_part -26,L_Cingulate_gyrus_posterior_part -27,R_Cingulate_gyrus_posterior_part -28,L_Middle_frontal_gyrus -29,R_Middle_frontal_gyrus -30,L_Posterior_temporal_lobe -31,R_Posterior_temporal_lobe -32,L_Inferiolateral_remainder_parietal_lobe -33,R_Inferiolateral_remainder_parietal_lobe -34,L_Caudate_nucleus -35,R_Caudate_nucleus -36,L_Nucleus_accumbens -37,R_Nucleus_accumbens -38,L_Putamen -39,R_Putamen -40,L_Thalamus -41,R_Thalamus -42,L_Pallidum -43,R_Pallidum -44,Corpus_callosum -45,R_Lateral_ventricle_no_temporal_horn -46,L_Lateral_ventricle_no_temporal_horn -47,R_Lateral_ventricle_temporal_horn -48,L_Lateral_ventricle_temporal_horn -49,Third_ventricle -50,L_Precentral_gyrus -51,R_Precentral_gyrus -52,L_Straight_gyrus -53,R_Straight_gyrus -54,L_Anterior_orbital_gyrus -55,R_Anterior_orbital_gyrus -56,L_Inferior_frontal_gyrus -57,R_Inferior_frontal_gyrus -58,L_Superior_frontal_gyrus -59,R_Superior_frontal_gyrus -60,L_Postcentral_gyrus -61,R_Postcentral_gyrus -62,L_Superior_parietal_gyrus -63,R_Superior_parietal_gyrus -64,L_Lingual_gyrus -65,R_Lingual_gyrus -66,L_Cuneus -67,R_Cuneus -68,L_Medial_orbital_gyrus -69,R_Medial_orbital_gyrus -70,L_Lateral_orbital_gyrus -71,R_Lateral_orbital_gyrus -72,L_Posterior_orbital_gyrus -73,R_Posterior_orbital_gyrus -74,L_Substantia_nigra -75,R_Substantia_nigra -76,L_Subgenual_frontal_cortex -77,R_Subgenual_frontal_cortex -78,L_Subcallosal_area -79,R_Subcallosal_area -80,L_Pre-subgenual_frontal_cortex -81,R_Pre-subgenual_frontal_cortex -82,L_Superior_temporal_gyrus_anterior_part -83,R_Superior_temporal_gyrus_anterior_part diff --git a/atlases/label/Human/Anatomical-labels-csv/HarvardOxfordcort-maxprob.csv b/atlases/label/Human/Anatomical-labels-csv/HarvardOxfordcort-maxprob.csv deleted file mode 100644 index 8f0b90c..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/HarvardOxfordcort-maxprob.csv +++ /dev/null @@ -1,49 +0,0 @@ -0,null -1,Frontal_Pole -2,Insular_Cortex -3,Superior_Frontal_Gyrus -4,Middle_Frontal_Gyrus -5,Inferior_Frontal_Gyrus_pars_triangularis -6,Inferior_Frontal_Gyrus_pars_opercularis -7,Subcallosal_Cortex -8,Temporal_Pole -9,Superior_Temporal_Gyrus_anterior_division -10,Superior_Temporal_Gyrus_posterior_division -11,Middle_Temporal_Gyrus_anterior_division -12,Middle_Temporal_Gyrus_posterior_division -13,Middle_Temporal_Gyrus_temporoocipital_part -14,Inferior_Temporal_Gyrus_anterior_division -15,Inferior_Temporal_Gyrus_posterior_division -16,Inferior_Temporal_Gyrus_temporoocipital_part -17,Postcentral_Gyrus -18,Superior_Parietal_Lobule -19,Supramarginal_Gyrus_anterior_division -20,Supramarginal_Gyrus_posterior_division -21,Angular_Gyrus -22,Lateral_Occipital_Cortex_superior_division -23,Lateral_Occipital_Cortex_inferior_division -24,Intracalcaring_Cortex -25,Frontal_Medial_Cortex -26,Justapositional_Lobule_Cortex_(formerly_Supplementary_Motor_Cortex) -27,Subcallosal_Cortex -28,Paracingulate_Gyrus -29,Cingulate_Gyrus_anterior_division -30,Cingulate_Gyrus_posterior_division -31,Precuneous_Cortex -32,Cuneal_Cortex -33,Frontal_Orbital_Cortex -34,Parahippocampal_Gyrus_anterior_division -35,Parahippocampal_Gyrus_posterior_division -36,Lingual_Gyrus -37,Temporal_Fusiform_Cortex_anterior_division -38,Temporal_Fusiform_Cortex_posterior_division -39,Temporal_Occipital_Fusiform_Cortex -40,Occipital_Fusiform_Gyrus -41,Frontal_Operculum_Cortex -42,Central_Opercular_Cortex -43,Parietal_Operculum_Cortex -44,Planum_Polare -45,Heschl's_Gyrus_(includes_H1_and_H2) -46,Planum_Temporale -47,Supracalcarine_Cortex -48,Occipital_Pole diff --git a/atlases/label/Human/Anatomical-labels-csv/HarvardOxfordsub-maxprob.csv b/atlases/label/Human/Anatomical-labels-csv/HarvardOxfordsub-maxprob.csv deleted file mode 100644 index bfd6c59..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/HarvardOxfordsub-maxprob.csv +++ /dev/null @@ -1,22 +0,0 @@ -0,null -1,Right_Cerebral_White_Matter -2,Right_Cerebral_Cortex -3,Right_Lateral_Ventricle -4,Right_Thalamus -5,Right_Caudate -6,Right_Putamen -7,Right_Pallidum -8,Brain-Stem -9,Right_Hippocampus -10,Right_Amygdala -11,Right_Accumbens -12,Left_Cerebral_White_Matter -13,Left_Cerebral_Cortex -14,Left_Lateral_Ventricle -15,Left_Thalamus -16,Left_Caudate -17,Left_Putamen -18,Left_Pallidum -19,Left_Hippocampus -20,Left_Amygdala -21,Left_Accumbens diff --git a/atlases/label/Human/Anatomical-labels-csv/Hemisphere.csv b/atlases/label/Human/Anatomical-labels-csv/Hemisphere.csv deleted file mode 100644 index 4b98a48..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Hemisphere.csv +++ /dev/null @@ -1,3 +0,0 @@ -0,empty -1,R_hemisphere -2,L_hemisphere diff --git a/atlases/label/Human/Anatomical-labels-csv/JHU.csv b/atlases/label/Human/Anatomical-labels-csv/JHU.csv deleted file mode 100644 index 8cb346e..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/JHU.csv +++ /dev/null @@ -1,48 +0,0 @@ -1,Middle_Cerebellar_Peduncle -2,Pontine_Crossing_Tract -3,Corpus_Callosum_Genu -4,Body_of_corpus_callosum -5,Corpus_Callosum_Splenium -6,Fornix_Column+Body -7,R_Corticospinal_Tract -8,L_Corticospinal_Tract -9,R_Medial_Lemniscus -10,L_Medial_Lemniscus -11,R_Inferior_Cerebellar_Peduncle -12,L_Inferior_Cerebellar_Peduncle -13,R_Superior_Cerebellar_Peduncle -14,L_Superior_Cerebellar_Peduncle -15,R_Cerebral_Peduncle -16,L_Cerebral_Peduncle -17,R_Internal_Capsule_Anterior_Limb -18,L_Internal_Capsule_Anterior_Limb -19,R_Internal_Capsule_Posterior_Limb -20,L_Internal_Capsule_Posterior_Limb -21,R_Internal_Capsule_Retrolenticular_Part -22,L_Internal_Capsule_Retrolenticular_Part -23,R_Anterior_Corona_Radiata -24,L_Anterior_Corona_Radiata -25,R_Superior_Corona_Radiata -26,L_Superior_Corona_Radiata -27,R_Posterior_Corona_Radiata -28,L_Posterior_Corona_Radiata -29,R_Posterior_Thalamic+Optic_Radiation -30,L_Posterior_Thalamic+Optic_Radiation -31,R_Sagittal_Stratum -32,L_Sagittal_Stratum -33,R_External_Capsule -34,L_External_Capsule -35,R_Cingulum_(Cingulate_Gyrus) -36,L_Cingulum_(Cingulate_Gyrus) -37,R_Cingulum_(Hippocampus) -38,L_Cingulum_(Hippocampus) -39,R_Fornix_(Cres)+Stria_Terminalis -40,L_Fornix_(Cres)+Stria_Terminalis -41,R_Superior_Longitudinal_Fasciculus -42,L_Superior_Longitudinal_Fasciculus -43,R_Superior_Fronto-occipital_Fasciculus -44,L_Superior_Fronto-occipital_Fasciculus -45,R_Uncinate_Fasciculus -46,L_Uncinate_Fasciculus -47,R_Tapetum -48,L_Tapetum diff --git a/atlases/label/Human/Anatomical-labels-csv/Juelich.csv b/atlases/label/Human/Anatomical-labels-csv/Juelich.csv deleted file mode 100644 index e617261..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Juelich.csv +++ /dev/null @@ -1,104 +0,0 @@ -0,empty -1,L_Anterior_intra-parietal_sulcus_hIP1 -2,R_Anterior_intra-parietal_sulcus_hIP1 -3,L_Anterior_intra-parietal_sulcus_hIP2 -4,R_Anterior_intra-parietal_sulcus_hIP2 -5,L_Anterior_intra-parietal_sulcus_hIP3 -6,R_Anterior_intra-parietal_sulcus_hIP3 -7,L_Amygdala_centromedial_group -8,R_Amygdala_centromedial_group -9,L_Amygdala_laterobasal_group -10,R_Amygdala_laterobasal_group -11,L_Amygdala_superficial_group -12,R_Amygdala_superficial_group -13,L_Broca's_area_BA44 -14,R_Broca's_area_BA44 -15,L_Broca's_area_BA45 -16,R_Broca's_area_BA45 -17,L_Hippocampus_cornu_ammonis -18,R_Hippocampus_cornu_ammonis -19,L_Hippocampus_entorhinal_cortex -20,R_Hippocampus_entorhinal_cortex -21,L_Hippocampus_dentate_gyrus -22,R_Hippocampus_dentate_gyrus -23,L_Hippocampus_hippocampal-amygdaloid_transition_area -24,R_Hippocampus_hippocampal-amygdaloid_transition_area -25,L_Hippocampus_subiculum -26,R_Hippocampus_subiculum -27,L_Inferior_parietal_lobule_PF -28,R_Inferior_parietal_lobule_PF -29,L_Inferior_parietal_lobule_PFcm -30,R_Inferior_parietal_lobule_PFcm -31,L_Inferior_parietal_lobule_PFm -32,R_Inferior_parietal_lobule_PFm -33,L_Inferior_parietal_lobule_PFop -34,R_Inferior_parietal_lobule_PFop -35,L_Inferior_parietal_lobule_PFt -36,R_Inferior_parietal_lobule_PFt -37,L_Inferior_parietal_lobule_Pga -38,R_Inferior_parietal_lobule_Pga -39,L_Inferior_parietal_lobule_PGp -40,R_Inferior_parietal_lobule_PGp -41,L_Primary_auditory_cortex_TE1.0 -42,R_Primary_auditory_cortex_TE1.0 -43,L_Primary_auditory_cortex_TE1.1 -44,R_Primary_auditory_cortex_TE1.1 -45,L_Primary_auditory_cortex_TE1.2 -46,R_Primary_auditory_cortex_TE1.2 -47,L_Primary_motor_cortex_BA4a -48,R_Primary_motor_cortex_BA4a -49,L_Primary_motor_cortex_BA4p -50,R_Primary_motor_cortex_BA4p -51,L_Primary_somatosensory_cortex_BA1 -52,R_Primary_somatosensory_cortex_BA1 -53,L_Primary_somatosensory_cortex_BA2 -54,R_Primary_somatosensory_cortex_BA2 -55,L_Primary_somatosensory_cortex_BA3a -56,R_Primary_somatosensory_cortex_BA3a -57,L_Primary_somatosensory_cortex_BA3b -58,R_Primary_somatosensory_cortex_BA3b -59,L_Secondary_somatosensory_cortex_Parietal_operculum_OP1 -60,R_Secondary_somatosensory_cortex_Parietal_operculum_OP1 -61,L_Secondary_somatosensory_cortex_Parietal_operculum_OP2 -62,R_Secondary_somatosensory_cortex_Parietal_operculum_OP2 -63,L_Secondary_somatosensory_cortex_Parietal_operculum_OP3 -64,R_Secondary_somatosensory_cortex_Parietal_operculum_OP3 -65,L_Secondary_somatosensory_cortex_Parietal_operculum_OP4 -66,R_Secondary_somatosensory_cortex_Parietal_operculum_OP4 -67,L_Superior_parietal_lobule_5Ci -68,R_Superior_parietal_lobule_5Ci -69,L_Superior_parietal_lobule_5L -70,R_Superior_parietal_lobule_5L -71,L_Superior_parietal_lobule_5M -72,R_Superior_parietal_lobule_5M -73,L_Superior_parietal_lobule_7A -74,R_Superior_parietal_lobule_7A -75,L_Superior_parietal_lobule_7M -76,R_Superior_parietal_lobule_7M -77,L_Superior_parietal_lobule_7PC -78,R_Superior_parietal_lobule_7PC -79,L_Superior_parietal_lobule_7P -80,R_Superior_parietal_lobule_7P -81,L_Visual_cortex_V1_BA17 -82,R_Visual_cortex_V1_BA17 -83,L_Visual_cortex_V2_BA18 -84,R_Visual_cortex_V2_BA18 -85,L_Visual_cortex_V3V -86,R_Visual_cortex_V3V -87,L_Visual_cortex_V4 -88,R_Visual_cortex_V4 -89,L_Visual_cortex_V5 -90,R_Visual_cortex_V5 -91,L_Premotor_cortex_BA6 -92,R_Premotor_cortex_BA6 -93,R_Lateral_geniculate_body -94,L_Lateral_geniculate_body -95,R_Medial_geniculate_body -96,L_Medial_geniculate_body -97,L_Insula_Id1 -98,R_Insula_Id1 -99,L_Insula_Ig1 -100,R_Insula_Ig1 -101,L_Insula_Ig2 -102,R_Insula_Ig2 -103,Mamillary_body diff --git a/atlases/label/Human/Anatomical-labels-csv/Princetonvisual.csv b/atlases/label/Human/Anatomical-labels-csv/Princetonvisual.csv deleted file mode 100644 index 00e927f..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Princetonvisual.csv +++ /dev/null @@ -1,50 +0,0 @@ -0,null -1,L_V1v -2,L_V1d -3,L_V2v -4,L_V2d -5,L_V3v -6,L_V3d -7,L_hV4 -8,L_VO1 -9,L_VO2 -10,L_PHC1 -11,L_PHC2 -12,L_MST -13,L_hMT -14,L_LO2 -15,L_LO1 -16,L_V3b -17,L_V3a -18,L_IPS0 -19,L_IPS1 -20,L_IPS2 -21,L_IPS3 -22,L_IPS4 -23,L_SPL1 -24,L_FEF -25,R_V1v -26,R_V1d -27,R_V2v -28,R_V2d -29,R_V3v -30,R_V3d -31,R_hV4 -32,R_VO1 -33,R_VO2 -34,R_PHC1 -35,R_PHC2 -36,R_MST -37,R_hMT -38,R_LO2 -39,R_LO1 -40,R_V3b -41,R_V3a -42,R_IPS0 -43,R_IPS1 -44,R_IPS2 -45,R_IPS3 -46,R_IPS4 -47,R_IPS5 -48,R_SPL1 -49,R_FEF diff --git a/atlases/label/Human/Anatomical-labels-csv/Tissue.csv b/atlases/label/Human/Anatomical-labels-csv/Tissue.csv deleted file mode 100644 index b22c472..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Tissue.csv +++ /dev/null @@ -1,4 +0,0 @@ -0,null+csf -1,Gray_Matter -2,Gray_Matter_White_Matter_Boundary -3,White_Matter diff --git a/atlases/label/Human/Anatomical-labels-csv/Yeo-17-liberal.csv b/atlases/label/Human/Anatomical-labels-csv/Yeo-17-liberal.csv deleted file mode 100644 index 073469f..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Yeo-17-liberal.csv +++ /dev/null @@ -1,18 +0,0 @@ -0,empty -1,1_Visual_A -2,2_Visual_B -3,3_Somatomotor_A -4,4_Somatomotor_B -5,5_Temporal_Parietal -6,6_Frontoparietal_Area -7,7_Dorsal_Attention_B -8,8_Salience+Ventral_Attention_A -9,9_Salience+Ventral_Attention_B -10,10_Control_A -11,11_Control_B -12,12_Control_C -13,13_Default_A -14,14_Default_B -15,15_Default_C -16,16_Limbic_A -17,17_Limbic_B diff --git a/atlases/label/Human/Anatomical-labels-csv/Yeo-17.csv b/atlases/label/Human/Anatomical-labels-csv/Yeo-17.csv deleted file mode 100644 index 073469f..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Yeo-17.csv +++ /dev/null @@ -1,18 +0,0 @@ -0,empty -1,1_Visual_A -2,2_Visual_B -3,3_Somatomotor_A -4,4_Somatomotor_B -5,5_Temporal_Parietal -6,6_Frontoparietal_Area -7,7_Dorsal_Attention_B -8,8_Salience+Ventral_Attention_A -9,9_Salience+Ventral_Attention_B -10,10_Control_A -11,11_Control_B -12,12_Control_C -13,13_Default_A -14,14_Default_B -15,15_Default_C -16,16_Limbic_A -17,17_Limbic_B diff --git a/atlases/label/Human/Anatomical-labels-csv/Yeo-7-liberal.csv b/atlases/label/Human/Anatomical-labels-csv/Yeo-7-liberal.csv deleted file mode 100644 index 127b50a..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Yeo-7-liberal.csv +++ /dev/null @@ -1,8 +0,0 @@ -0,empty -1,1_Visual_Area -2,2_Somatomotor_Area -3,3_Dorsal_Area -4,4_Ventral_Area -5,5_Lymbic_Area -6,6_Frontoparietal_Area -7,7_Default_Network_Area diff --git a/atlases/label/Human/Anatomical-labels-csv/Yeo-7.csv b/atlases/label/Human/Anatomical-labels-csv/Yeo-7.csv deleted file mode 100644 index 127b50a..0000000 --- a/atlases/label/Human/Anatomical-labels-csv/Yeo-7.csv +++ /dev/null @@ -1,8 +0,0 @@ -0,empty -1,1_Visual_Area -2,2_Somatomotor_Area -3,3_Dorsal_Area -4,4_Ventral_Area -5,5_Lymbic_Area -6,6_Frontoparietal_Area -7,7_Default_Network_Area diff --git a/atlases/label/Human/atlas-AAL_dseg.tsv b/atlases/label/Human/atlas-AAL_dseg.tsv new file mode 100644 index 0000000..8b1d83f --- /dev/null +++ b/atlases/label/Human/atlas-AAL_dseg.tsv @@ -0,0 +1,121 @@ +index label hemisphere +1 L_Precentral_gyrus left +2 R_Precentral_gyrus right +3 L_Superior_frontal_gyrus_dorsolateral left +4 R_Superior_frontal_gyrus_dorsolateral right +5 L_Middle_frontal_gyrus left +6 R_Middle_frontal_gyrus right +7 L_Inferior_frontal_gyrus_triangular_part left +8 R_Inferior_frontal_gyrus_triangular_part right +9 L_Inferior_frontal_gyrus_opercular_part left +10 R_Inferior_frontal_gyrus_opercular_part right +11 L_Inferior_frontal_gyrus_orbital_part left +12 R_Inferior_frontal_gyrus_orbital_part right +13 L_Rolandic_operculum left +14 R_Rolandic_operculum right +15 L_Supplementary_motor_area_(Frontal_lobe_Medial_Surface) left +16 R_Supplementary_motor_area_(Frontal_lobe_Medial_Surface) right +17 L_Olfactory_cortex left +18 R_Olfactory_cortex right +19 L_Superior_frontal_gyrus_medial left +20 R_Superior_frontal_gyrus_medial right +21 L_Superior_frontal_gyrus_medial_orbital left +22 R_Superior_frontal_gyrus_medial_orbital right +23 L_Gyrus_rectus left +24 R_Gyrus_rectus right +25 L_Superior_frontal_gyrus_orbital_part left +26 R_Superior_frontal_gyrus_orbital_part right +27 L_Middle_frontal_gyrus_orbital_part left +28 R_Middle_frontal_gyrus_orbital_part right +29 L_Orbitofrontal_cortex_posterior left +30 R_Orbitofrontal_cortex_posterior right +31 L_Orbitofrontal_cortex_lateral left +32 R_Orbitofrontal_cortex_lateral right +33 L_Insula left +34 R_Insula right +35 L_Anterior_cingulate_and_paracingulate_gyri left +36 R_Anterior_cingulate_and_paracingulate_gyri right +37 L_Median_cingulate_and_paracingulate_gyri left +38 R_Median_cingulate_and_paracingulate_gyri right +39 L_Posterior_cingulate_gyrus left +40 R_Posterior_cingulate_gyrus right +41 L_Hippocampus left +42 R_Hippocampus right +43 L_Parahippocampal_gyrus left +44 R_Parahippocampal_gyrus right +45 L_Amygdala left +46 R_Amygdala right +47 L_Calcarine_fissure_and_surrounding_cortex left +48 R_Calcarine_fissure_and_surrounding_cortex right +49 L_Cuneus left +50 R_Cuneus right +51 L_Lingual_gyrus left +52 R_Lingual_gyrus right +53 L_Superior_occipital_gyrus left +54 R_Superior_occipital_gyrus right +55 L_Middle_occipital_gyrus left +56 R_Middle_occipital_gyrus right +57 L_Inferior_occipital_gyrus left +58 R_Inferior_occipital_gyrus right +59 L_Fusiform_gyrus left +60 R_Fusiform_gyrus right +61 L_Postcentral_gyrus left +62 R_Postcentral_gyrus right +63 L_Superior_parietal_gyrus left +64 R_Superior_parietal_gyrus right +65 L_Inferior_parietial_but_supramarginal_and_angular_gyri left +66 R_Inferior_parietial_but_supramarginal_and_angular_gyri right +67 L_Supramarginal_gyrus left +68 R_Suparmarginal_gyrus right +69 L_Angular_gyrus left +70 R_Angular_gyrus right +71 L_Precuneus left +72 R_Precuneus right +73 L_Paracentral_lobule left +74 R_Paracentral_lobule right +75 L_Caudate_nucleus left +76 R_Caudate_nucleus right +77 L_Lenticular_nucleus_putamen left +78 R_Lenticular_nucleus_putamen right +79 L_Lenticular_nucleus_pallidum left +80 R_Lenticular_nucleus_pallidum right +81 L_Thalamus left +82 R_Thalamus right +83 L_Heschl_gyrus left +84 R_Heschl_gyrus right +85 L_Superior_temporal_gyrus left +86 R_Superior_temporal_gyrus right +87 L_Temporal_pole_superior_temporal_gyrus left +88 R_Temporal_pole_superior_temporal_gyrus right +89 L_Middle_temporal_gyrus left +90 R_Middle_temporal_gyrus right +91 L_Temporal_pole_middle_temporal_gyrus left +92 R_Temporal_pole_middle_temporal_gyrus right +93 L_Inferior_temporal_gyrus left +94 R_Inferior_temporal_gyrus right +95 L_Cerebelum_Crus1 left +96 R_Cerebelum_Crus1 right +97 L_Cerebelum_Crus2 left +98 R_Cerebelum_Crus2 right +99 L_Cerebelum_3 left +100 R_Cerebelum_3 right +101 L_Cerebelum_4_5 left +102 R_Cerebelum_4_5 right +103 L_Cerebelum_6 left +104 R_Cerebelum_6 right +105 L_Cerebelum_7b left +106 R_Cerebelum_7b right +107 L_Cerebelum_8 left +108 R_Cerebelum_8 right +109 L_Cerebelum_9 left +110 R_Cerebelum_9 right +111 L_Cerebelum_10 left +112 R_Cerebelum_10 right +113 Vermis_1_2 bilateral +114 Vermis_4 bilateral +115 Vermis_4_5 bilateral +116 Vermis_6 bilateral +117 Vermis_7 bilateral +118 Vermis_8 bilateral +119 Vermis_9 bilateral +120 Vermis_10 bilateral diff --git a/atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-1_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-1_dseg.json index c224921..8f7b11f 100644 --- a/atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "AAL", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "117", - "Average Volume Per Region": "61718.22222222222", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/11771995" - }, "rois": { "0": { "label": "null", @@ -1085,5 +1073,25 @@ "center": null, "size": null } - } + }, + "Atlasname": "AAL", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "117", + "AverageVolumePerRegion": "61718.22222222222", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/11771995" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/AAL_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/AAL_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-2_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-2_dseg.json index 24cbb65..1fed930 100644 --- a/atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "AAL", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "117", - "Average Volume Per Region": "7714.777777777777", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/11771995" - }, "rois": { "0": { "label": "null", @@ -1085,5 +1073,25 @@ "center": null, "size": null } - } + }, + "Atlasname": "AAL", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "117", + "AverageVolumePerRegion": "7714.777777777777", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/11771995" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/AAL_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/AAL_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-4_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-4_dseg.json index e6a614d..567a767 100644 --- a/atlases/label/Human/Metadata-json/AAL_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "AAL", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "117", - "Average Volume Per Region": "934.6153846153846", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/11771995" - }, "rois": { "0": { "label": "null", @@ -1085,5 +1073,25 @@ "center": null, "size": null } - } + }, + "Atlasname": "AAL", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "117", + "AverageVolumePerRegion": "934.6153846153846", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/11771995" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/AAL_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/AAL_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-AAL_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-1_dseg.json index 7acfc15..6deb81a 100644 --- a/atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "AICHA", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "384", - "Average Volume Per Region": "3004.3333333333335", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/26213217" - }, "rois": { "0": { "label": "empty", @@ -3472,5 +3460,25 @@ ], "size": 1752 } - } + }, + "Atlasname": "AICHA", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "384", + "AverageVolumePerRegion": "3004.3333333333335", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26213217" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/AICHAJoliot2015_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/AICHAJoliot2015_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-2_dseg.json index d70898a..b582286 100644 --- a/atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "AICHA", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "384", - "Average Volume Per Region": "375.5416666666667", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/26213217" - }, "rois": { "0": { "label": "empty", @@ -3472,5 +3460,25 @@ ], "size": 219 } - } + }, + "Atlasname": "AICHA", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "384", + "AverageVolumePerRegion": "375.5416666666667", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26213217" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/AICHAJoliot2015_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/AICHAJoliot2015_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-4_dseg.json index a89a12f..eb69a33 100644 --- a/atlases/label/Human/Metadata-json/AICHAJoliot2015_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "AICHA", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "384", - "Average Volume Per Region": "46.236979166666664", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/26213217" - }, "rois": { "0": { "label": "empty", @@ -3472,5 +3460,25 @@ ], "size": 22 } - } + }, + "Atlasname": "AICHA", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "384", + "AverageVolumePerRegion": "46.236979166666664", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26213217" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/AICHAJoliot2015_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/AICHAJoliot2015_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-AICHAJoliot2015_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-AICHA_dseg.tsv b/atlases/label/Human/atlas-AICHA_dseg.tsv new file mode 100644 index 0000000..7b97bc4 --- /dev/null +++ b/atlases/label/Human/atlas-AICHA_dseg.tsv @@ -0,0 +1,385 @@ +index label hemisphere +1 L_Superior_Frontal_Gyrus_1 left +2 R_Superior_Frontal_Gyrus_1 right +3 L_Superior_Frontal_Gyrus_2 left +4 R_Superior_Frontal_Gyrus_2 right +5 L_Superior_Frontal_Gyrus_3 left +6 R_Superior_Frontal_Gyrus_3 right +7 L_Superior_Frontal_Sulcus_1 left +8 R_Superior_Frontal_Sulcus_1 right +9 L_Superior_Frontal_Sulcus_2 left +10 R_Superior_Frontal_Sulcus_2 right +11 L_Superior_Frontal_Sulcus_3 left +12 R_Superior_Frontal_Sulcus_3 right +13 L_Superior_Frontal_Sulcus_4 left +14 R_Superior_Frontal_Sulcus_4 right +15 L_Superior_Frontal_Sulcus_5 left +16 R_Superior_Frontal_Sulcus_5 right +17 L_Superior_Frontal_Sulcus_6 left +18 R_Superior_Frontal_Sulcus_6 right +19 L_Middle_Frontal_Gyrus_1 left +20 R_Middle_Frontal_Gyrus_1 right +21 L_Middle_Frontal_Gyrus_2 left +22 R_Middle_Frontal_Gyrus_2 right +23 L_Middle_Frontal_Gyrus_3 left +24 R_Middle_Frontal_Gyrus_3 right +25 L_Middle_Frontal_Gyrus_4 left +26 R_Middle_Frontal_Gyrus_4 right +27 L_Middle_Frontal_Gyrus_5 left +28 R_Middle_Frontal_Gyrus_5 right +29 L_Inferior_Frontal_Sulcus_1 left +30 R_Inferior_Frontal_Sulcus_1 right +31 L_Inferior_Frontal_Sulcus_2 left +32 R_Inferior_Frontal_Sulcus_2 right +33 L_Inferior_Frontal_Triangular_Gyrus left +34 R_Inferior_Frontal_Triangular_Gyrus right +35 L_Superior_Frontal_Orbital_Gyrus left +36 R_Superior_Frontal_Orbital_Gyrus right +37 L_Middle_Frontal_Orbital_Gyrus_1 left +38 R_Middle_Frontal_Orbital_Gyrus_1 right +39 L_Middle_Frontal_Orbital_Gyrus_2 left +40 R_Middle_Frontal_Orbital_Gyrus_2 right +41 L_Inferior_Frontal_Orbital_Gyrus_1 left +42 