diff --git a/pkgdown.yml b/pkgdown.yml
index c1dcf00..7cdcd3c 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -4,5 +4,5 @@ pkgdown_sha: ~
 articles:
   docker: docker.html
   templateR: templateR.html
-last_built: 2024-06-28T17:53Z
+last_built: 2024-06-28T18:19Z
 
diff --git a/reference/MotifPeeker.html b/reference/MotifPeeker.html
index 84465a2..06716c2 100644
--- a/reference/MotifPeeker.html
+++ b/reference/MotifPeeker.html
@@ -315,7 +315,7 @@ <h2>Examples</h2>
 <span class="r-in"><span>    quiet <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
 <span class="r-in"><span>    verbose <span class="op">=</span> <span class="cn">FALSE</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "/tmp/RtmpByXrE4/MotifPeeker_20240628_175311"</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "/tmp/RtmpdmXPjS/MotifPeeker_20240628_182006"</span>
 <span class="r-in"><span></span></span>
 </code></pre></div>
     </div>
diff --git a/reference/check_ENCODE.html b/reference/check_ENCODE.html
index 7761fff..b90a9bd 100644
--- a/reference/check_ENCODE.html
+++ b/reference/check_ENCODE.html
@@ -102,8 +102,8 @@ <h2>Examples</h2>
 <span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/ns-load.html" class="external-link">requireNamespace</a></span><span class="op">(</span><span class="st">"jsonlite"</span>, quietly <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
 <span class="r-in"><span>    <span class="fu">check_ENCODE</span><span class="op">(</span><span class="st">"ENCFF109VAD"</span>, expect_format <span class="op">=</span> <span class="st">"bam"</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                                                               BFC2 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> "/github/home/.cache/R/BiocFileCache/31184851a2e6_ENCFF109VAD.bam" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                                                              BFC2 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> "/github/home/.cache/R/BiocFileCache/e692a8f2096_ENCFF109VAD.bam" </span>
 <span class="r-in"><span></span></span>
 </code></pre></div>
     </div>
diff --git a/reference/check_JASPAR.html b/reference/check_JASPAR.html
index df7c35d..b1342e7 100644
--- a/reference/check_JASPAR.html
+++ b/reference/check_JASPAR.html
@@ -93,8 +93,8 @@ <h2>Value</h2>
     <div id="ref-examples">
     <h2>Examples</h2>
     <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">check_JASPAR</span><span class="op">(</span><span class="st">"MA1930.2"</span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                                                               BFC3 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> "/github/home/.cache/R/BiocFileCache/31181ef1dbee_MA1930.2.jaspar" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                                                              BFC3 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> "/github/home/.cache/R/BiocFileCache/e69158ce662_MA1930.2.jaspar" </span>
 <span class="r-in"><span></span></span>
 </code></pre></div>
     </div>
diff --git a/reference/get_JASPARCORE.html b/reference/get_JASPARCORE.html
index bff0735..b47f610 100644
--- a/reference/get_JASPARCORE.html
+++ b/reference/get_JASPARCORE.html
@@ -89,8 +89,8 @@ <h2>Value</h2>
     <div id="ref-examples">
     <h2>Examples</h2>
     <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">get_JASPARCORE</span><span class="op">(</span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                                                                                           BFC1 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> "/github/home/.cache/R/BiocFileCache/31182cb22f18_JASPAR2024_CORE_non-redundant_pfms_meme.txt" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                                                                                          BFC1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> "/github/home/.cache/R/BiocFileCache/e6973849231_JASPAR2024_CORE_non-redundant_pfms_meme.txt" </span>
 <span class="r-in"><span></span></span>
 </code></pre></div>