R_Inferior_Frontal_Orbital_Gyrus_1 right +43 L_Inferior_Frontal_Orbital_Gyrus_2 left +44 R_Inferior_Frontal_Orbital_Gyrus_2 right +45 L_Orbital_Sulcus_1 left +46 R_Orbital_Sulcus_1 right +47 L_Orbital_Sulcus_2 left +48 R_Orbital_Sulcus_2 right +49 L_Olfactory_Sulcus_1 left +50 R_Olfactory_Sulcus_1 right +51 L_Precentral_Sulcus_1 left +52 R_Precentral_Sulcus_1 right +53 L_Precentral_Sulcus_2 left +54 R_Precentral_Sulcus_2 right +55 L_Precentral_Sulcus_3 left +56 R_Precentral_Sulcus_3 right +57 L_Precentral_Sulcus_4 left +58 R_Precentral_Sulcus_4 right +59 L_Precentral_Sulcus_5 left +60 R_Precentral_Sulcus_5 right +61 L_Precentral_Sulcus_6 left +62 R_Precentral_Sulcus_6 right +63 L_Rolando_Sulcus_1 left +64 R_Rolando_Sulcus_1 right +65 L_Rolando_Sulcus_2 left +66 R_Rolando_Sulcus_2 right +67 L_Rolando_Sulcus_3 left +68 R_Rolando_Sulcus_3 right +69 L_Rolando_Sulcus_4 left +70 R_Rolando_Sulcus_4 right +71 L_Postcentral_Sulcus_1 left +72 R_Postcentral_Sulcus_1 right +73 L_Postcentral_Sulcus_2 left +74 R_Postcentral_Sulcus_2 right +75 L_Postcentral_Sulcus_3 left +76 R_Postcentral_Sulcus_3 right +77 L_Superior_Parietal_Gyrus_1 left +78 R_Superior_Parietal_Gyrus_1 right +79 L_Superior_Parietal_Gyrus_2 left +80 R_Superior_Parietal_Gyrus_2 right +81 L_Superior_Parietal_Gyrus_3 left +82 R_Superior_Parietal_Gyrus_3 right +83 L_Superior_Parietal_Gyrus_4 left +84 R_Superior_Parietal_Gyrus_4 right +85 L_Superior_Parietal_Gyrus_5 left +86 R_Superior_Parietal_Gyrus_5 right +87 L_SupraMarginal_Gyrus_1 left +88 R_SupraMarginal_Gyrus_1 right +89 L_SupraMarginal_Gyrus_2 left +90 R_SupraMarginal_Gyrus_2 right +91 L_SupraMarginal_Gyrus_3 left +92 R_SupraMarginal_Gyrus_3 right +93 L_SupraMarginal_Gyrus_4 left +94 R_SupraMarginal_Gyrus_4 right +95 L_SupraMarginal_Gyrus_5 left +96 R_SupraMarginal_Gyrus_5 right +97 L_SupraMarginal_Gyrus_6 left +98 R_SupraMarginal_Gyrus_6 right +99 L_SupraMarginal_Gyrus_7 left +100 R_SupraMarginal_Gyrus_7 right +101 L_Angular_Gyrus_1 left +102 R_Angular_Gyrus_1 right +103 L_Angular_Gyrus_2 left +104 R_Angular_Gyrus_2 right +105 L_Angular_Gyrus_3 left +106 R_Angular_Gyrus_3 right +107 L_Inferior_Parietal_Gyrus_1 left +108 R_Inferior_Parietal_Gyrus_1 right +109 L_Intraparietal_Sulcus_1 left +110 R_Intraparietal_Sulcus_1 right +111 L_Intraparietal_Sulcus_2 left +112 R_Intraparietal_Sulcus_2 right +113 L_Intraparietal_Sulcus_3 left +114 R_Intraparietal_Sulcus_3 right +115 L_Intraoccipital_Sulcus_1 left +116 R_Intraoccipital_Sulcus_1 right +117 L_Occipital_Pole_Gyrus_1 left +118 R_Occipital_Pole_Gyrus_1 right +119 L_Lateral_Occipital_Gyrus_1 left +120 R_Lateral_Occipital_Gyrus_1 right +121 L_Lateral_Occipital_Gyrus_2 left +122 R_Lateral_Occipital_Gyrus_2 right +123 L_Lateral_Occipital_Gyrus_3 left +124 R_Lateral_Occipital_Gyrus_3 right +125 L_Lateral_Occipital_Gyrus_4 left +126 R_Lateral_Occipital_Gyrus_4 right +127 L_Lateral_Occipital_Gyrus_5 left +128 R_Lateral_Occipital_Gyrus_5 right +129 L_Superior_Occipital_Gyrus_1 left +130 R_Superior_Occipital_Gyrus_1 right +131 L_Superior_Occipital_Gyrus_2 left +132 R_Superior_Occipital_Gyrus_2 right +133 L_Middle_Occipital_Gyrus_1 left +134 R_Middle_Occipital_Gyrus_1 right +135 L_Middle_Occipital_Gyrus_2 left +136 R_Middle_Occipital_Gyrus_2 right +137 L_Middle_Occipital_Gyrus_3 left +138 R_Middle_Occipital_Gyrus_3 right +139 L_Middle_Occipital_Gyrus_4 left +140 R_Middle_Occipital_Gyrus_4 right +141 L_Inferior_Occipital_Gyrus_1 left +142 R_Inferior_Occipital_Gyrus_1 right +143 L_Inferior_Occipital_Gyrus_2 left +144 R_Inferior_Occipital_Gyrus_2 right +145 L_Anterior_Insula_Gyrus_1 left +146 R_Anterior_Insula_Gyrus_1 right +147 L_Anterior_Insula_Gyrus_2 left +148 R_Anterior_Insula_Gyrus_2 right +149 L_Anterior_Insula_Gyrus_3 left +150 R_Anterior_Insula_Gyrus_3 right +151 L_Anterior_Insula_Gyrus_4 left +152 R_Anterior_Insula_Gyrus_4 right +153 L_Anterior_Insula_Gyrus_5 left +154 R_Anterior_Insula_Gyrus_5 right +155 L_Insula-posterior_Gyrus_1 left +156 R_Insula-posterior_Gyrus_1 right +157 L_Rolandic_Operculum_Gyrus_1 left +158 R_Rolandic_Operculum_Gyrus_1 right +159 L_Rolandic_Operculum_Gyrus_2 left +160 R_Rolandic_Operculum_Gyrus_2 right +161 L_Superior_Temporal_Gyrus_1 left +162 R_Superior_Temporal_Gyrus_1 right +163 L_Superior_Temporal_Gyrus_2 left +164 R_Superior_Temporal_Gyrus_2 right +165 L_Superior_Temporal_Gyrus_3 left +166 R_Superior_Temporal_Gyrus_3 right +167 L_Superior_Temporal_Gyrus_4 left +168 R_Superior_Temporal_Gyrus_4 right +169 L_Supeiror_Temporal_Sulcus_1 left +170 R_Superior_Temporal_Sulcus_1 right +171 L_Supeiror_Temporal_Sulcus_2 left +172 R_Superior_Temporal_Sulcus_2 right +173 L_Supeiror_Temporal_Sulcus_3 left +174 R_Superior_Temporal_Sulcus_3 right +175 L_Supeiror_Temporal_Sulcus_4 left +176 R_Superior_Temporal_Sulcus_4 right +177 L_Supeiror_Temporal_Sulcus_5 left +178 R_Superior_Temporal_Sulcus_5 right +179 L_Middle_Temporal_Gyrus_1 left +180 R_Middle_Temporal_Gyrus_1 right +181 L_Middle_Temporal_Gyrus_2 left +182 R_Middle_Temporal_Gyrus_2 right +183 L_Middle_Temporal_Gyrus_3 left +184 R_Middle_Temporal_Gyrus_3 right +185 L_Middle_Temporal_Gyrus_4 left +186 R_Middle_Temporal_Gyrus_4 right +187 L_Inferior_Temporal_Gyrus_1 left +188 R_Inferior_Temporal_Gyrus_1 right +189 L_Inferior_Temporal_Gyrus_2 left +190 R_Inferior_Temporal_Gyrus_2 right +191 L_Inferior_Temporal_Gyrus_3 left +192 R_Inferior_Temporal_Gyrus_3 right +193 L_Inferior_Temporal_Gyrus_4 left +194 R_Inferior_Temporal_Gyrus_4 right +195 L_Inferior_Temporal_Gyrus_5 left +196 R_Inferior_Temporal_Gyrus_5 right +197 L_Superior_Temporal_Pole_Gyrus_1 left +198 R_Superior_Temporal_Pole_Gyrus_1 right +199 L_Superior_Temporal_Pole_Gyrus_2 left +200 R_Superior_Temporal_Pole_Gyrus_2 right +201 L_Middle_Temporal_Pole_Gyrus_1 left +202 R_Middle_Temporal_Pole_Gyrus_1 right +203 L_Middle_Temporal_Pole_Gyrus_2 left +204 R_Middle_Temporal_Pole_Gyrus_2 right +205 L_Middle_Temporal_Pole_Gyrus_3 left +206 R_Middle_Temporal_Pole_Gyrus_3 right +207 L_Superior_Medial_Frontal_Gyrus_1 left +208 R_Superior_Medial_Frontal_Gyrus_1 right +209 L_Superior_Medial_Frontal_Gyrus_2 left +210 R_Superior_Medial_Frontal_Gyrus_2 right +211 L_Superior_Medial_Frontal_Gyrus_3 left +212 R_Superior_Medial_Frontal_Gyrus_3 right +213 L_Anterior_Rostral_Sulcus_1 left +214 R_Anterior_Rostral_Sulcus_1 right +215 L_Medial_Frontal_Orbital_Gyrus_1 left +216 R_Medial_Frontal_Orbital_Gyrus_1 right +217 L_Medial_Frontal_Orbital_Gyrus_2 left +218 R_Medial_Frontal_Orbital_Gyrus_2 right +219 L_Subcallosal_Gyrus_1 left +220 R_Subcallosal_Gyrus_1 right +221 L_Supplementary_Motor_Area_Gyrus_1 left +222 R_Supplementary_Motor_Area_Gyrus_1 right +223 L_Supplementary_Motor_Area_Gyrus_2 left +224 R_Supplementary_Motor_Area_Gyrus_2 right +225 L_Supplementary_Motor_Area_Gyrus_3 left +226 R_Supplementary_Motor_Area_Gyrus_3 right +227 L_Cingulate_Sulcus_1 left +228 R_Cingulate_Sulcus_1 right +229 L_Cingulate_Sulcus_2 left +230 R_Cingulate_Sulcus_2 right +231 L_Cingulate_Sulcus_3 left +232 R_Cingulate_Sulcus_3 right +233 L_Cingulate_Sulcus_4 left +234 R_Cingulate_Sulcus_4 right +235 L_Cingulate_Sulcus_5 left +236 R_Cingulate_Sulcus_5 right +237 L_Cingulate_Sulcus_6 left +238 R_Cingulate_Sulcus_6 right +239 L_Cingulate_Sulcus_7 left +240 R_Cingulate_Sulcus_7 right +241 L_Anterior_Cingulum_Gyrus_1 left +242 R_Anterior_Cingulum_Gyrus_1 right +243 L_Anterior_Cingulum_Gyrus_2 left +244 R_Anterior_Cingulum_Gyrus_2 right +245 L_Middle_Cingulum_Gyrus_1 left +246 R_Middle_Cingulum_Gyrus_1 right +247 L_Middle_Cingulum_Gyrus_2 left +248 R_Middle_Cingulum_Gyrus_2 right +249 L_Middle_Cingulum_Gyrus_3 left +250 R_Middle_Cingulum_Gyrus_3 right +251 L_Posterior_Cingulum_Gyrus_1 left +252 R_Posterior_Cingulum_Gyrus_1 right +253 L_Posterior_Cingulum_Gyrus_2 left +254 R_Posterior_Cingulum_Gyrus_2 right +255 L_Posterior_Cingulum_Gyrus_3 left +256 R_Posterior_Cingulum_Gyrus_3 right +257 L_Paracentral_Lobule_Gyrus_1 left +258 R_Paracentral_Lobule_Gyrus_1 right +259 L_Paracentral_Lobule_Gyrus_2 left +260 R_Paracentral_Lobule_Gyrus_2 right +261 L_Paracentral_Lobule_Gyrus_3 left +262 R_Paracentral_Lobule_Gyrus_3 right +263 L_Paracentral_Lobule_Gyrus_4 left +264 R_Paracentral_Lobule_Gyrus_4 right +265 L_Precuneus_Gyrus_1 left +266 R_Precuneus_Gyrus_1 right +267 L_Precuneus_Gyrus_2 left +268 R_Precuneus_Gyrus_2 right +269 L_Precuneus_Gyrus_3 left +270 R_Precuneus_Gyrus_3 right +271 L_Precuneus_Gyrus_4 left +272 R_Precuneus_Gyrus_4 right +273 L_Precuneus_Gyrus_5 left +274 R_Precuneus_Gyrus_5 right +275 L_Precuneus_Gyrus_6 left +276 R_Precuneus_Gyrus_6 right +277 L_Precuneus_Gyrus_7 left +278 R_Precuneus_Gyrus_7 right +279 L_Precuneus_Gyrus_8 left +280 R_Precuneus_Gyrus_8 right +281 L_Precuneus_Gyrus_9 left +282 R_Precuneus_Gyrus_9 right +283 L_Parieto-Occipital_Sulcus_1 left +284 R_Parieto-Occipital_Sulcus_1 right +285 L_Parieto-Occipital_Sulcus_2 left +286 R_Parieto-Occipital_Sulcus_2 right +287 L_Parieto-Occipital_Sulcus_3 left +288 R_Parieto-Occipital_Sulcus_3 right +289 L_Parieto-Occipital_Sulcus_4 left +290 R_Parieto-Occipital_Sulcus_4 right +291 L_Parieto-Occipital_Sulcus_5 left +292 R_Parieto-Occipital_Sulcus_5 right +293 L_Parieto-Occipital_Sulcus_6 left +294 R_Parieto-Occipital_Sulcus_6 right +295 L_Cuneus_Gyrus_1 left +296 R_Cuneus_Gyrus_1 right +297 L_Cuneus_Gyrus_2 left +298 R_Cuneus_Gyrus_2 right +299 L_Calcarine_Gyrus_1 left +300 R_Calcarine_Gyrus_1 right +301 L_Calcarine_Gyrus_2 left +302 R_Calcarine_Gyrus_2 right +303 L_Calcarine_Gyrus_3 left +304 R_Calcarine_Gyrus_3 right +305 L_Lingual_Gyrus_1 left +306 R_Lingual_Gyrus_1 right +307 L_Lingual_Gyrus_2 left +308 R_Lingual_Gyrus_2 right +309 L_Lingual_Gyrus_3 left +310 R_Lingual_Gyrus_3 right +311 L_Lingual_Gyrus_4 left +312 R_Lingual_Gyrus_4 right +313 L_Lingual_Gyrus_5 left +314 R_Lingual_Gyrus_5 right +315 L_Lingual_Gyrus_6 left +316 R_Lingual_Gyrus_6 right +317 L_Hippocampus_Gyrus_1 left +318 R_Hippocampus_Gyrus_1 right +319 L_Hippocampus_Gyrus_2 left +320 R_Hippocampus_Gyrus_2 right +321 L_ParaHippocampal_Gyrus_1 left +322 R_ParaHippocampal_Gyrus_1 right +323 L_ParaHippocampal_Gyrus_2 left +324 R_ParaHippocampal_Gyrus_2 right +325 L_ParaHippocampal_Gyrus_3 left +326 R_ParaHippocampal_Gyrus_3 right +327 L_ParaHippocampal_Gyrus_4 left +328 R_ParaHippocampal_Gyrus_4 right +329 L_ParaHippocampal_Gyrus_5 left +330 R_ParaHippocampal_Gyrus_5 right +331 L_Fusiform_Gyrus_1 left +332 R_Fusiform_Gyrus_1 right +333 L_Fusiform_Gyrus_2 left +334 R_Fusiform_Gyrus_2 right +335 L_Fusiform_Gyrus_3 left +336 R_Fusiform_Gyrus_3 right +337 L_Fusiform_Gyrus_4 left +338 R_Fusiform_Gyrus_4 right +339 L_Fusiform_Gyrus_5 left +340 R_Fusiform_Gyrus_5 right +341 L_Fusiform_Gyrus_6 left +342 R_Fusiform_Gyrus_6 right +343 L_Fusiform_Gyrus_7 left +344 R_Fusiform_Gyrus_7 right +345 L_Amygdala_Nucleus_1 left +346 R_Amygdala_Nucleus_1 right +347 L_Caudate_Nucleus_1 left +348 R_Caudate_Nucleus_1 right +349 L_Caudate_Nucleus_2 left +350 R_Caudate_Nucleus_2 right +351 L_Caudate_Nucleus_3 left +352 R_Caudate_Nucleus_3 right +353 L_Caudate_Nucleus_4 left +354 R_Caudate_Nucleus_4 right +355 L_Caudate_Nucleus_5 left +356 R_Caudate_Nucleus_5 right +357 L_Caudate_Nucleus_6 left +358 R_Caudate_Nucleus_6 right +359 L_Caudate_Nucleus_7 left +360 R_Caudate_Nucleus_7 right +361 L_Pallidum_Nucleus_1 left +362 R_Pallidum_Nucleus_1 right +363 L_Putamen_Nucleus_2 left +364 R_Putamen_Nucleus_2 right +365 L_Putamen_Nucleus_3 left +366 R_Putamen_Nucleus_3 right +367 L_Thalamus_Nucleus_1 left +368 R_Thalamus_Nucleus_1 right +369 L_Thalamus_Nucleus_2 left +370 R_Thalamus_Nucleus_2 right +371 L_Thalamus_Nucleus_3 left +372 R_Thalamus_Nucleus_3 right +373 L_Thalamus_Nucleus_4 left +374 R_Thalamus_Nucleus_4 right +375 L_Thalamus_Nucleus_5 left +376 R_Thalamus_Nucleus_5 right +377 L_Thalamus_Nucleus_6 left +378 R_Thalamus_Nucleus_6 right +379 L_Thalamus_Nucleus_7 left +380 R_Thalamus_Nucleus_7 right +381 L_Thalamus_Nucleus_8 left +382 R_Thalamus_Nucleus_8 right +383 L_Thalamus_Nucleus_9 left +384 R_Thalamus_Nucleus_9 right diff --git a/atlases/label/Human/atlas-Brodmann_dseg.tsv b/atlases/label/Human/atlas-Brodmann_dseg.tsv new file mode 100644 index 0000000..cc6b510 --- /dev/null +++ b/atlases/label/Human/atlas-Brodmann_dseg.tsv @@ -0,0 +1,43 @@ +index label hemisphere +0 empty bilateral +1 Brodmann_area_1 bilateral +2 Brodmann_area_2 bilateral +3 Brodmann_area_3 bilateral +4 Brodmann_area_4 bilateral +5 Brodmann_area_5 bilateral +6 Brodmann_area_6 bilateral +7 Brodmann_area_7 bilateral +8 Brodmann_area_8 bilateral +9 Brodmann_area_9 bilateral +10 Brodmann_area_10 bilateral +11 Brodmann_area_11_12 bilateral +12 Brodmann_area_17 bilateral +13 Brodmann_area_18 bilateral +14 Brodmann_area_19 bilateral +15 Brodmann_area_20 bilateral +16 Brodmann_area_21 bilateral +17 Brodmann_area_22 bilateral +18 Brodmann_area_23_31 bilateral +19 Brodmann_area_24 bilateral +20 Brodmann_area_25 bilateral +21 Brodmann_area_26 bilateral +22 Brodmann_area_27 bilateral +23 Brodmann_area_28 bilateral +24 Brodmann_area_29 bilateral +25 Brodmann_area_30 bilateral +26 Brodmann_area_32_33 bilateral +27 Brodmann_area_34 bilateral +28 Brodmann_area_35 bilateral +29 Brodmann_area_36 bilateral +30 Brodmann_area_37 bilateral +31 Brodmann_area_38 bilateral +32 Brodmann_area_39 bilateral +33 Brodmann_area_40 bilateral +34 Brodmann_area_41 bilateral +35 Brodmann_area_42 bilateral +36 Brodmann_area_43 bilateral +37 Brodmann_area_44 bilateral +38 Brodmann_area_45 bilateral +39 Brodmann_area_46 bilateral +40 Brodmann_area_47 bilateral +41 Brodmann_area_16 bilateral diff --git a/atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-1_dseg.json similarity index 94% rename from atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-1_dseg.json index e726bd6..b7676ec 100644 --- a/atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Brodmann", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "42", - "Average Volume Per Region": "171929.33333333334", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/B05_on_Conte69" - }, "rois": { "0": { "label": "empty", @@ -390,5 +378,25 @@ ], "size": 158164 } - } + }, + "Atlasname": "Brodmann", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "42", + "AverageVolumePerRegion": "171929.33333333334", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/B05_on_Conte69" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Brodmann_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Brodmann_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-2_dseg.json similarity index 94% rename from atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-2_dseg.json index 405947f..bd37427 100644 --- a/atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Brodmann", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "42", - "Average Volume Per Region": "21491.166666666668", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/B05_on_Conte69" - }, "rois": { "0": { "label": "empty", @@ -390,5 +378,25 @@ ], "size": 19680 } - } + }, + "Atlasname": "Brodmann", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "42", + "AverageVolumePerRegion": "21491.166666666668", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/B05_on_Conte69" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Brodmann_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Brodmann_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-4_dseg.json similarity index 94% rename from atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-4_dseg.json index a084f3f..ebaa0de 100644 --- a/atlases/label/Human/Metadata-json/Brodmann_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Brodmann", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "42", - "Average Volume Per Region": "2603.5714285714284", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/B05_on_Conte69" - }, "rois": { "0": { "label": "empty", @@ -390,5 +378,25 @@ ], "size": 2449 } - } + }, + "Atlasname": "Brodmann", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "42", + "AverageVolumePerRegion": "2603.5714285714284", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/B05_on_Conte69" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Brodmann_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Brodmann_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Brodmann_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-CAPRSC_dseg.tsv b/atlases/label/Human/atlas-CAPRSC_dseg.tsv new file mode 100644 index 0000000..14e6287 --- /dev/null +++ b/atlases/label/Human/atlas-CAPRSC_dseg.tsv @@ -0,0 +1,334 @@ +index label hemisphere +1 L_Default_network_1 left +2 L_Somatomotor_hand_2 left +3 L_Somatomotor_mouth_3 left +4 L_Default_network_4 left +5 L_Visual_network_5 left +6 L_Default_network_6 left +7 L_FrontoParietal_network_7 left +8 L_Visual_network_8 left +9 L_FrontoParietal_network_9 left +10 L_Auditory_network_10 left +11 L_Unknown_11 left +12 L_CinguloParietal_12 left +13 L_RetrosplenialTemporal_13 left +14 L_RetrosplenialTemporal_14 left +15 L_Visual_network_15 left +16 L_Visual_network_16 left +17 L_Visual_network_17 left +18 L_Unknown_18 left +19 L_Unknown_19 left +20 L_Visual_network_20 left +21 L_Cingulo-opercular_network_21 left +22 L_Cingulo-opercular_network_22 left +23 L_Ventral_attention_23 left +24 L_FrontoParietal_network_24 left +25 L_Default_network_25 left +26 L_Default_network_26 left +27 L_Cingulo-opercular_network_27 left +28 L_Cingulo-opercular_network_28 left +29 L_Salience_29 left +30 L_Somatomotor_hand_30 left +31 L_Somatomotor_hand_31 left +32 L_Somatomotor_hand_32 left +33 L_Somatomotor_hand_33 left +34 L_Cingulo-opercular_network_34 left +35 L_Somatomotor_hand_35 left +36 L_Somatomotor_hand_36 left +37 L_Somatomotor_hand_37 left +38 L_Somatomotor_hand_38 left +39 L_Somatomotor_mouth_39 left +40 L_Cingulo-opercular_network_40 left +41 L_Dorsal_attention_41 left +42 L_Dorsal_attention_42 left +43 L_Dorsal_attention_43 left +44 L_Default_network_44 left +45 L_Somatomotor_hand_45 left +46 L_Somatomotor_hand_46 left +47 L_Somatomotor_hand_47 left +48 L_Somatomotor_hand_48 left +49 L_Dorsal_attention_49 left +50 L_Somatomotor_hand_50 left +51 L_Dorsal_attention_51 left +52 L_Dorsal_attention_52 left +53 L_Somatomotor_mouth_53 left +54 L_Somatomotor_hand_54 left +55 L_Dorsal_attention_55 left +56 L_Somatomotor_hand_56 left +57 L_Somatomotor_hand_57 left +58 L_Somatomotor_hand_58 left +59 L_Somatomotor_mouth_59 left +60 L_Ventral_attention_60 left +61 L_Ventral_attention_61 left +62 L_Ventral_attention_62 left +63 L_Cingulo-opercular_network_63 left +64 L_Auditory_network_64 left +65 L_Auditory_network_65 left +66 L_Auditory_network_66 left +67 L_Auditory_network_67 left +68 L_Auditory_network_68 left +69 L_Auditory_network_69 left +70 L_Auditory_network_70 left +71 L_Cingulo-opercular_network_71 left +72 L_Cingulo-opercular_network_72 left +73 L_Unknown_73 left +74 L_Dorsal_attention_74 left +75 L_Ventral_attention_75 left +76 L_Cingulo-opercular_network_76 left +77 L_Auditory_network_77 left +78 L_FrontoParietal_network_78 left +79 L_Ventral_attention_79 left +80 L_Ventral_attention_80 left +81 L_Cingulo-opercular_network_81 left +82 L_Cingulo-opercular_network_82 left +83 L_Salience_83 left +84 L_Cingulo-opercular_network_84 left +85 L_Ventral_attention_85 left +86 L_Ventral_attention_86 left +87 L_Dorsal_attention_87 left +88 L_Dorsal_attention_88 left +89 L_CinguloParietal_89 left +90 L_Visual_network_90 left +91 L_Dorsal_attention_91 left +92 L_Dorsal_attention_92 left +93 L_CinguloParietal_93 left +94 L_Default_network_94 left +95 L_Dorsal_attention_95 left +96 L_FrontoParietal_network_96 left +97 L_Visual_network_97 left +98 L_Visual_network_98 left +99 L_Visual_network_99 left +100 L_Dorsal_attention_100 left +101 L_Cingulo-opercular_network_101 left +102 L_Auditory_network_102 left +103 L_Cingulo-opercular_network_103 left +104 L_Auditory_network_104 left +105 L_Cingulo-opercular_network_105 left +106 L_Dorsal_attention_106 left +107 L_Dorsal_attention_107 left +108 L_FrontoParietal_network_108 left +109 L_FrontoParietal_network_109 left +110 L_Dorsal_attention_110 left +111 L_Cingulo-opercular_network_111 left +112 L_Cingulo-opercular_network_112 left +113 L_Dorsal_attention_113 left +114 L_Default_network_114 left +115 L_Unknown_115 left +116 L_Default_network_116 left +117 L_Default_network_117 left +118 L_Unknown_118 left +119 L_Unknown_119 left +120 L_Unknown_120 left +121 L_Unknown_121 left +122 L_Unknown_122 left +123 L_Unknown_123 left +124 L_Unknown_124 left +125 L_Unknown_125 left +126 L_Default_network_126 left +127 L_Default_network_127 left +128 L_Unknown_128 left +129 L_Unknown_129 left +130 L_RetrosplenialTemporal_130 left +131 L_Visual_network_131 left +132 L_Visual_network_132 left +133 L_Unknown_133 left +134 L_Unknown_134 left +135 L_Unknown_135 left +136 L_Visual_network_136 left +137 L_Visual_network_137 left +138 L_Visual_network_138 left +139 L_Visual_network_139 left +140 L_Visual_network_140 left +141 L_Visual_network_141 left +142 L_Unknown_142 left +143 L_RetrosplenialTemporal_14 left +144 L_Unknown_144 left +145 L_Default_network_145 left +146 L_Default_network_146 left +147 L_Cingulo-opercular_network_147 left +148 L_FrontoParietal_network_148 left +149 L_FrontoParietal_network_149 left +150 L_Default_network_150 left +151 L_Default_network_151 left +152 L_Default_network_152 left +153 L_Cingulo-opercular_network_153 left +154 L_Default_network_154 left +155 L_Dorsal_attention_155 left +156 L_Default_network_156 left +157 L_Default_network_157 left +158 L_Ventral_attention_158 left +159 L_Unknown_159 left +160 L_Auditory_network_160 left +161 L_Ventral_attention_161 left +162 R_Default_network_162 right +163 R_Somatomotor_hand_163 right +164 R_Somatomotor_mouth_164 right +165 R_Default_network_165 right +166 R_Visual_network_166 right +167 R_FrontoParietal_network_167 right +168 R_FrontoParietal_network_168 right +169 R_Visual_network_169 right +170 R_FrontoParietal_network_170 right +171 R_Auditory_network_171 right +172 R_Unknown_172 right +173 R_CinguloParietal_173 right +174 R_RetrosplenialTemporal_174 right +175 R_Visual_network_175 right +176 R_Visual_network_176 right +177 R_Visual_network_177 right +178 R_Unknown_178 right +179 R_Unknown_179 right +180 R_Cingulo-opercular_network_180 right +181 R_Cingulo-opercular_network_181 right +182 R_FrontoParietal_network_182 right +183 R_Salience_183 right +184 R_Default_network_184 right +185 R_Cingulo-opercular_network_185 right +186 R_Default_network_186 right +187 R_Cingulo-opercular_network_187 right +188 R_Cingulo-opercular_network_188 right +189 R_Dorsal_attention_189 right +190 R_Somatomotor_hand_190 right +191 R_Somatomotor_hand_191 right +192 R_Cingulo-opercular_network_192 right +193 R_Somatomotor_hand_193 right +194 R_Somatomotor_hand_194 right +195 R_Somatomotor_hand_195 right +196 R_Cingulo-opercular_network_196 right +197 R_Somatomotor_mouth_197 right +198 R_Cingulo-opercular_network_198 right +199 R_Dorsal_attention_199 right +200 R_Default_network_200 right +201 R_Somatomotor_hand_201 right +202 R_Somatomotor_hand_202 right +203 R_Dorsal_attention_203 right +204 R_Somatomotor_hand_204 right +205 R_Somatomotor_hand_205 right +206 R_Somatomotor_hand_206 right +207 R_Somatomotor_hand_207 right +208 R_Dorsal_attention_208 right +209 R_Somatomotor_hand_209 right +210 R_Somatomotor_hand_210 right +211 R_Dorsal_attention_211 right +212 R_Somatomotor_mouth_212 right +213 R_Somatomotor_hand_213 right +214 R_Somatomotor_hand_214 right +215 R_Somatomotor_hand_215 right +216 R_Somatomotor_hand_216 right +217 R_Somatomotor_hand_217 right +218 R_Somatomotor_mouth_218 right +219 R_Cingulo-opercular_network_219 right +220 R_Default_network_220 right +221 R_Ventral_attention_221 right +222 R_Ventral_attention_222 right +223 R_Cingulo-opercular_network_223 right +224 R_Auditory_network_224 right +225 R_Default_network_225 right +226 R_Ventral_attention_226 right +227 R_Auditory_network_227 right +228 R_Ventral_attention_228 right +229 R_Ventral_attention_229 right +230 R_Auditory_network_230 right +231 R_Ventral_attention_231 right +232 R_Auditory_network_232 right +233 R_Auditory_network_233 right +234 R_Cingulo-opercular_network_234 right +235 R_Cingulo-opercular_network_235 right +236 R_Dorsal_attention_236 right +237 R_Ventral_attention_237 right +238 R_Cingulo-opercular_network_238 right +239 R_Auditory_network_239 right +240 R_FrontoParietal_network_240 right +241 R_Ventral_attention_241 right +242 R_Ventral_attention_242 right +243 R_Ventral_attention_243 right +244 R_Auditory_network_244 right +245 R_Cingulo-opercular_network_245 right +246 R_Cingulo-opercular_network_246 right +247 R_Salience_247 right +248 R_Cingulo-opercular_network_248 right +249 R_Cingulo-opercular_network_249 right +250 R_Dorsal_attention_250 right +251 R_Visual_network_251 right +252 R_Dorsal_attention_252 right +253 R_Dorsal_attention_253 right +254 R_CinguloParietal_254 right +255 R_Visual_network_255 right +256 R_Visual_network_256 right +257 R_Default_network_257 right +258 R_Visual_network_258 right +259 R_Default_network_259 right +260 R_FrontoParietal_network_260 right +261 R_FrontoParietal_network_261 right +262 R_Dorsal_attention_262 right +263 R_Visual_network_263 right +264 R_Visual_network_264 right +265 R_Visual_network_265 right +266 R_Dorsal_attention_266 right +267 R_Visual_network_267 right +268 R_Auditory_network_268 right +269 R_Auditory_network_269 right +270 R_Somatomotor_hand_270 right +271 R_Dorsal_attention_271 right +272 R_FrontoParietal_network_272 right +273 R_FrontoParietal_network_273 right +274 R_Cingulo-opercular_network_274 right +275 R_Dorsal_attention_275 right +276 R_FrontoParietal_network_276 right +277 R_FrontoParietal_network_277 right +278 R_Default_network_278 right +279 R_Default_network_279 right +280 R_Unknown_280 right +281 R_Unknown_281 right +282 R_Unknown_282 right +283 R_Unknown_283 right +284 R_Unknown_284 right +285 R_Unknown_285 right +286 R_Unknown_286 right +287 R_Unknown_287 right +288 R_Unknown_288 right +289 R_Unknown_289 right +290 R_Default_network_290 right +291 R_Unknown_291 right +292 R_Unknown_292 right +293 R_Visual_network_293 right +294 R_RetrosplenialTemporal_294 right +295 R_RetrosplenialTemporal_295 right +296 R_Unknown_296 right +297 R_Unknown_297 right +298 R_Visual_network_298 right +299 R_Visual_network_299 right +300 R_Unknown_300 right +301 R_Unknown_301 right +302 R_Unknown_302 right +303 R_Unknown_303 right +304 R_Unknown_304 right +305 R_Unknown_305 right +306 R_Unknown_306 right +307 R_Visual_network_307 right +308 R_Visual_network_308 right +309 R_Visual_network_309 right +310 R_Visual_network_310 right +311 R_Visual_network_311 right +312 R_Unknown_312 right +313 R_RetrosplenialTemporal_313 right +314 R_Unknown_314 right +315 R_Default_network_315 right +316 R_Default_network_316 right +317 R_Cingulo-opercular_network_317 right +318 R_Cingulo-opercular_network_318 right +319 R_FrontoParietal_network_319 right +320 R_FrontoParietal_network_320 right +321 R_Default_network_321 right +322 R_Default_network_322 right +323 R_Default_network_323 right +324 R_Default_network_324 right +325 R_Default_network_325 right +326 R_Default_network_326 right +327 R_FrontoParietal_network_327 right +328 R_FrontoParietal_network_328 right +329 R_Auditory_network_329 right +330 R_Auditory_network_330 right +331 R_Default_network_331 right +332 R_Ventral_attention_332 right +333 R_Ventral_attention_333 right diff --git a/atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-1_dseg.json index 252c731..9ad8854 100644 --- a/atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "CAPRSC", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "333", - "Average Volume Per Region": "1389.0900900900901", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/25316338" - }, "rois": { "0": { "label": "empty", @@ -3013,5 +3001,25 @@ ], "size": 372 } - } + }, + "Atlasname": "CAPRSC", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "333", + "AverageVolumePerRegion": "1389.0900900900901", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25316338" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/CAPRSC_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/CAPRSC_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-2_dseg.json index 8b7a134..ad15998 100644 --- a/atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "CAPRSC", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "333", - "Average Volume Per Region": "173.92792792792793", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/25316338" - }, "rois": { "0": { "label": "empty", @@ -3013,5 +3001,25 @@ ], "size": 48 } - } + }, + "Atlasname": "CAPRSC", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "333", + "AverageVolumePerRegion": "173.92792792792793", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25316338" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/CAPRSC_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/CAPRSC_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-4_dseg.json index 6e755a1..dcf0687 100644 --- a/atlases/label/Human/Metadata-json/CAPRSC_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "CAPRSC", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "333", - "Average Volume Per Region": "21.594594594594593", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/25316338" - }, "rois": { "0": { "label": "empty", @@ -3013,5 +3001,25 @@ ], "size": 6 } - } + }, + "Atlasname": "CAPRSC", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "333", + "AverageVolumePerRegion": "21.594594594594593", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25316338" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/CAPRSC_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/CAPRSC_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-CAPRSC_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-1_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-1_dseg.json index d73f7be..3089261 100644 --- a/atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "CPAC200", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "201", - "Average Volume Per Region": "35925.532338308454", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://github.com/FCP-INDI/C-PAC" - }, "rois": { "0": { "label": null, @@ -1821,5 +1809,25 @@ ], "size": 5697 } - } + }, + "Atlasname": "CPAC200", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "201", + "AverageVolumePerRegion": "35925.532338308454", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://github.com/FCP-INDI/C-PAC" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/CPAC200_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/CPAC200_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-2_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-2_dseg.json index 076c2b9..33d4603 100644 --- a/atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "CPAC200", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "201", - "Average Volume Per Region": "4490.691542288557", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://github.com/FCP-INDI/C-PAC" - }, "rois": { "0": { "label": null, @@ -1821,5 +1809,25 @@ ], "size": 730 } - } + }, + "Atlasname": "CPAC200", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "201", + "AverageVolumePerRegion": "4490.691542288557", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://github.com/FCP-INDI/C-PAC" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/CPAC200_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/CPAC200_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-4_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-4_dseg.json index dc9f9ea..c06e1d1 100644 --- a/atlases/label/Human/Metadata-json/CPAC200_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "CPAC200", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "201", - "Average Volume Per Region": "544.0298507462686", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://github.com/FCP-INDI/C-PAC" - }, "rois": { "0": { "label": null, @@ -1821,5 +1809,25 @@ ], "size": 95 } - } + }, + "Atlasname": "CPAC200", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "201", + "AverageVolumePerRegion": "544.0298507462686", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://github.com/FCP-INDI/C-PAC" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/CPAC200_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/CPAC200_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-CPAC200_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-1_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-1_dseg.json index 715756b..4137094 100644 --- a/atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DKT", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "84", - "Average Volume Per Region": "85964.66666666667", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.frontiersin.org/articles/10.3389/fnins.2012.00171/full" - }, "rois": { "0": { "label": null, @@ -768,5 +756,25 @@ ], "size": 28493 } - } + }, + "Atlasname": "DKT", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "84", + "AverageVolumePerRegion": "85964.66666666667", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.frontiersin.org/articles/10.3389/fnins.2012.00171/full" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DKT_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DKT_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-2_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-2_dseg.json index b47a157..87ad315 100644 --- a/atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DKT", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "84", - "Average Volume Per Region": "10745.583333333334", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.frontiersin.org/articles/10.3389/fnins.2012.00171/full" - }, "rois": { "0": { "label": null, @@ -768,5 +756,25 @@ ], "size": 3556 } - } + }, + "Atlasname": "DKT", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "84", + "AverageVolumePerRegion": "10745.583333333334", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.frontiersin.org/articles/10.3389/fnins.2012.00171/full" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DKT_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DKT_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-4_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-4_dseg.json index 804dbac..e014e3b 100644 --- a/atlases/label/Human/Metadata-json/DKT_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DKT", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "84", - "Average Volume Per Region": "1301.7857142857142", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.frontiersin.org/articles/10.3389/fnins.2012.00171/full" - }, "rois": { "0": { "label": null, @@ -768,5 +756,25 @@ ], "size": 445 } - } + }, + "Atlasname": "DKT", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "84", + "AverageVolumePerRegion": "1301.7857142857142", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.frontiersin.org/articles/10.3389/fnins.2012.00171/full" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DKT_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DKT_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DKT_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-1_dseg.json similarity index 96% rename from atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-1_dseg.json index c797ec9..c01c5a8 100644 --- a/atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00071", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "71", - "Average Volume Per Region": "101704.67605633802", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -651,5 +639,25 @@ ], "size": 77 } - } + }, + "Atlasname": "DS00071", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "71", + "AverageVolumePerRegion": "101704.67605633802", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00071_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00071_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-2_dseg.json similarity index 96% rename from atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-2_dseg.json index 8b9d45a..316537e 100644 --- a/atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00071", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "69", - "Average Volume Per Region": "13081.579710144928", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -633,5 +621,25 @@ ], "size": 7 } - } + }, + "Atlasname": "DS00071", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "69", + "AverageVolumePerRegion": "13081.579710144928", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00071_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00071_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-4_dseg.json similarity index 96% rename from atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-4_dseg.json index cddad6a..d080658 100644 --- a/atlases/label/Human/Metadata-json/DS00071_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00071", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "67", - "Average Volume Per Region": "1632.089552238806", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -615,5 +603,25 @@ ], "size": 21 } - } + }, + "Atlasname": "DS00071", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "67", + "AverageVolumePerRegion": "1632.089552238806", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00071_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00071_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00071_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-1_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-1_dseg.json index c9bb325..35bcec3 100644 --- a/atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00096", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "96", - "Average Volume Per Region": "75219.08333333333", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -876,5 +864,25 @@ ], "size": 335 } - } + }, + "Atlasname": "DS00096", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "96", + "AverageVolumePerRegion": "75219.08333333333", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00096_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00096_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-2_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-2_dseg.json index 59b12e6..7a40bd4 100644 --- a/atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00096", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "94", - "Average Volume Per Region": "9602.436170212766", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -858,5 +846,25 @@ ], "size": 63 } - } + }, + "Atlasname": "DS00096", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "94", + "AverageVolumePerRegion": "9602.436170212766", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00096_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00096_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-4_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-4_dseg.json index cb72567..270ba47 100644 --- a/atlases/label/Human/Metadata-json/DS00096_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00096", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "89", - "Average Volume Per Region": "1228.6516853932585", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -813,5 +801,25 @@ ], "size": 6 } - } + }, + "Atlasname": "DS00096", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "89", + "AverageVolumePerRegion": "1228.6516853932585", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00096_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00096_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00096_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-1_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-1_dseg.json index 78505bc..f9fae78 100644 --- a/atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00108", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "108", - "Average Volume Per Region": "66861.4074074074", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -984,5 +972,25 @@ ], "size": 1528 } - } + }, + "Atlasname": "DS00108", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "108", + "AverageVolumePerRegion": "66861.4074074074", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00108_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00108_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-2_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-2_dseg.json index 49fd7fd..d5faa07 100644 --- a/atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00108", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "108", - "Average Volume Per Region": "8357.675925925925", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -984,5 +972,25 @@ ], "size": 208 } - } + }, + "Atlasname": "DS00108", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "108", + "AverageVolumePerRegion": "8357.675925925925", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00108_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00108_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-4_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-4_dseg.json index c772099..e61c2f6 100644 --- a/atlases/label/Human/Metadata-json/DS00108_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00108", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "103", - "Average Volume Per Region": "1061.6504854368932", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -939,5 +927,25 @@ ], "size": 17 } - } + }, + "Atlasname": "DS00108", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "103", + "AverageVolumePerRegion": "1061.6504854368932", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00108_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00108_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00108_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-1_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-1_dseg.json index e6067d7..eff9120 100644 --- a/atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00140", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "140", - "Average Volume Per Region": "51578.8", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -1272,5 +1260,25 @@ ], "size": 567 } - } + }, + "Atlasname": "DS00140", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "140", + "AverageVolumePerRegion": "51578.8", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00140_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00140_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-2_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-2_dseg.json index b2d32a6..33d3b49 100644 --- a/atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00140", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "134", - "Average Volume Per Region": "6736.037313432836", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -1218,5 +1206,25 @@ ], "size": 77 } - } + }, + "Atlasname": "DS00140", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "134", + "AverageVolumePerRegion": "6736.037313432836", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00140_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00140_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-4_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-4_dseg.json index a29fd27..7ad3acc 100644 --- a/atlases/label/Human/Metadata-json/DS00140_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00140", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "128", - "Average Volume Per Region": "854.296875", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -1164,5 +1152,25 @@ ], "size": 9 } - } + }, + "Atlasname": "DS00140", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "128", + "AverageVolumePerRegion": "854.296875", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00140_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00140_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00140_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-1_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-1_dseg.json index 38d3a07..dc79290 100644 --- a/atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00195", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "195", - "Average Volume Per Region": "37030.933333333334", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -1767,5 +1755,25 @@ ], "size": 17 } - } + }, + "Atlasname": "DS00195", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "195", + "AverageVolumePerRegion": "37030.933333333334", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00195_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00195_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-2_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-2_dseg.json index 5970af7..9a4ce65 100644 --- a/atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00195", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "189", - "Average Volume Per Region": "4775.814814814815", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -1713,5 +1701,25 @@ ], "size": 6 } - } + }, + "Atlasname": "DS00195", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "189", + "AverageVolumePerRegion": "4775.814814814815", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00195_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00195_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-4_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-4_dseg.json index b4129e2..dd9fe01 100644 --- a/atlases/label/Human/Metadata-json/DS00195_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00195", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "177", - "Average Volume Per Region": "617.7966101694915", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -1605,5 +1593,25 @@ ], "size": 55 } - } + }, + "Atlasname": "DS00195", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "177", + "AverageVolumePerRegion": "617.7966101694915", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00195_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00195_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00195_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-1_dseg.json index 87f4501..d53e5d8 100644 --- a/atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00278", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "278", - "Average Volume Per Region": "25974.93525179856", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -2514,5 +2502,25 @@ ], "size": 8 } - } + }, + "Atlasname": "DS00278", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "278", + "AverageVolumePerRegion": "25974.93525179856", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00278_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00278_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-2_dseg.json index 6352c7f..ab683df 100644 --- a/atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00278", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "273", - "Average Volume Per Region": "3306.3333333333335", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -2469,5 +2457,25 @@ ], "size": 4 } - } + }, + "Atlasname": "DS00278", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "273", + "AverageVolumePerRegion": "3306.3333333333335", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00278_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00278_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-4_dseg.json index 660dfc9..541975d 100644 --- a/atlases/label/Human/Metadata-json/DS00278_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00278", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "253", - "Average Volume Per Region": "432.2134387351779", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -2289,5 +2277,25 @@ ], "size": 29 } - } + }, + "Atlasname": "DS00278", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "253", + "AverageVolumePerRegion": "432.2134387351779", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00278_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00278_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00278_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-1_dseg.json index 6362f06..290ae49 100644 --- a/atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00350", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "350", - "Average Volume Per Region": "20631.52", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -3162,5 +3150,25 @@ ], "size": 4 } - } + }, + "Atlasname": "DS00350", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "350", + "AverageVolumePerRegion": "20631.52", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00350_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00350_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-2_dseg.json index ed8e1f6..fbde927 100644 --- a/atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00350", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "341", - "Average Volume Per Region": "2647.0058651026393", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -3081,5 +3069,25 @@ ], "size": 2 } - } + }, + "Atlasname": "DS00350", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "341", + "AverageVolumePerRegion": "2647.0058651026393", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00350_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00350_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-4_dseg.json index 3250e01..39e3585 100644 --- a/atlases/label/Human/Metadata-json/DS00350_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00350", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "317", - "Average Volume Per Region": "344.9526813880126", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -2865,5 +2853,25 @@ ], "size": 7 } - } + }, + "Atlasname": "DS00350", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "317", + "AverageVolumePerRegion": "344.9526813880126", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00350_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00350_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00350_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-1_dseg.json index 445ee12..73bde5e 100644 --- a/atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00446", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "446", - "Average Volume Per Region": "16190.65470852018", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -4026,5 +4014,25 @@ ], "size": 11 } - } + }, + "Atlasname": "DS00446", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "446", + "AverageVolumePerRegion": "16190.65470852018", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00446_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00446_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-2_dseg.json index 1d4833e..c9d252d 100644 --- a/atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00446", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "431", - "Average Volume Per Region": "2094.2668213457077", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -3891,5 +3879,25 @@ ], "size": 4 } - } + }, + "Atlasname": "DS00446", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "431", + "AverageVolumePerRegion": "2094.2668213457077", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00446_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00446_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-4_dseg.json index 77b67b1..9cdd182 100644 --- a/atlases/label/Human/Metadata-json/DS00446_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00446", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "408", - "Average Volume Per Region": "268.0147058823529", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -3684,5 +3672,25 @@ ], "size": 7 } - } + }, + "Atlasname": "DS00446", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "408", + "AverageVolumePerRegion": "268.0147058823529", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00446_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00446_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00446_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-1_dseg.json index 4c4a3de..1a4ac9a 100644 --- a/atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00583", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "583", - "Average Volume Per Region": "12385.989708404803", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -5259,5 +5247,25 @@ ], "size": 18 } - } + }, + "Atlasname": "DS00583", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "583", + "AverageVolumePerRegion": "12385.989708404803", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00583_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00583_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-2_dseg.json index 167aba7..8e9d08a 100644 --- a/atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00583", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "579", - "Average Volume Per Region": "1558.9447322970639", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -5223,5 +5211,25 @@ ], "size": 9 } - } + }, + "Atlasname": "DS00583", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "579", + "AverageVolumePerRegion": "1558.9447322970639", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00583_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00583_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-4_dseg.json index 2b4e3c3..368aad3 100644 --- a/atlases/label/Human/Metadata-json/DS00583_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00583", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "554", - "Average Volume Per Region": "197.3826714801444", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -4998,5 +4986,25 @@ ], "size": 1 } - } + }, + "Atlasname": "DS00583", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "554", + "AverageVolumePerRegion": "197.3826714801444", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00583_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00583_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00583_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-1_dseg.json index 69784dc..353a297 100644 --- a/atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00833", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "833", - "Average Volume Per Region": "8668.70588235294", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -7509,5 +7497,25 @@ ], "size": 36 } - } + }, + "Atlasname": "DS00833", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "833", + "AverageVolumePerRegion": "8668.70588235294", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00833_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00833_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-2_dseg.json index 4c3594c..5134acd 100644 --- a/atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00833", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "809", - "Average Volume Per Region": "1115.734239802225", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -7293,5 +7281,25 @@ ], "size": 9 } - } + }, + "Atlasname": "DS00833", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "809", + "AverageVolumePerRegion": "1115.734239802225", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00833_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00833_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-4_dseg.json index db69143..4a2a6e4 100644 --- a/atlases/label/Human/Metadata-json/DS00833_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS00833", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "774", - "Average Volume Per Region": "141.27906976744185", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -6978,5 +6966,25 @@ ], "size": 3 } - } + }, + "Atlasname": "DS00833", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "774", + "AverageVolumePerRegion": "141.27906976744185", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS00833_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS00833_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS00833_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-1_dseg.json index 0b2639e..fc5a530 100644 --- a/atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS01216", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1216", - "Average Volume Per Region": "5938.348684210527", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -10956,5 +10944,25 @@ ], "size": 34 } - } + }, + "Atlasname": "DS01216", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1216", + "AverageVolumePerRegion": "5938.348684210527", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS01216_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS01216_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-2_dseg.json index 18f9584..aa01368 100644 --- a/atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS01216", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1178", - "Average Volume Per Region": "766.2385398981324", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -10614,5 +10602,25 @@ ], "size": 3 } - } + }, + "Atlasname": "DS01216", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1178", + "AverageVolumePerRegion": "766.2385398981324", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS01216_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS01216_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-4_dseg.json index 5febd74..fac5666 100644 --- a/atlases/label/Human/Metadata-json/DS01216_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS01216", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1107", - "Average Volume Per Region": "98.78048780487805", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -9975,5 +9963,25 @@ ], "size": 4 } - } + }, + "Atlasname": "DS01216", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1107", + "AverageVolumePerRegion": "98.78048780487805", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS01216_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS01216_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS01216_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-1_dseg.json index 8e526b2..6942f15 100644 --- a/atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS01876", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1876", - "Average Volume Per Region": "3849.1641791044776", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -16896,5 +16884,25 @@ ], "size": 12 } - } + }, + "Atlasname": "DS01876", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1876", + "AverageVolumePerRegion": "3849.1641791044776", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS01876_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS01876_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-2_dseg.json index 387f452..af9abde 100644 --- a/atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS01876", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1822", - "Average Volume Per Region": "495.40559824368825", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -16410,5 +16398,25 @@ ], "size": 20 } - } + }, + "Atlasname": "DS01876", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1822", + "AverageVolumePerRegion": "495.40559824368825", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS01876_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS01876_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-4_dseg.json index 856ebfc..67dc82b 100644 --- a/atlases/label/Human/Metadata-json/DS01876_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS01876", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1730", - "Average Volume Per Region": "63.20809248554913", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -15582,5 +15570,25 @@ ], "size": 2 } - } + }, + "Atlasname": "DS01876", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1730", + "AverageVolumePerRegion": "63.20809248554913", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS01876_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS01876_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS01876_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-1_dseg.json index b6c2786..1034c20 100644 --- a/atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS03231", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "3231", - "Average Volume Per Region": "2234.9216960693284", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -29091,5 +29079,25 @@ ], "size": 13 } - } + }, + "Atlasname": "DS03231", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "3231", + "AverageVolumePerRegion": "2234.9216960693284", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS03231_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS03231_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-2_dseg.json index ada25a8..32a320c 100644 --- a/atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS03231", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "3146", - "Average Volume Per Region": "286.91322314049586", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -28326,5 +28314,25 @@ ], "size": 3 } - } + }, + "Atlasname": "DS03231", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "3146", + "AverageVolumePerRegion": "286.91322314049586", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS03231_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS03231_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-4_dseg.json index b3f6a1b..f3f6151 100644 --- a/atlases/label/Human/Metadata-json/DS03231_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS03231", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "2927", - "Average Volume Per Region": "37.35907072087461", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -26355,5 +26343,25 @@ ], "size": 3 } - } + }, + "Atlasname": "DS03231", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "2927", + "AverageVolumePerRegion": "37.35907072087461", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS03231_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS03231_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS03231_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-1_dseg.json index 1ad0a2a..64b7190 100644 --- a/atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS06481", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "6481", - "Average Volume Per Region": "1114.1848480172812", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -58341,5 +58329,25 @@ ], "size": 4 } - } + }, + "Atlasname": "DS06481", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "6481", + "AverageVolumePerRegion": "1114.1848480172812", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS06481_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS06481_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-2_dseg.json index 126f7d6..aef60da 100644 --- a/atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS06481", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "6273", - "Average Volume Per Region": "143.89112067591265", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -56469,5 +56457,25 @@ ], "size": 2 } - } + }, + "Atlasname": "DS06481", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "6273", + "AverageVolumePerRegion": "143.89112067591265", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS06481_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS06481_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-4_dseg.json index 82c803a..c78ca6c 100644 --- a/atlases/label/Human/Metadata-json/DS06481_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS06481", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "5904", - "Average Volume Per Region": "18.521341463414632", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -53148,5 +53136,25 @@ ], "size": 3 } - } + }, + "Atlasname": "DS06481", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "5904", + "AverageVolumePerRegion": "18.521341463414632", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS06481_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS06481_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS06481_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-1_dseg.json index b81f3ad..342bf2c 100644 --- a/atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS16784", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "16784", - "Average Volume Per Region": "430.2330791229743", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -151068,5 +151056,25 @@ ], "size": 2 } - } + }, + "Atlasname": "DS16784", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "16784", + "AverageVolumePerRegion": "430.2330791229743", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS16784_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS16784_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-2_dseg.json index 79ba05f..b842ac2 100644 --- a/atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS16784", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "16282", - "Average Volume Per Region": "55.43723129836629", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -146550,5 +146538,25 @@ ], "size": 2 } - } + }, + "Atlasname": "DS16784", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "16282", + "AverageVolumePerRegion": "55.43723129836629", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS16784_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS16784_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-4_dseg.json index 7bf9ff3..b2cea1e 100644 --- a/atlases/label/Human/Metadata-json/DS16784_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS16784", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "15252", - "Average Volume Per Region": "7.16955153422502", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -137280,5 +137268,25 @@ ], "size": 1 } - } + }, + "Atlasname": "DS16784", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "15252", + "AverageVolumePerRegion": "7.16955153422502", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS16784_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS16784_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS16784_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-1_dseg.json index 0835575..ed1ebdb 100644 --- a/atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS72784", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "72784", - "Average Volume Per Region": "99.21180479226203", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -655068,5 +655056,25 @@ ], "size": 3 } - } + }, + "Atlasname": "DS72784", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "72784", + "AverageVolumePerRegion": "99.21180479226203", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS72784_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS72784_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-2_dseg.json index 29a4d9b..62416a8 100644 --- a/atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS72784", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "70263", - "Average Volume Per Region": "12.846434111836956", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -632379,5 +632367,25 @@ ], "size": 1 } - } + }, + "Atlasname": "DS72784", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "70263", + "AverageVolumePerRegion": "12.846434111836956", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS72784_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS72784_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-4_dseg.json index 851da63..4ad6b85 100644 --- a/atlases/label/Human/Metadata-json/DS72784_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DS72784", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "28521", - "Average Volume Per Region": "3.8340170400757336", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://arxiv.org/pdf/1312.4318.pdf" - }, "rois": { "0": { "label": null, @@ -256701,5 +256689,25 @@ ], "size": 1 } - } + }, + "Atlasname": "DS72784", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "28521", + "AverageVolumePerRegion": "3.8340170400757336", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://arxiv.org/pdf/1312.4318.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DS72784_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DS72784_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DS72784_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-1_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-1_dseg.json index f144074..59f37df 100644 --- a/atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DesikanKlein", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "97", - "Average Volume Per Region": "74443.62886597938", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" - }, "rois": { "0": { "label": null, @@ -885,5 +873,25 @@ ], "size": 8155 } - } + }, + "Atlasname": "DesikanKlein", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "97", + "AverageVolumePerRegion": "74443.62886597938", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DesikanKlein_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DesikanKlein_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-2_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-2_dseg.json index fbadb59..24055ae 100644 --- a/atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DesikanKlein", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "97", - "Average Volume Per Region": "9305.453608247422", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" - }, "rois": { "0": { "label": null, @@ -885,5 +873,25 @@ ], "size": 1038 } - } + }, + "Atlasname": "DesikanKlein", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "97", + "AverageVolumePerRegion": "9305.453608247422", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DesikanKlein_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DesikanKlein_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-4_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-4_dseg.json index 6cdbfa5..14c09e4 100644 --- a/atlases/label/Human/Metadata-json/DesikanKlein_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "DesikanKlein", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "94", - "Average Volume Per Region": "1163.2978723404256", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" - }, "rois": { "0": { "label": null, @@ -858,5 +846,25 @@ ], "size": 131 } - } + }, + "Atlasname": "DesikanKlein", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "94", + "AverageVolumePerRegion": "1163.2978723404256", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/DesikanKlein_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/DesikanKlein_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-DesikanKlein_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Desikan_dseg.tsv b/atlases/label/Human/atlas-Desikan_dseg.tsv new file mode 100644 index 0000000..91e7c22 --- /dev/null +++ b/atlases/label/Human/atlas-Desikan_dseg.tsv @@ -0,0 +1,71 @@ +index label hemisphere +1 L_white_matter left +2 L_Banks_superior_temporal_sulcus left +3 L_caudal_anterior_cingulate_cortex left +4 L_caudal_middle_frontal_gyrus left +5 L_corpus_calosum left +6 L_cuneus_cortex left +7 L_entorhinal_cortex left +8 L_fusiform_gyrus left +9 L_inferior_parietal_cortex left +10 L_inferior_temporal_gyrus left +11 L_isthmus-cingulate_cortex left +12 L_lateral_occipital_cortex left +13 L_lateral_orbitofrontal_cortex left +14 L_lingual_gyrus left +15 L_medial_orbitofrontal_cortex left +16 L_middle_temporal_gyrus left +17 L_parahippocampal_gyrus left +18 L_paracentral_lobule left +19 L_pars_opercularis left +20 L_pars_orbitalis left +21 L_pars_triangularis left +22 L_pericalcarine_cortex left +23 L_postcentral_gyrus left +24 L_posterior-cingulate_cortex left +25 L_precentral_gyrus left +26 L_precuneus_cortex left +27 L_rostral_anterior_cingulate_cortex left +28 L_rostral_middle_frontal_gyrus left +29 L_superior_frontal_gyrus left +30 L_superior_parietal_cortex left +31 L_superior_temporal_gyrus left +32 L_supramarginal_gyrus left +33 L_frontal_pole left +34 L_temporal_pole left +35 L_transverse_temporal_cortex left +36 R_white_matter right +37 R_Banks_superior_temporal_sulcus right +38 R_caudal_anterior_cingulate_cortex right +39 R_caudal_middle_frontal_gyrus right +40 R_corpus_calosum right +41 R_cuneus_cortex right +42 R_entorhinal_cortex right +43 R_fusiform_gyrus right +44 R_inferior_parietal_cortex right +45 R_inferior_temporal_gyrus right +46 R_isthmus-cingulate_cortex right +47 R_lateral_occipital_cortex right +48 R_lateral_orbitofrontal_cortex right +49 R_lingual_gyrus right +50 R_medial_orbitofrontal_cortex right +51 R_middle_temporal_gyrus right +52 R_parahippocampal_gyrus right +53 R_paracentral_lobule right +54 R_pars_opercularis right +55 R_pars_orbitalis right +56 R_pars_triangularis right +57 R_pericalcarine_cortex right +58 R_postcentral_gyrus right +59 R_posterior-cingulate_cortex right +60 R_precentral_gyrus right +61 R_precuneus_cortex right +62 R_rostral_anterior_cingulate_cortex right +63 R_rostral_middle_frontal_gyrus right +64 R_superior_frontal_gyrus right +65 R_superior_parietal_cortex right +66 R_superior_temporal_gyrus right +67 R_supramarginal_gyrus right +68 R_frontal_pole right +69 R_temporal_pole right +70 R_transverse_temporal_cortex right diff --git a/atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-1_dseg.json similarity index 96% rename from atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-1_dseg.json index c09909b..c01ef64 100644 --- a/atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Desikan", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "70", - "Average Volume Per Region": "24786.85714285714", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" - }, "rois": { "0": { "label": "empty", @@ -646,5 +634,25 @@ ], "size": 3343 } - } + }, + "Atlasname": "Desikan", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "70", + "AverageVolumePerRegion": "24786.85714285714", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Desikan_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Desikan_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-2_dseg.json similarity index 96% rename from atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-2_dseg.json index 0450384..bc45872 100644 --- a/atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Desikan", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "70", - "Average Volume Per Region": "3097.7", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" - }, "rois": { "0": { "label": "empty", @@ -646,5 +634,25 @@ ], "size": 408 } - } + }, + "Atlasname": "Desikan", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "70", + "AverageVolumePerRegion": "3097.7", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Desikan_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Desikan_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-4_dseg.json similarity index 96% rename from atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-4_dseg.json index 7f2f8d5..7a5b2c6 100644 --- a/atlases/label/Human/Metadata-json/Desikan_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Desikan", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "70", - "Average Volume Per Region": "387.14285714285717", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" - }, "rois": { "0": { "label": "empty", @@ -646,5 +634,25 @@ ], "size": 51 } - } + }, + "Atlasname": "Desikan", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "70", + "AverageVolumePerRegion": "387.14285714285717", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Desikan_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Desikan_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Desikan_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Destrieux_dseg.tsv b/atlases/label/Human/atlas-Destrieux_dseg.tsv new file mode 100644 index 0000000..11f7ea2 --- /dev/null +++ b/atlases/label/Human/atlas-Destrieux_dseg.tsv @@ -0,0 +1,75 @@ +index label hemisphere +1 Fronto-marginal_gyrus+sulcus bilateral +2 Inferior_occipital_gyrus+sulcus bilateral +3 Paracentral_lobule+sulcus bilateral +4 Subcentral_gyrus+sulci bilateral +5 Transverse_frontopolar_gyri+sulci bilateral +6 Cingulate_gyrus+sulcus_anterior_part bilateral +7 Cingulate_gyrus+sulcus_middle-anterior_part bilateral +8 Cingulate_gyrus+sulcus_middle-posterior_part bilateral +9 Cingulate_gyrus_posterior-dorsal_part bilateral +10 Cingulate_gyrus_posterior-ventral_part bilateral +11 Cuneus bilateral +12 Inferior_frontal_gyrus_opercular_part bilateral +13 Inferior_frontal_gyrus_orbital_part bilateral +14 Inferior_frontal_gyrus_triangular_part bilateral +15 Middle_frontal_gyrus bilateral +16 Superior_frontal_gyrus bilateral +17 Insula_insular_gyrus+central_sulcus bilateral +18 Insular_gyri_short bilateral +19 Middle_occipital_gyrus bilateral +20 Superior_occipital_gyrus bilateral +21 Lateral_occipito-temporal_gyrus bilateral +22 Lingual_gyrus bilateral +23 Parahippocampal_gyrus bilateral +24 Orbital_gyri bilateral +25 Angular_gyrus bilateral +26 Supramarginal_gyrus bilateral +27 Superior_parietal_lobule bilateral +28 Postcentral_gyrus bilateral +29 Precentral_gyrus bilateral +30 Precuneus bilateral +31 Straight_gyrus bilateral +32 Subcallosal_area+gyrus bilateral +33 Anterior_transverse_temporal_gyrus bilateral +34 Superior_temporal_gyrus_lateral_aspect bilateral +35 Superior_temporal_gyrus_planum_polare bilateral +36 Planum_temporale bilateral +37 Inferior_temporal_gyrus bilateral +38 Middle_temporal_gyrus bilateral +39 Anterior_segment_of_lateral_sulcus_horizontal_ramus bilateral +40 Anterior_segment_of_lateral_sulcus_vertical_ramus bilateral +41 Lateral_sulcus_posterior_ramus bilateral +43 Occipital_pole bilateral +44 Temporal_pole bilateral +45 Calcarine_sulcus bilateral +46 Central_sulcus bilateral +47 Cingulate_sulcus_marginal_branch bilateral +48 Insula_circular_sulcus_anterior_part bilateral +49 Insula_circular_sulcus_inferior_part bilateral +50 Insula_circular_sulcus_superior_part bilateral +51 Anterior_transverse_collateral_sulcus bilateral +52 Posterior_transverse_collateral_sulcus bilateral +53 Inferior_frontal_sulcus bilateral +54 Middle_frontal_sulcus bilateral +55 Superior_frontal_sulcus bilateral +56 Sulcus_intermedius_primus bilateral +57 Intraparietal_sulcus+transverse_parietal_sulci bilateral +58 Middle_occipital+lunatus_sulcus bilateral +59 Superior+transverse_occipital_sulcus bilateral +60 Anterior_occipital_sulcus+preoccipital_notch bilateral +61 Lateral_occipito-temporal_sulcus bilateral +62 Collateral+lingual_sulcus bilateral +63 Lateral_orbital_sulcus bilateral +64 Olfactory_sulcus bilateral +65 Orbital_sulci bilateral +66 Parieto-occipital_sulcus bilateral +67 Pericallosal_sulcus bilateral +68 Postcentral_sulcus bilateral +69 Precentral_sulcus_inferior_part bilateral +70 Precentral_sulcus_superior_part bilateral +71 Suborbital_sulcus bilateral +72 Subparietal_sulcus bilateral +73 Inferior_temporal_sulcus bilateral +74 Superior_temporal_sulcus bilateral +75 Transverse_temporal_sulcus bilateral diff --git a/atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-1_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-1_dseg.json index 740a353..3e8d1f1 100644 --- a/atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Destrieux", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "75", - "Average Volume Per Region": "96280.42666666667", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/20547229" - }, "rois": { "0": { "label": "null", @@ -692,5 +680,25 @@ ], "size": 1616 } - } + }, + "Atlasname": "Destrieux", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "75", + "AverageVolumePerRegion": "96280.42666666667", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/20547229" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Destrieux_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Destrieux_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-2_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-2_dseg.json index 5500f0f..3c2c559 100644 --- a/atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Destrieux", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "75", - "Average Volume Per Region": "12035.053333333333", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/20547229" - }, "rois": { "0": { "label": "null", @@ -692,5 +680,25 @@ ], "size": 202 } - } + }, + "Atlasname": "Destrieux", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "75", + "AverageVolumePerRegion": "12035.053333333333", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/20547229" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Destrieux_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Destrieux_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-4_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-4_dseg.json index 7750209..d60a2a2 100644 --- a/atlases/label/Human/Metadata-json/Destrieux_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Destrieux", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "75", - "Average Volume Per Region": "1458.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/20547229" - }, "rois": { "0": { "label": "null", @@ -692,5 +680,25 @@ ], "size": 26 } - } + }, + "Atlasname": "Destrieux", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "75", + "AverageVolumePerRegion": "1458.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/20547229" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Destrieux_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Destrieux_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Destrieux_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Glasser_dseg.tsv b/atlases/label/Human/atlas-Glasser_dseg.tsv new file mode 100644 index 0000000..d8d1132 --- /dev/null +++ b/atlases/label/Human/atlas-Glasser_dseg.tsv @@ -0,0 +1,181 @@ +index label hemisphere +1 Primary_visual_cortex bilateral +2 Medial_superior_temporal_area bilateral +3 Sixth_Visual_Area bilateral +4 Second_Visual_Area bilateral +5 Third_Visual_Area bilateral +6 Forth_Visual_Area bilateral +7 Eighth_Visual_Area bilateral +8 Primary_Motor_Cortex bilateral +9 Primary_Sensory_Cortex bilateral +10 Frontal_Eye_Field bilateral +11 Premotor_Eye_Field bilateral +12 Area_55b bilateral +13 Area_V3A bilateral +14 RetroSplenial_Complex bilateral +15 Parieto-Occipital_Sulcus_Area_2 bilateral +16 Seventh_Visual_Area bilateral +17 IntraParietal_Sulcus_Area_1 bilateral +18 Fusiform_Face_Complex bilateral +19 Area_V3B bilateral +20 Lateral_Occipital_Area_1 bilateral +21 Lateral_Occipital_Area_2 bilateral +22 Posterior_InferoTemporal_Complex bilateral +23 Middle_Temporal_Area bilateral +24 Primary_Auditory_Cortex bilateral +25 PeriSylvian_Language_Area bilateral +26 Superior_Frontal_Language_Area bilateral +27 PreCuneus_Visual_Area bilateral +28 Superior_Temporal_Visual_Area bilateral +29 Medial_Area_7P bilateral +30 Area_7m bilateral +31 Parieto-Occipital_Sulcus_Area_1 bilateral +32 Area_23d bilateral +33 Area_Ventral_23_a+b bilateral +34 Area_Dorsal_23_a+b bilateral +35 Area_31p_Ventral bilateral +36 Area_5m bilateral +37 Area_5m_ventral bilateral +38 Area_23c bilateral +39 Area_5L bilateral +40 Dorsal_Area_24d bilateral +41 Lateral_Area_7A bilateral +42 Supplementary_and_Cingulate_Eye_Field bilateral +43 Area_6m_Anterior bilateral +44 Medial_6m_anterior bilateral +45 Medial_Area_7A bilateral +46 Lateral_Area_7P bilateral +47 Area_7PC bilateral +48 Area_Lateral_IntraParietal_ventral bilateral +49 Ventral_IntraParietal_Complex bilateral +50 Medial_IntraParietal_Area bilateral +51 Area_1 bilateral +52 Area_2 bilateral +53 Area_3a bilateral +54 Dorsal_area_6 bilateral +55 Area_6mp bilateral +56 Ventral_Area_6 bilateral +57 Area_Posterior_24 bilateral +58 Area_33_prime bilateral +59 Anterior_24_prime bilateral +60 Area_p32_prime bilateral +61 Area_a24 bilateral +62 Area_dorsal_32 bilateral +63 Area_8BM bilateral +64 Area_p32 bilateral +65 Area_10r bilateral +66 Area_47m bilateral +67 Area_8Av bilateral +68 Area_8Ad bilateral +69 Area_9_Middle bilateral +70 Area_8B_Lateral bilateral +71 Area_9_Posterior bilateral +72 Area_10d bilateral +73 Area_8C bilateral +74 Area_44 bilateral +75 Area_45 bilateral +76 Area_47L bilateral +77 Area_anterior_47R bilateral +78 Rostral_Area_6 bilateral +79 Area_IFJa bilateral +80 Area_IFJp bilateral +81 Area_IFSp bilateral +82 Area_IFSa bilateral +83 Area_posterior_9-46v bilateral +84 Area_46 bilateral +85 Area_anterior_9-46v bilateral +86 Area_9-46d bilateral +87 Area_9_anterior bilateral +88 Area_10v bilateral +89 Area_anterior_10p bilateral +90 Polar_10p bilateral +91 Area_11 bilateral +92 Area_13 bilateral +93 Orbital_Frontal_Complex bilateral +94 Area_47s bilateral +95 Area_Lateral_IntraParietal_dorsal bilateral +96 Area_6_anterior bilateral +97 Inferior_6-8_Transitional_Area bilateral +98 Superior_6-8_Transitional_Area bilateral +99 Area_43 bilateral +100 Area_OP4/PV bilateral +101 Area_OP1/SII bilateral +102 Area_OP2-3/VS bilateral +103 Area_52 bilateral +104 RetroInsular_Cortex bilateral +105 Area_PFcm bilateral +106 Posterior_Insular_Area_2 bilateral +107 Area_TA2 bilateral +108 Frontal_OPercular_Area_4 bilateral +109 Middle_Insular_Area bilateral +110 Pirform_Cortex bilateral +111 Anterior_Ventral_Insular_Area bilateral +112 Anterior_Agranular_Insula_Complex bilateral +113 Frontal_OPercular_Area_1 bilateral +114 Frontal_OPercular_Area_3 bilateral +115 Frontal_OPercular_Area_2 bilateral +116 Area_PFt bilateral +117 Anterior_IntraParietal_Area bilateral +118 Entorhinal_Cortex bilateral +119 PreSubiculum bilateral +120 Hippocampus bilateral +121 ProStraite_Area bilateral +122 Perirhinal_Ectorhinal_Cortex bilateral +123 Area_STGa bilateral +124 ParaBelt_Complex bilateral +125 Auditory_5_Complex bilateral +126 ParaHippocampal_Area_1 bilateral +127 ParaHippocampal_Area_3 bilateral +128 Area_STSd_Anterior bilateral +129 Area_STSd_Posterior bilateral +130 Area_STSv_Posterior bilateral +131 Area_TG_Dorsal bilateral +132 Area_TE1_Anterior bilateral +133 Area_TE1_Posterior bilateral +134 Area_TE2_Anterior bilateral +135 Area_TF bilateral +136 Area_TE2_Posterior bilateral +137 Area_PHT bilateral +138 Area_PH bilateral +139 Area_TemporoParietoOccipital_Junction_1 bilateral +140 Area_TemporoParietoOccipital_Junction_2 bilateral +141 Area_TemporoParietoOccipital_Junction_3 bilateral +142 Dorsal_Transitional_Visual_Area bilateral +143 Area_PGp bilateral +144 Area_IntraParietal_2 bilateral +145 Area_IntraParietal_1 bilateral +146 Area_IntraParietal_0 bilateral +147 Area_PF_Opercular bilateral +148 Area_PF_Complex bilateral +149 Area_PFm_Complex bilateral +150 Area_PGi bilateral +151 Area_PGs bilateral +152 Area_V6A bilateral +153 VentroMedial_Visual_Area_1 bilateral +154 VentroMedial_Visual_Area_3 bilateral +155 ParaHippocampal_Area_2 bilateral +156 Area_V4t bilateral +157 Area_FST bilateral +158 Area_V3CD bilateral +159 Area_Lateral_Occipital_3 bilateral +160 VentroMedial_Visual_Area_2 bilateral +161 Area_31pd bilateral +162 Area_31a bilateral +163 Ventral_Visual_Complex bilateral +164 Area_25 bilateral +165 Area_s32 bilateral +166 Posterior_OFC_Complex bilateral +167 Area_Posterior_Insular_1 bilateral +168 Insular_Granular_Complex bilateral +169 Area_Frontal_Opercular_5 bilateral +170 Area_Posterior_10p bilateral +171 Area_Posterior_47r bilateral +172 Area_TG_ventral bilateral +173 Medial_Belt_Complex bilateral +174 Lateral_Belt_Complex bilateral +175 Auditory_4_Complex bilateral +176 Area_STSv_Anterior bilateral +177 Area_TE1_Middle bilateral +178 Para-Insular_Area bilateral +179 Area_Anterior_32_Prime bilateral +180 Area_Posterior_24 bilateral diff --git a/atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-1_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-1_dseg.json index 8476597..a45d9ba 100644 --- a/atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Glasser", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "180", - "Average Volume Per Region": "4175.955555555555", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/" - }, "rois": { "0": { "label": "empty", @@ -1636,5 +1624,25 @@ ], "size": 2912 } - } + }, + "Atlasname": "Glasser", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "180", + "AverageVolumePerRegion": "4175.955555555555", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Glasser_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Glasser_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-2_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-2_dseg.json index 8a060a5..488cdc4 100644 --- a/atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Glasser", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "180", - "Average Volume Per Region": "521.9944444444444", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/" - }, "rois": { "0": { "label": "empty", @@ -1636,5 +1624,25 @@ ], "size": 364 } - } + }, + "Atlasname": "Glasser", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "180", + "AverageVolumePerRegion": "521.9944444444444", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Glasser_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Glasser_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-4_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-4_dseg.json index a29bd3e..bd08c80 100644 --- a/atlases/label/Human/Metadata-json/Glasser_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Glasser", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "180", - "Average Volume Per Region": "65.39444444444445", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/" - }, "rois": { "0": { "label": "empty", @@ -1636,5 +1624,25 @@ ], "size": 50 } - } + }, + "Atlasname": "Glasser", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "180", + "AverageVolumePerRegion": "65.39444444444445", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Glasser_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Glasser_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Glasser_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Hammersmith_dseg.tsv b/atlases/label/Human/atlas-Hammersmith_dseg.tsv new file mode 100644 index 0000000..06bc3b3 --- /dev/null +++ b/atlases/label/Human/atlas-Hammersmith_dseg.tsv @@ -0,0 +1,84 @@ +index label hemisphere +1 R_Hippocampus right +2 L_Hippocampus left +3 R_Amygdala right +4 L_Amygdala left +5 R_Anterior_temporal_lobe_medial_part right +6 L_Anterior_temporal_lobe_medial_part left +7 R_Anterior_temporal_lobe_lateral_part right +8 L_Anterior_temporal_lobe_lateral_part left +9 R_Parahippocampal_and_ambient_gyri right +10 L_Parahippocampal_and_ambient_gyri left +11 R_Superior_temporal_gyrus_posterior_part right +12 L_Superior_temporal_gyrus_posterior_part left +13 R_Middle_and_inferior_temporal_gyrus right +14 L_Middle_and_inferior_temporal_gyrus left +15 R_Fusiform_gyrus right +16 L_Fusiform_gyrus left +17 R_Cerebellum right +18 L_Cerebellum left +19 Brainstem bilateral +20 L_Insula left +21 R_Insula right +22 L_Lateral_remainder_occipital_lobe left +23 R_Lateral_remainder_occipital_lobe right +24 L_Cingulate_gyrus_anterior_part left +25 R_Cingulate_gyrus_anterior_part right +26 L_Cingulate_gyrus_posterior_part left +27 R_Cingulate_gyrus_posterior_part right +28 L_Middle_frontal_gyrus left +29 R_Middle_frontal_gyrus right +30 L_Posterior_temporal_lobe left +31 R_Posterior_temporal_lobe right +32 L_Inferiolateral_remainder_parietal_lobe left +33 R_Inferiolateral_remainder_parietal_lobe right +34 L_Caudate_nucleus left +35 R_Caudate_nucleus right +36 L_Nucleus_accumbens left +37 R_Nucleus_accumbens right +38 L_Putamen left +39 R_Putamen right +40 L_Thalamus left +41 R_Thalamus right +42 L_Pallidum left +43 R_Pallidum right +44 Corpus_callosum bilateral +45 R_Lateral_ventricle_no_temporal_horn right +46 L_Lateral_ventricle_no_temporal_horn left +47 R_Lateral_ventricle_temporal_horn right +48 L_Lateral_ventricle_temporal_horn left +49 Third_ventricle bilateral +50 L_Precentral_gyrus left +51 R_Precentral_gyrus right +52 L_Straight_gyrus left +53 R_Straight_gyrus right +54 L_Anterior_orbital_gyrus left +55 R_Anterior_orbital_gyrus right +56 L_Inferior_frontal_gyrus left +57 R_Inferior_frontal_gyrus right +58 L_Superior_frontal_gyrus left +59 R_Superior_frontal_gyrus right +60 L_Postcentral_gyrus left +61 R_Postcentral_gyrus right +62 L_Superior_parietal_gyrus left +63 R_Superior_parietal_gyrus right +64 L_Lingual_gyrus left +65 R_Lingual_gyrus right +66 L_Cuneus left +67 R_Cuneus right +68 L_Medial_orbital_gyrus left +69 R_Medial_orbital_gyrus right +70 L_Lateral_orbital_gyrus left +71 R_Lateral_orbital_gyrus right +72 L_Posterior_orbital_gyrus left +73 R_Posterior_orbital_gyrus right +74 L_Substantia_nigra left +75 R_Substantia_nigra right +76 L_Subgenual_frontal_cortex left +77 R_Subgenual_frontal_cortex right +78 L_Subcallosal_area left +79 R_Subcallosal_area right +80 L_Pre-subgenual_frontal_cortex left +81 R_Pre-subgenual_frontal_cortex right +82 L_Superior_temporal_gyrus_anterior_part left +83 R_Superior_temporal_gyrus_anterior_part right diff --git a/atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-1_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-1_dseg.json index 37b1b22..1c3849c 100644 --- a/atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Hammersmith", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "83", - "Average Volume Per Region": "19947.722891566264", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://brain-development.org/brain-atlases/adult-brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/" - }, "rois": { "0": { "label": "empty", @@ -763,5 +751,25 @@ ], "size": 6323 } - } + }, + "Atlasname": "Hammersmith", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "83", + "AverageVolumePerRegion": "19947.722891566264", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://brain-development.org/brain-atlases/adult-brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Hammersmith_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Hammersmith_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-2_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-2_dseg.json index 7aaead5..096d0db 100644 --- a/atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Hammersmith", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "83", - "Average Volume Per Region": "2493.4337349397592", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://brain-development.org/brain-atlases/adult-brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/" - }, "rois": { "0": { "label": "empty", @@ -763,5 +751,25 @@ ], "size": 784 } - } + }, + "Atlasname": "Hammersmith", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "83", + "AverageVolumePerRegion": "2493.4337349397592", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://brain-development.org/brain-atlases/adult-brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Hammersmith_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Hammersmith_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-4_dseg.json similarity index 96% rename from atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-4_dseg.json index 7d1e0cb..4062d6d 100644 --- a/atlases/label/Human/Metadata-json/Hammersmith_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Hammersmith", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "83", - "Average Volume Per Region": "311.34939759036143", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://brain-development.org/brain-atlases/adult-brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/" - }, "rois": { "0": { "label": "empty", @@ -763,5 +751,25 @@ ], "size": 108 } - } + }, + "Atlasname": "Hammersmith", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "83", + "AverageVolumePerRegion": "311.34939759036143", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://brain-development.org/brain-atlases/adult-brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Hammersmith_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Hammersmith_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Hammersmith_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-1_dseg.json similarity index 95% rename from atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-1_dseg.json index 77380fe..8cb1310 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "HarvardOxford Cortical", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "49", - "Average Volume Per Region": "147368.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/HOA06" - }, "rois": { "0": { "label": "null", @@ -453,5 +441,25 @@ ], "size": 41973 } - } + }, + "Atlasname": "HarvardOxford Cortical", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "49", + "AverageVolumePerRegion": "147368.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/HOA06" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-2_dseg.json similarity index 95% rename from atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-2_dseg.json index eb4888f..44be1aa 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "HarvardOxford Cortical", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "49", - "Average Volume Per Region": "18421.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/HOA06" - }, "rois": { "0": { "label": "null", @@ -453,5 +441,25 @@ ], "size": 5256 } - } + }, + "Atlasname": "HarvardOxford Cortical", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "49", + "AverageVolumePerRegion": "18421.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/HOA06" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-4_dseg.json similarity index 95% rename from atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-4_dseg.json index b1da1fb..e8840f3 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "HarvardOxford Cortical", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "49", - "Average Volume Per Region": "2231.6326530612246", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/HOA06" - }, "rois": { "0": { "label": "null", @@ -453,5 +441,25 @@ ], "size": 658 } - } + }, + "Atlasname": "HarvardOxford Cortical", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "49", + "AverageVolumePerRegion": "2231.6326530612246", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/HOA06" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordcort-maxprob-thr25_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordcortMaxprobThr25_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-HarvardoxfordcortMaxprob_dseg.tsv b/atlases/label/Human/atlas-HarvardoxfordcortMaxprob_dseg.tsv new file mode 100644 index 0000000..080d7c5 --- /dev/null +++ b/atlases/label/Human/atlas-HarvardoxfordcortMaxprob_dseg.tsv @@ -0,0 +1,49 @@ +index label hemisphere +1 Frontal_Pole bilateral +2 Insular_Cortex bilateral +3 Superior_Frontal_Gyrus bilateral +4 Middle_Frontal_Gyrus bilateral +5 Inferior_Frontal_Gyrus_pars_triangularis bilateral +6 Inferior_Frontal_Gyrus_pars_opercularis bilateral +7 Subcallosal_Cortex bilateral +8 Temporal_Pole bilateral +9 Superior_Temporal_Gyrus_anterior_division bilateral +10 Superior_Temporal_Gyrus_posterior_division bilateral +11 Middle_Temporal_Gyrus_anterior_division bilateral +12 Middle_Temporal_Gyrus_posterior_division bilateral +13 Middle_Temporal_Gyrus_temporoocipital_part bilateral +14 Inferior_Temporal_Gyrus_anterior_division bilateral +15 Inferior_Temporal_Gyrus_posterior_division bilateral +16 Inferior_Temporal_Gyrus_temporoocipital_part bilateral +17 Postcentral_Gyrus bilateral +18 Superior_Parietal_Lobule bilateral +19 Supramarginal_Gyrus_anterior_division bilateral +20 Supramarginal_Gyrus_posterior_division bilateral +21 Angular_Gyrus bilateral +22 Lateral_Occipital_Cortex_superior_division bilateral +23 Lateral_Occipital_Cortex_inferior_division bilateral +24 Intracalcaring_Cortex bilateral +25 Frontal_Medial_Cortex bilateral +26 Justapositional_Lobule_Cortex_(formerly_Supplementary_Motor_Cortex) bilateral +27 Subcallosal_Cortex bilateral +28 Paracingulate_Gyrus bilateral +29 Cingulate_Gyrus_anterior_division bilateral +30 Cingulate_Gyrus_posterior_division bilateral +31 Precuneous_Cortex bilateral +32 Cuneal_Cortex bilateral +33 Frontal_Orbital_Cortex bilateral +34 Parahippocampal_Gyrus_anterior_division bilateral +35 Parahippocampal_Gyrus_posterior_division bilateral +36 Lingual_Gyrus bilateral +37 Temporal_Fusiform_Cortex_anterior_division bilateral +38 Temporal_Fusiform_Cortex_posterior_division bilateral +39 Temporal_Occipital_Fusiform_Cortex bilateral +40 Occipital_Fusiform_Gyrus bilateral +41 Frontal_Operculum_Cortex bilateral +42 Central_Opercular_Cortex bilateral +43 Parietal_Operculum_Cortex bilateral +44 Planum_Polare bilateral +45 Heschl's_Gyrus_(includes_H1_and_H2) bilateral +46 Planum_Temporale bilateral +47 Supracalcarine_Cortex bilateral +48 Occipital_Pole bilateral diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-1x1x1.json b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_desc-labelAll_dseg.json similarity index 90% rename from atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-1x1x1.json rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_desc-labelAll_dseg.json index f3e96cd..a35dc32 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-1x1x1.json +++ b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_desc-labelAll_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "HarvardOxford Subcortical", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "22", - "Average Volume Per Region": "328228.7272727273", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/HOA06" - }, "rois": { "0": { "label": "null", @@ -210,5 +198,25 @@ ], "size": 666 } - } + }, + "Atlasname": "HarvardOxford Subcortical", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "22", + "AverageVolumePerRegion": "328228.7272727273", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/HOA06" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-1x1x1.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_desc-labelAll_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_desc-labelAll_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_dseg.json similarity index 90% rename from atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_dseg.json index f3e96cd..a35dc32 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "HarvardOxford Subcortical", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "22", - "Average Volume Per Region": "328228.7272727273", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/HOA06" - }, "rois": { "0": { "label": "null", @@ -210,5 +198,25 @@ ], "size": 666 } - } + }, + "Atlasname": "HarvardOxford Subcortical", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "22", + "AverageVolumePerRegion": "328228.7272727273", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/HOA06" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-2x2x2.json b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_desc-labelAll_dseg.json similarity index 90% rename from atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-2x2x2.json rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_desc-labelAll_dseg.json index 0302a32..9a9f541 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-2x2x2.json +++ b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_desc-labelAll_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "HarvardOxford Subcortical", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "22", - "Average Volume Per Region": "41028.59090909091", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/HOA06" - }, "rois": { "0": { "label": "null", @@ -210,5 +198,25 @@ ], "size": 85 } - } + }, + "Atlasname": "HarvardOxford Subcortical", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "22", + "AverageVolumePerRegion": "41028.59090909091", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/HOA06" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-2x2x2.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_desc-labelAll_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_desc-labelAll_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_dseg.json similarity index 90% rename from atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_dseg.json index 0302a32..9a9f541 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "HarvardOxford Subcortical", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "22", - "Average Volume Per Region": "41028.59090909091", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/HOA06" - }, "rois": { "0": { "label": "null", @@ -210,5 +198,25 @@ ], "size": 85 } - } + }, + "Atlasname": "HarvardOxford Subcortical", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "22", + "AverageVolumePerRegion": "41028.59090909091", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/HOA06" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-4x4x4.json b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_desc-labelAll_dseg.json similarity index 91% rename from atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-4x4x4.json rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_desc-labelAll_dseg.json index b75d150..5e148a6 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-4x4x4.json +++ b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_desc-labelAll_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "", - "Number of Regions": "22", - "Average Volume Per Region": "4970.454545454545", - "Year Generated": "2020", - "Generation Method": "", - "Source": "" - }, "rois": { "0": { "label": null, @@ -210,5 +198,25 @@ ], "size": 10 } - } + }, + "Atlasname": "", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "", + "NumberOfRegions": "22", + "AverageVolumePerRegion": "4970.454545454545", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-4x4x4.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_desc-labelAll_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_desc-labelAll_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_dseg.json similarity index 90% rename from atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_dseg.json index 64cce80..faaaa06 100644 --- a/atlases/label/Human/Metadata-json/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "HarvardOxford Subcortical", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "22", - "Average Volume Per Region": "4970.454545454545", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/HOA06" - }, "rois": { "0": { "label": "null", @@ -210,5 +198,25 @@ ], "size": 10 } - } + }, + "Atlasname": "HarvardOxford Subcortical", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "22", + "AverageVolumePerRegion": "4970.454545454545", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/HOA06" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-HarvardoxfordsubMaxprobThr25_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-HarvardoxfordsubMaxprob_dseg.tsv b/atlases/label/Human/atlas-HarvardoxfordsubMaxprob_dseg.tsv new file mode 100644 index 0000000..a1eabe5 --- /dev/null +++ b/atlases/label/Human/atlas-HarvardoxfordsubMaxprob_dseg.tsv @@ -0,0 +1,22 @@ +index label hemisphere +1 Right_Cerebral_White_Matter right +2 Right_Cerebral_Cortex right +3 Right_Lateral_Ventricle right +4 Right_Thalamus right +5 Right_Caudate right +6 Right_Putamen right +7 Right_Pallidum right +8 Brain-Stem bilateral +9 Right_Hippocampus right +10 Right_Amygdala right +11 Right_Accumbens right +12 Left_Cerebral_White_Matter left +13 Left_Cerebral_Cortex left +14 Left_Lateral_Ventricle left +15 Left_Thalamus left +16 Left_Caudate left +17 Left_Putamen left +18 Left_Pallidum left +19 Left_Hippocampus left +20 Left_Amygdala left +21 Left_Accumbens left diff --git a/atlases/label/Human/atlas-Hemisphere_dseg.tsv b/atlases/label/Human/atlas-Hemisphere_dseg.tsv new file mode 100644 index 0000000..853ea51 --- /dev/null +++ b/atlases/label/Human/atlas-Hemisphere_dseg.tsv @@ -0,0 +1,4 @@ +index label hemisphere +0 empty bilateral +1 R_hemisphere right +2 L_hemisphere left diff --git a/atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-1_dseg.json similarity index 59% rename from atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-1_dseg.json index e8380df..a06d32a 100644 --- a/atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Hemispheric", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "3", - "Average Volume Per Region": "2407010.6666666665", - "Year Generated": "2020", - "Generation Method": "", - "Source": "" - }, "rois": { "0": { "label": "empty", @@ -39,5 +27,25 @@ ], "size": 880641 } - } + }, + "Atlasname": "Hemispheric", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "3", + "AverageVolumePerRegion": "2407010.6666666665", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Hemispheric_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Hemispheric_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-2_dseg.json similarity index 59% rename from atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-2_dseg.json index 3e8ef3a..4e4bc0b 100644 --- a/atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Hemispheric", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "3", - "Average Volume Per Region": "300876.3333333333", - "Year Generated": "2020", - "Generation Method": "", - "Source": "" - }, "rois": { "0": { "label": "empty", @@ -39,5 +27,25 @@ ], "size": 111109 } - } + }, + "Atlasname": "Hemispheric", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "3", + "AverageVolumePerRegion": "300876.3333333333", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Hemispheric_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Hemispheric_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-4_dseg.json similarity index 60% rename from atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-4_dseg.json index 33be1db..f643c67 100644 --- a/atlases/label/Human/Metadata-json/Hemispheric_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Hemispheric", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "3", - "Average Volume Per Region": "36450.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "" - }, "rois": { "0": { "label": "empty", @@ -39,5 +27,25 @@ ], "size": 14129 } - } + }, + "Atlasname": "Hemispheric", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "3", + "AverageVolumePerRegion": "36450.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Hemispheric_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Hemispheric_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Hemispheric_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-JHU_dseg.tsv b/atlases/label/Human/atlas-JHU_dseg.tsv new file mode 100644 index 0000000..7ec3343 --- /dev/null +++ b/atlases/label/Human/atlas-JHU_dseg.tsv @@ -0,0 +1,49 @@ +index label hemisphere +1 Middle_Cerebellar_Peduncle bilateral +2 Pontine_Crossing_Tract bilateral +3 Corpus_Callosum_Genu bilateral +4 Body_of_corpus_callosum bilateral +5 Corpus_Callosum_Splenium bilateral +6 Fornix_Column+Body bilateral +7 R_Corticospinal_Tract right +8 L_Corticospinal_Tract left +9 R_Medial_Lemniscus right +10 L_Medial_Lemniscus left +11 R_Inferior_Cerebellar_Peduncle right +12 L_Inferior_Cerebellar_Peduncle left +13 R_Superior_Cerebellar_Peduncle right +14 L_Superior_Cerebellar_Peduncle left +15 R_Cerebral_Peduncle right +16 L_Cerebral_Peduncle left +17 R_Internal_Capsule_Anterior_Limb right +18 L_Internal_Capsule_Anterior_Limb left +19 R_Internal_Capsule_Posterior_Limb right +20 L_Internal_Capsule_Posterior_Limb left +21 R_Internal_Capsule_Retrolenticular_Part right +22 L_Internal_Capsule_Retrolenticular_Part left +23 R_Anterior_Corona_Radiata right +24 L_Anterior_Corona_Radiata left +25 R_Superior_Corona_Radiata right +26 L_Superior_Corona_Radiata left +27 R_Posterior_Corona_Radiata right +28 L_Posterior_Corona_Radiata left +29 R_Posterior_Thalamic+Optic_Radiation right +30 L_Posterior_Thalamic+Optic_Radiation left +31 R_Sagittal_Stratum right +32 L_Sagittal_Stratum left +33 R_External_Capsule right +34 L_External_Capsule left +35 R_Cingulum_(Cingulate_Gyrus) right +36 L_Cingulum_(Cingulate_Gyrus) left +37 R_Cingulum_(Hippocampus) right +38 L_Cingulum_(Hippocampus) left +39 R_Fornix_(Cres)+Stria_Terminalis right +40 L_Fornix_(Cres)+Stria_Terminalis left +41 R_Superior_Longitudinal_Fasciculus right +42 L_Superior_Longitudinal_Fasciculus left +43 R_Superior_Fronto-occipital_Fasciculus right +44 L_Superior_Fronto-occipital_Fasciculus left +45 R_Uncinate_Fasciculus right +46 L_Uncinate_Fasciculus left +47 R_Tapetum right +48 L_Tapetum left diff --git a/atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-1_dseg.json similarity index 95% rename from atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-1_dseg.json index 79a24a4..95dccb3 100644 --- a/atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "JHU", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "48", - "Average Volume Per Region": "3541.7916666666665", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/14645885" - }, "rois": { "0": { "label": "empty", @@ -448,5 +436,25 @@ ], "size": 600 } - } + }, + "Atlasname": "JHU", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "48", + "AverageVolumePerRegion": "3541.7916666666665", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/14645885" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/JHU_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/JHU_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-2_dseg.json similarity index 95% rename from atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-2_dseg.json index e5e7531..6d91e18 100644 --- a/atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "JHU", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "48", - "Average Volume Per Region": "439.9583333333333", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/14645885" - }, "rois": { "0": { "label": "empty", @@ -448,5 +436,25 @@ ], "size": 71 } - } + }, + "Atlasname": "JHU", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "48", + "AverageVolumePerRegion": "439.9583333333333", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/14645885" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/JHU_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/JHU_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-4_dseg.json similarity index 95% rename from atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-4_dseg.json index ad6680b..fa8f57a 100644 --- a/atlases/label/Human/Metadata-json/JHU_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "JHU", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "48", - "Average Volume Per Region": "56.083333333333336", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/14645885" - }, "rois": { "0": { "label": "empty", @@ -448,5 +436,25 @@ ], "size": 9 } - } + }, + "Atlasname": "JHU", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "48", + "AverageVolumePerRegion": "56.083333333333336", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/14645885" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/JHU_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/JHU_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-JHU_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Juelich_dseg.tsv b/atlases/label/Human/atlas-Juelich_dseg.tsv new file mode 100644 index 0000000..e093a62 --- /dev/null +++ b/atlases/label/Human/atlas-Juelich_dseg.tsv @@ -0,0 +1,105 @@ +index label hemisphere +0 empty bilateral +1 L_Anterior_intra-parietal_sulcus_hIP1 left +2 R_Anterior_intra-parietal_sulcus_hIP1 right +3 L_Anterior_intra-parietal_sulcus_hIP2 left +4 R_Anterior_intra-parietal_sulcus_hIP2 right +5 L_Anterior_intra-parietal_sulcus_hIP3 left +6 R_Anterior_intra-parietal_sulcus_hIP3 right +7 L_Amygdala_centromedial_group left +8 R_Amygdala_centromedial_group right +9 L_Amygdala_laterobasal_group left +10 R_Amygdala_laterobasal_group right +11 L_Amygdala_superficial_group left +12 R_Amygdala_superficial_group right +13 L_Broca's_area_BA44 left +14 R_Broca's_area_BA44 right +15 L_Broca's_area_BA45 left +16 R_Broca's_area_BA45 right +17 L_Hippocampus_cornu_ammonis left +18 R_Hippocampus_cornu_ammonis right +19 L_Hippocampus_entorhinal_cortex left +20 R_Hippocampus_entorhinal_cortex right +21 L_Hippocampus_dentate_gyrus left +22 R_Hippocampus_dentate_gyrus right +23 L_Hippocampus_hippocampal-amygdaloid_transition_area left +24 R_Hippocampus_hippocampal-amygdaloid_transition_area right +25 L_Hippocampus_subiculum left +26 R_Hippocampus_subiculum right +27 L_Inferior_parietal_lobule_PF left +28 R_Inferior_parietal_lobule_PF right +29 L_Inferior_parietal_lobule_PFcm left +30 R_Inferior_parietal_lobule_PFcm right +31 L_Inferior_parietal_lobule_PFm left +32 R_Inferior_parietal_lobule_PFm right +33 L_Inferior_parietal_lobule_PFop left +34 R_Inferior_parietal_lobule_PFop right +35 L_Inferior_parietal_lobule_PFt left +36 R_Inferior_parietal_lobule_PFt right +37 L_Inferior_parietal_lobule_Pga left +38 R_Inferior_parietal_lobule_Pga right +39 L_Inferior_parietal_lobule_PGp left +40 R_Inferior_parietal_lobule_PGp right +41 L_Primary_auditory_cortex_TE1.0 left +42 R_Primary_auditory_cortex_TE1.0 right +43 L_Primary_auditory_cortex_TE1.1 left +44 R_Primary_auditory_cortex_TE1.1 right +45 L_Primary_auditory_cortex_TE1.2 left +46 R_Primary_auditory_cortex_TE1.2 right +47 L_Primary_motor_cortex_BA4a left +48 R_Primary_motor_cortex_BA4a right +49 L_Primary_motor_cortex_BA4p left +50 R_Primary_motor_cortex_BA4p right +51 L_Primary_somatosensory_cortex_BA1 left +52 R_Primary_somatosensory_cortex_BA1 right +53 L_Primary_somatosensory_cortex_BA2 left +54 R_Primary_somatosensory_cortex_BA2 right +55 L_Primary_somatosensory_cortex_BA3a left +56 R_Primary_somatosensory_cortex_BA3a right +57 L_Primary_somatosensory_cortex_BA3b left +58 R_Primary_somatosensory_cortex_BA3b right +59 L_Secondary_somatosensory_cortex_Parietal_operculum_OP1 left +60 R_Secondary_somatosensory_cortex_Parietal_operculum_OP1 right +61 L_Secondary_somatosensory_cortex_Parietal_operculum_OP2 left +62 R_Secondary_somatosensory_cortex_Parietal_operculum_OP2 right +63 L_Secondary_somatosensory_cortex_Parietal_operculum_OP3 left +64 R_Secondary_somatosensory_cortex_Parietal_operculum_OP3 right +65 L_Secondary_somatosensory_cortex_Parietal_operculum_OP4 left +66 R_Secondary_somatosensory_cortex_Parietal_operculum_OP4 right +67 L_Superior_parietal_lobule_5Ci left +68 R_Superior_parietal_lobule_5Ci right +69 L_Superior_parietal_lobule_5L left +70 R_Superior_parietal_lobule_5L right +71 L_Superior_parietal_lobule_5M left +72 R_Superior_parietal_lobule_5M right +73 L_Superior_parietal_lobule_7A left +74 R_Superior_parietal_lobule_7A right +75 L_Superior_parietal_lobule_7M left +76 R_Superior_parietal_lobule_7M right +77 L_Superior_parietal_lobule_7PC left +78 R_Superior_parietal_lobule_7PC right +79 L_Superior_parietal_lobule_7P left +80 R_Superior_parietal_lobule_7P right +81 L_Visual_cortex_V1_BA17 left +82 R_Visual_cortex_V1_BA17 right +83 L_Visual_cortex_V2_BA18 left +84 R_Visual_cortex_V2_BA18 right +85 L_Visual_cortex_V3V left +86 R_Visual_cortex_V3V right +87 L_Visual_cortex_V4 left +88 R_Visual_cortex_V4 right +89 L_Visual_cortex_V5 left +90 R_Visual_cortex_V5 right +91 L_Premotor_cortex_BA6 left +92 R_Premotor_cortex_BA6 right +93 R_Lateral_geniculate_body right +94 L_Lateral_geniculate_body left +95 R_Medial_geniculate_body right +96 L_Medial_geniculate_body left +97 L_Insula_Id1 left +98 R_Insula_Id1 right +99 L_Insula_Ig1 left +100 R_Insula_Ig1 right +101 L_Insula_Ig2 left +102 R_Insula_Ig2 right +103 Mamillary_body bilateral diff --git a/atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-1_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-1_dseg.json index db67a06..64b5f01 100644 --- a/atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Juelich", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "104", - "Average Volume Per Region": "69433.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/EAZ05_v18" - }, "rois": { "0": { "label": "empty", @@ -948,5 +936,25 @@ ], "size": 456 } - } + }, + "Atlasname": "Juelich", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "104", + "AverageVolumePerRegion": "69433.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/EAZ05_v18" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Juelich_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Juelich_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-2_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-2_dseg.json index a22d025..f993f66 100644 --- a/atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Juelich", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "104", - "Average Volume Per Region": "8679.125", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/EAZ05_v18" - }, "rois": { "0": { "label": "empty", @@ -948,5 +936,25 @@ ], "size": 57 } - } + }, + "Atlasname": "Juelich", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "104", + "AverageVolumePerRegion": "8679.125", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/EAZ05_v18" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Juelich_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Juelich_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-4_dseg.json similarity index 97% rename from atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-4_dseg.json index 3ee2416..909e71d 100644 --- a/atlases/label/Human/Metadata-json/Juelich_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Juelich", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "yes", - "Symmetrical": "no", - "Number of Regions": "103", - "Average Volume Per Region": "1061.6504854368932", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://scalablebrainatlas.incf.org/human/EAZ05_v18" - }, "rois": { "0": { "label": "empty", @@ -944,5 +932,25 @@ ], "size": 7 } - } + }, + "Atlasname": "Juelich", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "yes", + "Symmetrical": "no", + "NumberOfRegions": "103", + "AverageVolumePerRegion": "1061.6504854368932", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://scalablebrainatlas.incf.org/human/EAZ05_v18" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Juelich_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Juelich_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Juelich_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-1_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-1_dseg.json index bf9e421..da80da8 100644 --- a/atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "MICCAI", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "137", - "Average Volume Per Region": "52708.26277372263", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://www.neuromorphometrics.com/2012_MICCAI_Challenge_Data.html" - }, "rois": { "0": { "label": null, @@ -1245,5 +1233,25 @@ ], "size": 2285 } - } + }, + "Atlasname": "MICCAI", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "137", + "AverageVolumePerRegion": "52708.26277372263", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://www.neuromorphometrics.com/2012_MICCAI_Challenge_Data.html" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/MICCAI_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/MICCAI_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-2_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-2_dseg.json index a57771f..8004817 100644 --- a/atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "MICCAI", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "135", - "Average Volume Per Region": "6686.1407407407405", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://www.neuromorphometrics.com/2012_MICCAI_Challenge_Data.html" - }, "rois": { "0": { "label": null, @@ -1227,5 +1215,25 @@ ], "size": 296 } - } + }, + "Atlasname": "MICCAI", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "135", + "AverageVolumePerRegion": "6686.1407407407405", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://www.neuromorphometrics.com/2012_MICCAI_Challenge_Data.html" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/MICCAI_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/MICCAI_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-4_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-4_dseg.json index a86ba11..157e02a 100644 --- a/atlases/label/Human/Metadata-json/MICCAI_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "MICCAI", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "134", - "Average Volume Per Region": "816.044776119403", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://www.neuromorphometrics.com/2012_MICCAI_Challenge_Data.html" - }, "rois": { "0": { "label": null, @@ -1218,5 +1206,25 @@ ], "size": 39 } - } + }, + "Atlasname": "MICCAI", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "134", + "AverageVolumePerRegion": "816.044776119403", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://www.neuromorphometrics.com/2012_MICCAI_Challenge_Data.html" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/MICCAI_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/MICCAI_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-MICCAI_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Princetonvisual-top_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-1_dseg.json similarity index 95% rename from atlases/label/Human/Metadata-json/Princetonvisual-top_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-1_dseg.json index 69201e7..e0a786a 100644 --- a/atlases/label/Human/Metadata-json/Princetonvisual-top_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Princetonfisual-top", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "50", - "Average Volume Per Region": "144420.64", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585523/" - }, "rois": { "0": { "label": "null", @@ -462,5 +450,25 @@ ], "size": 31 } - } + }, + "Atlasname": "Princetonfisual-top", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "50", + "AverageVolumePerRegion": "144420.64", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585523/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Princetonvisual-top_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Princetonvisual-top_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Princetonvisual-top_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-2_dseg.json similarity index 95% rename from atlases/label/Human/Metadata-json/Princetonvisual-top_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-2_dseg.json index 1771f39..fced98c 100644 --- a/atlases/label/Human/Metadata-json/Princetonvisual-top_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Princetonfisual-top", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "no", - "Number of Regions": "49", - "Average Volume Per Region": "18421.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585523/" - }, "rois": { "0": { "label": "null", @@ -458,5 +446,25 @@ ], "size": 4 } - } + }, + "Atlasname": "Princetonfisual-top", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "no", + "NumberOfRegions": "49", + "AverageVolumePerRegion": "18421.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585523/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Princetonvisual-top_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Princetonvisual-top_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Princetonvisual-top_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Princetonvisual-top_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-PrincetonvisualTop_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Princetonvisual_dseg.tsv b/atlases/label/Human/atlas-Princetonvisual_dseg.tsv new file mode 100644 index 0000000..733e57b --- /dev/null +++ b/atlases/label/Human/atlas-Princetonvisual_dseg.tsv @@ -0,0 +1,50 @@ +index label hemisphere +1 L_V1v left +2 L_V1d left +3 L_V2v left +4 L_V2d left +5 L_V3v left +6 L_V3d left +7 L_hV4 left +8 L_VO1 left +9 L_VO2 left +10 L_PHC1 left +11 L_PHC2 left +12 L_MST left +13 L_hMT left +14 L_LO2 left +15 L_LO1 left +16 L_V3b left +17 L_V3a left +18 L_IPS0 left +19 L_IPS1 left +20 L_IPS2 left +21 L_IPS3 left +22 L_IPS4 left +23 L_SPL1 left +24 L_FEF left +25 R_V1v right +26 R_V1d right +27 R_V2v right +28 R_V2d right +29 R_V3v right +30 R_V3d right +31 R_hV4 right +32 R_VO1 right +33 R_VO2 right +34 R_PHC1 right +35 R_PHC2 right +36 R_MST right +37 R_hMT right +38 R_LO2 right +39 R_LO1 right +40 R_V3b right +41 R_V3a right +42 R_IPS0 right +43 R_IPS1 right +44 R_IPS2 right +45 R_IPS3 right +46 R_IPS4 right +47 R_IPS5 right +48 R_SPL1 right +49 R_FEF right diff --git a/atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-1_dseg.json index 5cd003a..d0e738f 100644 --- a/atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer1000", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1001", - "Average Volume Per Region": "7213.818181818182", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -9021,5 +9009,25 @@ ], "size": 557 } - } + }, + "Atlasname": "Schaefer1000", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1001", + "AverageVolumePerRegion": "7213.818181818182", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-2_dseg.json index caeefab..8dd277b 100644 --- a/atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer1000", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1001", - "Average Volume Per Region": "901.7272727272727", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -9021,5 +9009,25 @@ ], "size": 71 } - } + }, + "Atlasname": "Schaefer1000", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1001", + "AverageVolumePerRegion": "901.7272727272727", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-4_dseg.json index b2661c5..91b3742 100644 --- a/atlases/label/Human/Metadata-json/Schaefer1000_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer1000", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1001", - "Average Volume Per Region": "109.24075924075925", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -9021,5 +9009,25 @@ ], "size": 8 } - } + }, + "Atlasname": "Schaefer1000", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1001", + "AverageVolumePerRegion": "109.24075924075925", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer1000_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Schaefer1000_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-1_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-1_dseg.json index 6f6f11b..a273283 100644 --- a/atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer200", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "201", - "Average Volume Per Region": "35925.532338308454", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -1821,5 +1809,25 @@ ], "size": 4547 } - } + }, + "Atlasname": "Schaefer200", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "201", + "AverageVolumePerRegion": "35925.532338308454", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer200_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer200_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-2_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-2_dseg.json index f205c15..48daf9f 100644 --- a/atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer200", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "201", - "Average Volume Per Region": "4490.691542288557", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -1821,5 +1809,25 @@ ], "size": 570 } - } + }, + "Atlasname": "Schaefer200", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "201", + "AverageVolumePerRegion": "4490.691542288557", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer200_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer200_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-4_dseg.json similarity index 98% rename from atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-4_dseg.json index 09cbf93..92655a7 100644 --- a/atlases/label/Human/Metadata-json/Schaefer200_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer200", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "201", - "Average Volume Per Region": "544.0298507462686", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -1821,5 +1809,25 @@ ], "size": 70 } - } + }, + "Atlasname": "Schaefer200", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "201", + "AverageVolumePerRegion": "544.0298507462686", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer200_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer200_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Schaefer200_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-1_dseg.json index d5a6f41..f79d289 100644 --- a/atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer300", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "301", - "Average Volume Per Region": "23990.13953488372", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -2721,5 +2709,25 @@ ], "size": 1926 } - } + }, + "Atlasname": "Schaefer300", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "301", + "AverageVolumePerRegion": "23990.13953488372", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer300_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer300_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-2_dseg.json index 9ffcf14..d77e9ff 100644 --- a/atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer300", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "301", - "Average Volume Per Region": "2998.767441860465", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -2721,5 +2709,25 @@ ], "size": 232 } - } + }, + "Atlasname": "Schaefer300", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "301", + "AverageVolumePerRegion": "2998.767441860465", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer300_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer300_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-4_dseg.json index c5b5537..848e610 100644 --- a/atlases/label/Human/Metadata-json/Schaefer300_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer300", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "301", - "Average Volume Per Region": "363.2890365448505", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -2721,5 +2709,25 @@ ], "size": 31 } - } + }, + "Atlasname": "Schaefer300", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "301", + "AverageVolumePerRegion": "363.2890365448505", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer300_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer300_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Schaefer300_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-1_dseg.json index e3f3524..30cdf05 100644 --- a/atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer400", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "401", - "Average Volume Per Region": "18007.561097256857", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -3621,5 +3609,25 @@ ], "size": 1991 } - } + }, + "Atlasname": "Schaefer400", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "401", + "AverageVolumePerRegion": "18007.561097256857", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer400_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer400_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-2_dseg.json index bfd2710..5688963 100644 --- a/atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer400", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "401", - "Average Volume Per Region": "2250.945137157107", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -3621,5 +3609,25 @@ ], "size": 241 } - } + }, + "Atlasname": "Schaefer400", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "401", + "AverageVolumePerRegion": "2250.945137157107", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer400_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer400_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-4_dseg.json index 8d4ac1c..5bc0516 100644 --- a/atlases/label/Human/Metadata-json/Schaefer400_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Schaefer400", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "401", - "Average Volume Per Region": "272.6932668329177", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -3621,5 +3609,25 @@ ], "size": 30 } - } + }, + "Atlasname": "Schaefer400", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "401", + "AverageVolumePerRegion": "272.6932668329177", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Schaefer400_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Schaefer400_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Schaefer400_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-1_dseg.json index c27de90..5834ece 100644 --- a/atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Slab1068", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1069", - "Average Volume Per Region": "6754.941066417212", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -9633,5 +9621,25 @@ ], "size": 297 } - } + }, + "Atlasname": "Slab1068", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1069", + "AverageVolumePerRegion": "6754.941066417212", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Slab1068_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Slab1068_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-2_dseg.json index b069d2c..7bf0aa4 100644 --- a/atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Slab1068", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1069", - "Average Volume Per Region": "844.3676333021515", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -9633,5 +9621,25 @@ ], "size": 36 } - } + }, + "Atlasname": "Slab1068", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1069", + "AverageVolumePerRegion": "844.3676333021515", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Slab1068_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Slab1068_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-4_dseg.json index 7724abe..01bc789 100644 --- a/atlases/label/Human/Metadata-json/Slab1068_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Slab1068", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1069", - "Average Volume Per Region": "102.29186155285313", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -9633,5 +9621,25 @@ ], "size": 7 } - } + }, + "Atlasname": "Slab1068", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1069", + "AverageVolumePerRegion": "102.29186155285313", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Slab1068_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Slab1068_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Slab1068_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-1_dseg.json index f87eca7..a3f6dbd 100644 --- a/atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Slab907", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "908", - "Average Volume Per Region": "7952.678414096917", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -8184,5 +8172,25 @@ ], "size": 243 } - } + }, + "Atlasname": "Slab907", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "908", + "AverageVolumePerRegion": "7952.678414096917", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Slab907_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Slab907_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-2_dseg.json index b2b3f33..b406d34 100644 --- a/atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Slab907", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "908", - "Average Volume Per Region": "994.0848017621146", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -8184,5 +8172,25 @@ ], "size": 23 } - } + }, + "Atlasname": "Slab907", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "908", + "AverageVolumePerRegion": "994.0848017621146", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Slab907_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Slab907_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-4_dseg.json index 8ea04ac..dcf7fe1 100644 --- a/atlases/label/Human/Metadata-json/Slab907_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Slab907", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "908", - "Average Volume Per Region": "120.4295154185022", - "Year Generated": "2020", - "Generation Method": "", - "Source": "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" - }, "rois": { "0": { "label": null, @@ -8184,5 +8172,25 @@ ], "size": 3 } - } + }, + "Atlasname": "Slab907", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "908", + "AverageVolumePerRegion": "120.4295154185022", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Slab907_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Slab907_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Slab907_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-1_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-1_dseg.json index c665ee0..c6262cf 100644 --- a/atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Talairach", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "1106", - "Average Volume Per Region": "6528.962025316456", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/7008525" - }, "rois": { "0": { "label": null, @@ -9966,5 +9954,25 @@ ], "size": 103 } - } + }, + "Atlasname": "Talairach", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "1106", + "AverageVolumePerRegion": "6528.962025316456", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/7008525" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Talairach_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Talairach_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-2_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-2_dseg.json index 170a81f..78e1536 100644 --- a/atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Talairach", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "960", - "Average Volume Per Region": "940.2385416666667", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/7008525" - }, "rois": { "0": { "label": null, @@ -8652,5 +8640,25 @@ ], "size": 12 } - } + }, + "Atlasname": "Talairach", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "960", + "AverageVolumePerRegion": "940.2385416666667", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/7008525" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Talairach_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Talairach_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-4_dseg.json similarity index 99% rename from atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-4_dseg.json index bbb3abd..7ffa2ea 100644 --- a/atlases/label/Human/Metadata-json/Talairach_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Talairach", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "", - "Symmetrical": "no", - "Number of Regions": "745", - "Average Volume Per Region": "146.7785234899329", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pubmed/7008525" - }, "rois": { "0": { "label": null, @@ -6717,5 +6705,25 @@ ], "size": 1 } - } + }, + "Atlasname": "Talairach", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "", + "Symmetrical": "no", + "NumberOfRegions": "745", + "AverageVolumePerRegion": "146.7785234899329", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pubmed/7008525" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Talairach_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Talairach_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Talairach_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Tissue_dseg.tsv b/atlases/label/Human/atlas-Tissue_dseg.tsv new file mode 100644 index 0000000..834065d --- /dev/null +++ b/atlases/label/Human/atlas-Tissue_dseg.tsv @@ -0,0 +1,5 @@ +index label hemisphere +0 null+csf bilateral +1 Gray_Matter bilateral +2 Gray_Matter_White_Matter_Boundary bilateral +3 White_Matter bilateral diff --git a/atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-1_dseg.json similarity index 67% rename from atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-1_dseg.json index df6ef84..a2f008c 100644 --- a/atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Tissue", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "4", - "Average Volume Per Region": "1805258.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "" - }, "rois": { "0": { "label": "null+csf", @@ -48,5 +36,25 @@ ], "size": 616095 } - } + }, + "Atlasname": "Tissue", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "4", + "AverageVolumePerRegion": "1805258.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Tissue_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Tissue_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-2_dseg.json similarity index 67% rename from atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-2_dseg.json index 1fbb322..e3e134c 100644 --- a/atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Tissue", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "4", - "Average Volume Per Region": "225657.25", - "Year Generated": "2020", - "Generation Method": "", - "Source": "" - }, "rois": { "0": { "label": "null+csf", @@ -48,5 +36,25 @@ ], "size": 77016 } - } + }, + "Atlasname": "Tissue", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "4", + "AverageVolumePerRegion": "225657.25", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Tissue_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Tissue_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-4_dseg.json similarity index 67% rename from atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-4_dseg.json index da9f9a4..f28a434 100644 --- a/atlases/label/Human/Metadata-json/Tissue_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Tissue", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "4", - "Average Volume Per Region": "27337.5", - "Year Generated": "2020", - "Generation Method": "", - "Source": "" - }, "rois": { "0": { "label": "null+csf", @@ -48,5 +36,25 @@ ], "size": 9635 } - } + }, + "Atlasname": "Tissue", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "4", + "AverageVolumePerRegion": "27337.5", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Tissue_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Tissue_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Tissue_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Yeo17_dseg.tsv b/atlases/label/Human/atlas-Yeo17_dseg.tsv new file mode 100644 index 0000000..f7dbce2 --- /dev/null +++ b/atlases/label/Human/atlas-Yeo17_dseg.tsv @@ -0,0 +1,19 @@ +index label hemisphere +0 empty bilateral +1 1_Visual_A bilateral +2 2_Visual_B bilateral +3 3_Somatomotor_A bilateral +4 4_Somatomotor_B bilateral +5 5_Temporal_Parietal bilateral +6 6_Frontoparietal_Area bilateral +7 7_Dorsal_Attention_B bilateral +8 8_Salience+Ventral_Attention_A bilateral +9 9_Salience+Ventral_Attention_B bilateral +10 10_Control_A bilateral +11 11_Control_B bilateral +12 12_Control_C bilateral +13 13_Default_A bilateral +14 14_Default_B bilateral +15 15_Default_C bilateral +16 16_Limbic_A bilateral +17 17_Limbic_B bilateral diff --git a/atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_desc-liberal_dseg.json similarity index 88% rename from atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_desc-liberal_dseg.json index 4409746..2364d33 100644 --- a/atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_desc-liberal_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-17 liberal", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "18", - "Average Volume Per Region": "401168.44444444444", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -174,5 +162,25 @@ ], "size": 100765 } - } + }, + "Atlasname": "Yeo-17 liberal", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "18", + "AverageVolumePerRegion": "401168.44444444444", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-17-liberal_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_desc-liberal_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-17-liberal_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_desc-liberal_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_dseg.json similarity index 88% rename from atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_dseg.json index 9c5f40a..c3ce232 100644 --- a/atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-17", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "18", - "Average Volume Per Region": "401168.44444444444", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -174,5 +162,25 @@ ], "size": 58462 } - } + }, + "Atlasname": "Yeo-17", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "18", + "AverageVolumePerRegion": "401168.44444444444", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-17_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-17_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_desc-liberal_dseg.json similarity index 88% rename from atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_desc-liberal_dseg.json index 04cdd60..185cbe7 100644 --- a/atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_desc-liberal_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-17 liberal", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "18", - "Average Volume Per Region": "50146.055555555555", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -174,5 +162,25 @@ ], "size": 12672 } - } + }, + "Atlasname": "Yeo-17 liberal", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "18", + "AverageVolumePerRegion": "50146.055555555555", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-17-liberal_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_desc-liberal_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-17-liberal_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_desc-liberal_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_dseg.json similarity index 88% rename from atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_dseg.json index 2f5c113..9ebabb8 100644 --- a/atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-17", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "18", - "Average Volume Per Region": "50146.055555555555", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -174,5 +162,25 @@ ], "size": 7358 } - } + }, + "Atlasname": "Yeo-17", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "18", + "AverageVolumePerRegion": "50146.055555555555", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-17_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-17_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_desc-liberal_dseg.json similarity index 88% rename from atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_desc-liberal_dseg.json index d9a43e9..1ba1180 100644 --- a/atlases/label/Human/Metadata-json/Yeo-17-liberal_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_desc-liberal_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-17 liberal", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "18", - "Average Volume Per Region": "6075.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -174,5 +162,25 @@ ], "size": 1572 } - } + }, + "Atlasname": "Yeo-17 liberal", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "18", + "AverageVolumePerRegion": "6075.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-17-liberal_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_desc-liberal_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-17-liberal_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_desc-liberal_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_dseg.json similarity index 89% rename from atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_dseg.json index e462f8a..35cc3fb 100644 --- a/atlases/label/Human/Metadata-json/Yeo-17_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-17", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "18", - "Average Volume Per Region": "6075.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -174,5 +162,25 @@ ], "size": 913 } - } + }, + "Atlasname": "Yeo-17", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "18", + "AverageVolumePerRegion": "6075.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-17_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-17_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Yeo17_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/label/Human/atlas-Yeo7_desc-liberal_dseg.tsv b/atlases/label/Human/atlas-Yeo7_desc-liberal_dseg.tsv new file mode 100644 index 0000000..953ad1f --- /dev/null +++ b/atlases/label/Human/atlas-Yeo7_desc-liberal_dseg.tsv @@ -0,0 +1,9 @@ +index label hemisphere +0 empty bilateral +1 1_Visual_Area bilateral +2 2_Somatomotor_Area bilateral +3 3_Dorsal_Area bilateral +4 4_Ventral_Area bilateral +5 5_Lymbic_Area bilateral +6 6_Frontoparietal_Area bilateral +7 7_Default_Network_Area bilateral diff --git a/atlases/label/Human/atlas-Yeo7_dseg.tsv b/atlases/label/Human/atlas-Yeo7_dseg.tsv new file mode 100644 index 0000000..953ad1f --- /dev/null +++ b/atlases/label/Human/atlas-Yeo7_dseg.tsv @@ -0,0 +1,9 @@ +index label hemisphere +0 empty bilateral +1 1_Visual_Area bilateral +2 2_Somatomotor_Area bilateral +3 3_Dorsal_Area bilateral +4 4_Ventral_Area bilateral +5 5_Lymbic_Area bilateral +6 6_Frontoparietal_Area bilateral +7 7_Default_Network_Area bilateral diff --git a/atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_desc-liberal_dseg.json similarity index 78% rename from atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_desc-liberal_dseg.json index 124adca..f80be66 100644 --- a/atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_desc-liberal_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-7 liberal", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "8", - "Average Volume Per Region": "902629.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -84,5 +72,25 @@ ], "size": 240978 } - } + }, + "Atlasname": "Yeo-7 liberal", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "8", + "AverageVolumePerRegion": "902629.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_desc-liberal_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_desc-liberal_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-1x1x1.json b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_dseg.json similarity index 78% rename from atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-1x1x1.json rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_dseg.json index 210b3bb..b7db89a 100644 --- a/atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-1x1x1.json +++ b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-7", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "8", - "Average Volume Per Region": "902629.0", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -84,5 +72,25 @@ ], "size": 135223 } - } + }, + "Atlasname": "Yeo-7", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "8", + "AverageVolumePerRegion": "902629.0", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[1, 1, 1] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-1_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_desc-liberal_dseg.json similarity index 78% rename from atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_desc-liberal_dseg.json index 5dbd305..fe5e8ce 100644 --- a/atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_desc-liberal_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-7 liberal", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "8", - "Average Volume Per Region": "112828.625", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -84,5 +72,25 @@ ], "size": 30127 } - } + }, + "Atlasname": "Yeo-7 liberal", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "8", + "AverageVolumePerRegion": "112828.625", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-7-liberal_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_desc-liberal_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-7-liberal_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_desc-liberal_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-2x2x2.json b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_dseg.json similarity index 78% rename from atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-2x2x2.json rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_dseg.json index b1ad0e9..baa5d5b 100644 --- a/atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-2x2x2.json +++ b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-7", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "8", - "Average Volume Per Region": "112828.625", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -84,5 +72,25 @@ ], "size": 16853 } - } + }, + "Atlasname": "Yeo-7", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "8", + "AverageVolumePerRegion": "112828.625", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[2, 2, 2] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-7_space-MNI152NLin6_res-2x2x2.nii.gz b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-7_space-MNI152NLin6_res-2x2x2.nii.gz rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-2_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_desc-liberal_dseg.json similarity index 78% rename from atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_desc-liberal_dseg.json index 1c0ba28..b87946d 100644 --- a/atlases/label/Human/Metadata-json/Yeo-7-liberal_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_desc-liberal_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-7 liberal", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "8", - "Average Volume Per Region": "13668.75", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -84,5 +72,25 @@ ], "size": 3758 } - } + }, + "Atlasname": "Yeo-7 liberal", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "8", + "AverageVolumePerRegion": "13668.75", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-7-liberal_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_desc-liberal_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-7-liberal_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_desc-liberal_dseg.nii.gz diff --git a/atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-4x4x4.json b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_dseg.json similarity index 78% rename from atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-4x4x4.json rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_dseg.json index 3eea460..017dad8 100644 --- a/atlases/label/Human/Metadata-json/Yeo-7_space-MNI152NLin6_res-4x4x4.json +++ b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_dseg.json @@ -1,16 +1,4 @@ { - "MetaData": { - "AtlasName": "Yeo-7", - "Description": "", - "Native Coordinate Space": "", - "Hierarchical": "no", - "Symmetrical": "yes", - "Number of Regions": "8", - "Average Volume Per Region": "13668.75", - "Year Generated": "2020", - "Generation Method": "", - "Source": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" - }, "rois": { "0": { "label": "empty", @@ -84,5 +72,25 @@ ], "size": 2071 } - } + }, + "Atlasname": "Yeo-7", + "Description": "", + "NativeCoordinateSpace": "", + "Hierarchical": "no", + "Symmetrical": "yes", + "NumberOfRegions": "8", + "AverageVolumePerRegion": "13668.75", + "YearGenerated": "2020", + "GenerationMethod": "", + "ReferencesAndLinks": [ + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/" + ], + "Space": "MNI152NLin6", + "BIDSVersion": "1.8.0", + "Authors": [ + "", + "" + ], + "Species": "Homo sapiens", + "Resolution": "[4, 4, 4] mm" } \ No newline at end of file diff --git a/atlases/label/Human/Yeo-7_space-MNI152NLin6_res-4x4x4.nii.gz b/atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_dseg.nii.gz similarity index 100% rename from atlases/label/Human/Yeo-7_space-MNI152NLin6_res-4x4x4.nii.gz rename to atlases/label/Human/atlas-Yeo7_space-MNI152NLin6_res-4_dseg.nii.gz diff --git a/atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_variant-lateral-ventricles_res-1x1x1_descr-brainmask.nii.gz b/atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_res-1_desc-brainVariantLateralVentricles_mask.nii.gz similarity index 100% rename from atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_variant-lateral-ventricles_res-1x1x1_descr-brainmask.nii.gz rename to atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_res-1_desc-brainVariantLateralVentricles_mask.nii.gz diff --git a/atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_variant-lateral-ventricles_res-2x2x2_descr-brainmask.nii.gz b/atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_res-2_desc-brainVariantLateralVentricles_mask.nii.gz similarity index 100% rename from atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_variant-lateral-ventricles_res-2x2x2_descr-brainmask.nii.gz rename to atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_res-2_desc-brainVariantLateralVentricles_mask.nii.gz diff --git a/atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_variant-lateral-ventricles_res-4x4x4_descr-brainmask.nii.gz b/atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_res-4_desc-brainVariantLateralVentricles_mask.nii.gz similarity index 100% rename from atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_variant-lateral-ventricles_res-4x4x4_descr-brainmask.nii.gz rename to atlases/mask/HarvardOxford-thr25_space-MNI152NLin6_res-4_desc-brainVariantLateralVentricles_mask.nii.gz diff --git a/atlases/mask/CorpusCallosum_res_1mm.nii.gz b/atlases/mask/res-1mm_desc-CorpusCallosum_mask.nii.gz similarity index 100% rename from atlases/mask/CorpusCallosum_res_1mm.nii.gz rename to atlases/mask/res-1mm_desc-CorpusCallosum_mask.nii.gz diff --git a/atlases/mask/CorpusCallosum_res_2mm.nii.gz b/atlases/mask/res-2mm_desc-CorpusCallosum_mask.nii.gz similarity index 100% rename from atlases/mask/CorpusCallosum_res_2mm.nii.gz rename to atlases/mask/res-2mm_desc-CorpusCallosum_mask.nii.gz diff --git a/atlases/mask/CorpusCallosum_res_4mm.nii.gz b/atlases/mask/res-4mm_desc-CorpusCallosum_mask.nii.gz similarity index 100% rename from atlases/mask/CorpusCallosum_res_4mm.nii.gz rename to atlases/mask/res-4mm_desc-CorpusCallosum_mask.nii.gz diff --git a/atlases/mask/MNI152NLin6_res-1x1x1_T1w_descr-brainmask.nii.gz b/atlases/mask/space-MNI152NLin6_res-1T1w_desc-brain_mask.nii.gz similarity index 100% rename from atlases/mask/MNI152NLin6_res-1x1x1_T1w_descr-brainmask.nii.gz rename to atlases/mask/space-MNI152NLin6_res-1T1w_desc-brain_mask.nii.gz diff --git a/atlases/mask/MNI152NLin6_res-2x2x2_T1w_descr-brainmask.nii.gz b/atlases/mask/space-MNI152NLin6_res-2T1w_desc-brain_mask.nii.gz similarity index 100% rename from atlases/mask/MNI152NLin6_res-2x2x2_T1w_descr-brainmask.nii.gz rename to atlases/mask/space-MNI152NLin6_res-2T1w_desc-brain_mask.nii.gz diff --git a/atlases/mask/MNI152NLin6_res-4x4x4_T1w_descr-brainmask.nii.gz b/atlases/mask/space-MNI152NLin6_res-4T1w_desc-brain_mask.nii.gz similarity index 100% rename from atlases/mask/MNI152NLin6_res-4x4x4_T1w_descr-brainmask.nii.gz rename to atlases/mask/space-MNI152NLin6_res-4T1w_desc-brain_mask.nii.gz diff --git a/atlases/qqqatlas_spec.md b/atlases/qqqatlas_spec.md index 24af341..18c4a6a 100644 --- a/atlases/qqqatlas_spec.md +++ b/atlases/qqqatlas_spec.md @@ -21,7 +21,8 @@ Must be in the NIFTI format and capable of being opened by any standard MRI view ## File 2: Atlas Information File Name: `-regions-1x1x1.json` -``` + +```json { "MetaData": { "AtlasName": {Name}, @@ -46,6 +47,7 @@ File Name: `-regions-1x1x1.json` ... } } +``` Fields (all required unless specified): - Region diff --git a/atlases/reference_brains/FSL_HCP1065_FA_2mm.nii.gz b/atlases/reference_brains/atlas-FSL_HCP1065_FA_2mm.nii.gz similarity index 100% rename from atlases/reference_brains/FSL_HCP1065_FA_2mm.nii.gz rename to atlases/reference_brains/atlas-FSL_HCP1065_FA_2mm.nii.gz diff --git a/atlases/reference_brains/MNI152NLin6_res-1x1x1_T1w.nii.gz b/atlases/reference_brains/atlas-MNI152NLin6_res-1_T1w.nii.gz similarity index 100% rename from atlases/reference_brains/MNI152NLin6_res-1x1x1_T1w.nii.gz rename to atlases/reference_brains/atlas-MNI152NLin6_res-1_T1w.nii.gz diff --git a/atlases/reference_brains/MNI152NLin6_res-1x1x1_T1w_descr-brain.nii.gz b/atlases/reference_brains/atlas-MNI152NLin6_res-1_desc-brain_T1w.nii.gz similarity index 100% rename from atlases/reference_brains/MNI152NLin6_res-1x1x1_T1w_descr-brain.nii.gz rename to atlases/reference_brains/atlas-MNI152NLin6_res-1_desc-brain_T1w.nii.gz diff --git a/atlases/reference_brains/MNI152NLin6_res-2x2x2_T1w.nii.gz b/atlases/reference_brains/atlas-MNI152NLin6_res-2_T1w.nii.gz similarity index 100% rename from atlases/reference_brains/MNI152NLin6_res-2x2x2_T1w.nii.gz rename to atlases/reference_brains/atlas-MNI152NLin6_res-2_T1w.nii.gz diff --git a/atlases/reference_brains/MNI152NLin6_res-2x2x2_T1w_descr-brain.nii.gz b/atlases/reference_brains/atlas-MNI152NLin6_res-2_desc-brain_T1w.nii.gz similarity index 100% rename from atlases/reference_brains/MNI152NLin6_res-2x2x2_T1w_descr-brain.nii.gz rename to atlases/reference_brains/atlas-MNI152NLin6_res-2_desc-brain_T1w.nii.gz diff --git a/atlases/reference_brains/MNI152NLin6_res-4x4x4_T1w.nii.gz b/atlases/reference_brains/atlas-MNI152NLin6_res-4_T1w.nii.gz similarity index 100% rename from atlases/reference_brains/MNI152NLin6_res-4x4x4_T1w.nii.gz rename to atlases/reference_brains/atlas-MNI152NLin6_res-4_T1w.nii.gz diff --git a/atlases/reference_brains/MNI152NLin6_res-4x4x4_T1w_descr-brain.nii.gz b/atlases/reference_brains/atlas-MNI152NLin6_res-4_desc-brain_T1w.nii.gz similarity index 100% rename from atlases/reference_brains/MNI152NLin6_res-4x4x4_T1w_descr-brain.nii.gz rename to atlases/reference_brains/atlas-MNI152NLin6_res-4_desc-brain_T1w.nii.gz diff --git a/atlases/reference_brains/MNI152_T1_4mm_symmetric.nii.gz b/atlases/reference_brains/atlas-MNI152_res-4_desc-symmetric_T1w.nii.gz similarity index 100% rename from atlases/reference_brains/MNI152_T1_4mm_symmetric.nii.gz rename to atlases/reference_brains/atlas-MNI152_res-4_desc-symmetric_T1w.nii.gz diff --git a/clean_up_json.py b/clean_up_json.py new file mode 100644 index 0000000..a5a0766 --- /dev/null +++ b/clean_up_json.py @@ -0,0 +1,48 @@ +from pathlib import Path +from rich import print +import pandas as pd +import json + +RENAME = True + +root_dir = Path(__file__).parent + +output_dir = root_dir / "atlases" / "label" / "Human" + +json_files = output_dir.glob("*.json") + +for file in json_files: + + print(file) + + resolution = [x.split("-")[1] for x in file.stem.split("_") if x.startswith("res")][0] + + with open(file) as f: + content = json.load(f) + + for key in content["MetaData"]: + if key == "AtlasName": + new_key = "Name" + if key == "Source": + new_key = "ReferencesAndLinks" + else: + new_key = "".join([x.capitalize() for x in key.split(" ")]) + + if new_key == "ReferencesAndLinks": + content[new_key] = [content["MetaData"][key]] + else: + content[new_key] = content["MetaData"][key] + + content["Space"] = "MNI152NLin6" + content["BIDSVersion"] = "1.8.0" + content["Authors"] = ["", ""] + content["Species"] = "Homo sapiens" + content["Resolution"] = f"[{resolution}, {resolution}, {resolution}] mm" + + content.pop("MetaData") + + # print(content) + + if RENAME: + with open(file, 'w') as f: + json.dump(content, f, indent=" ") diff --git a/rename.py b/rename.py new file mode 100644 index 0000000..b3959c4 --- /dev/null +++ b/rename.py @@ -0,0 +1,126 @@ +from pathlib import Path +from rich import print +import pandas as pd + +RENAME = True + +root_dir = Path(__file__).parent + +output_dir = root_dir / "atlases" / "label" / "Human" + +def rename_json(): + + json_files = (output_dir / "Metadata-json").glob("*.json") + + for file in json_files: + + filename = file.name + + atlas_name = filename.split("_")[0].split("-") + atlas_name = camel_case_atlas_name(atlas_name) + + other_entities = "_".join(file.stem.split("_")[1:]) + + other_entities = simplify_res(other_entities) + + other_entities = rm_all_label_in_filename(other_entities) + + desc = return_desc_entity(filename) + + new_filename = f"atlas-{atlas_name}_{other_entities}{desc}_dseg.json" + + print(f"{filename} -> {new_filename}") + + if RENAME: + file.rename(output_dir / new_filename) + +def rename_nii(): + nii_files = (output_dir).glob("*.nii.gz") + for file in nii_files: + + filename = file.name.replace("_dseg.nii.gz", "") + + atlas_name = filename.split("_")[0].split("-")[1:] + atlas_name = camel_case_atlas_name(atlas_name) + + other_entities = "_".join(filename.split("_")[1:]) + + other_entities = simplify_res(other_entities) + + other_entities = rm_all_label_in_filename(other_entities) + + desc = return_desc_entity(filename) + + new_filename = f"atlas-{atlas_name}_{other_entities}{desc}_dseg.nii.gz" + + if filename != new_filename: + print(f"{filename}_dseg.nii.gz -> {new_filename}") + + if RENAME: + file.rename(output_dir / new_filename) + +def return_desc_entity(filename): + desc_label = "" + if "liberal" in filename: + desc_label += "liberal" + + if "label_all" in filename: + desc_label = "labelAll" + + desc = f"_desc-{desc_label}" if desc_label else "" + return desc + +def camel_case_atlas_name(atlas_name): + if len(atlas_name) > 1: + atlas_name = "".join([x.capitalize() for x in atlas_name if x != "liberal"]) + else: + atlas_name = atlas_name[0] + return atlas_name + + +def rename_csv(): + + csv_files = (output_dir / "Anatomical-labels-csv").glob("*.csv") + for file in csv_files: + + desc = return_desc_entity(file.stem) + + filename = file.stem.split("-") + filename = camel_case_atlas_name(filename) + + df = pd.read_csv(file, names=["index", "label"]) + df = df.dropna() + print(df) + + new_filename = f"atlas-{filename}{desc}_dseg.tsv" + + if filename != new_filename: + print(f"{filename}.csv -> {new_filename}") + if RENAME: + df.to_csv(output_dir / new_filename, sep="\t", index=False) + file.unlink() + + + +def simplify_res(filename): + if "res-1x1x1" in filename: + filename = filename.replace("res-1x1x1", "res-1") + if "res-2x2x2" in filename: + filename = filename.replace("res-2x2x2", "res-2") + if "res-4x4x4" in filename: + filename = filename.replace("res-4x4x4", "res-4") + return filename + +def rm_all_label_in_filename(filename): + if "label_all" in filename: + filename = filename.replace("_label_all", "") + return filename + + +def main(): + rename_json() + rename_nii() + rename_csv() + +if __name__ == "__main__": + main() \ No newline at end of file diff --git a/tests/bids_parse.m b/tests/bids_parse.m new file mode 100644 index 0000000..5770546 --- /dev/null +++ b/tests/bids_parse.m @@ -0,0 +1,32 @@ +% test script to ensure that all files are BIDS friendly enough to be parsed by BIDS-matlab + +this_dir = fileparts(mfilename('fullpath')); + +label_folder = fullfile(this_dir, '..', 'atlases', 'label', 'Human'); + +reference_folder = fullfile(this_dir, '..', 'atlases', 'reference_brains'); + +mask_folder = fullfile(this_dir, '..', 'atlases', 'mask'); + +test_folder(label_folder); +test_folder(reference_folder); +test_folder(mask_folder); + +%% + +function test_folder(folder) + files = bids.internal.file_utils('FPList', folder, '^*.nii.gz'); + + for i = 1:size(files, 1) + + this_file = deblank(files(i, :)); + + try + bids.File(this_file, 'tolerant', false, 'verbose', true); + catch + fprintf(1, '%s is not BIDS friendly\n', ... + bids.internal.file_utils(this_file, 'filename')); + end + + end +end diff --git a/tests/bids_parse.m~ b/tests/bids_parse.m~ new file mode 100644 index 0000000..cf14d39 --- /dev/null +++ b/tests/bids_parse.m~ @@ -0,0 +1,23 @@ +% test script to ensure that all files are BIDS friendly enough to be parsed by BIDS-matlab + +this_dir = fileparts(mfilename('fullpath')); + +label_folder = fullfile(this_dir, '..', 'atlases', 'label', 'Human'); + + + +function test_folder(folder) + files = bids.internal.file_utils('FPList', label_folder, '^*.nii.gz'); + + for i = 1:size(files, 1) + + this_file = deblank(files(i, :)); + + try + bids.File(this_file, 'tolerant', false, 'verbose', true); + catch + fprintf(1, '%s is not BIDS friendly\n', bids.internal.file_utils(this_file, 'filename')); + end + + end +end \ No newline at end of file