     </div>
diff --git a/reference/to_plotly.html b/reference/to_plotly.html
index 6824cdb..e3b2a89 100644
--- a/reference/to_plotly.html
+++ b/reference/to_plotly.html
@@ -129,7 +129,7 @@ <h2>Examples</h2>
 <span class="r-in"><span><span class="va">p</span> <span class="op">&lt;-</span> <span class="fu">ggplot2</span><span class="fu">::</span><span class="fu"><a href="https://ggplot2.tidyverse.org/reference/ggplot.html" class="external-link">ggplot</a></span><span class="op">(</span><span class="va">x</span>, <span class="fu">ggplot2</span><span class="fu">::</span><span class="fu"><a href="https://ggplot2.tidyverse.org/reference/aes.html" class="external-link">aes</a></span><span class="op">(</span>x <span class="op">=</span> <span class="va">a</span>, y <span class="op">=</span> <span class="va">b</span><span class="op">)</span><span class="op">)</span> <span class="op">+</span> <span class="fu">ggplot2</span><span class="fu">::</span><span class="fu"><a href="https://ggplot2.tidyverse.org/reference/geom_point.html" class="external-link">geom_point</a></span><span class="op">(</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="fu">to_plotly</span><span class="op">(</span><span class="va">p</span>, html_tags <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></span>
 <div id="htmlwidget-ec658d41f8c4f2d124e9" style="width:700px;height:432.632880098888px;" class="plotly html-widget"></div>
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+<script type="application/json" data-for="htmlwidget-ec658d41f8c4f2d124e9">{"x":{"data":[{"x":[1,2,3],"y":[2,3,4],"text":"","type":"scatter","mode":"markers","marker":{"autocolorscale":false,"color":"rgba(0,0,0,1)","opacity":1,"size":5.6692913385826778,"symbol":"circle","line":{"width":1.8897637795275593,"color":"rgba(0,0,0,1)"}},"hoveron":"points","showlegend":false,"xaxis":"x","yaxis":"y","hoverinfo":"text","frame":null}],"layout":{"margin":{"t":23.305936073059364,"r":7.3059360730593621,"b":37.260273972602747,"l":43.105022831050235},"plot_bgcolor":"rgba(235,235,235,1)","paper_bgcolor":"rgba(255,255,255,1)","font":{"color":"rgba(0,0,0,1)","family":"","size":14.611872146118724},"xaxis":{"domain":[0,1],"automargin":true,"type":"linear","autorange":false,"range":[0.90000000000000002,3.1000000000000001],"tickmode":"array","ticktext":["1.0","1.5","2.0","2.5","3.0"],"tickvals":[1,1.5,2,2.5,3],"categoryorder":"array","categoryarray":["1.0","1.5","2.0","2.5","3.0"],"nticks":null,"ticks":"outside","tickcolor":"rgba(51,51,51,1)","ticklen":3.6529680365296811,"tickwidth":0.66417600664176002,"showticklabels":true,"tickfont":{"color":"rgba(77,77,77,1)","family":"","size":11.68949771689498},"tickangle":-0,"showline":false,"linecolor":null,"linewidth":0,"showgrid":true,"gridcolor":"rgba(255,255,255,1)","gridwidth":0.66417600664176002,"zeroline":false,"anchor":"y","title":{"text":"a","font":{"color":"rgba(0,0,0,1)","family":"","size":14.611872146118724}},"hoverformat":".2f"},"yaxis":{"domain":[0,1],"automargin":true,"type":"linear","autorange":false,"range":[1.8999999999999999,4.0999999999999996],"tickmode":"array","ticktext":["2.0","2.5","3.0","3.5","4.0"],"tickvals":[2,2.5,3,3.5,4],"categoryorder":"array","categoryarray":["2.0","2.5","3.0","3.5","4.0"],"nticks":null,"ticks":"outside","tickcolor":"rgba(51,51,51,1)","ticklen":3.6529680365296811,"tickwidth":0.66417600664176002,"showticklabels":true,"tickfont":{"color":"rgba(77,77,77,1)","family":"","size":11.68949771689498},"tickangle":-0,"showline":false,"linecolor":null,"linewidth":0,"showgrid":true,"gridcolor":"rgba(255,255,255,1)","gridwidth":0.66417600664176002,"zeroline":false,"anchor":"x","title":{"text":"b","font":{"color":"rgba(0,0,0,1)","family":"","size":14.611872146118724}},"hoverformat":".2f"},"shapes":[{"type":"rect","fillcolor":null,"line":{"color":null,"width":0,"linetype":[]},"yref":"paper","xref":"paper","x0":0,"x1":1,"y0":0,"y1":1}],"showlegend":false,"legend":{"bgcolor":"rgba(255,255,255,1)","bordercolor":"transparent","borderwidth":1.8897637795275593,"font":{"color":"rgba(0,0,0,1)","family":"","size":11.68949771689498}},"hovermode":"closest","barmode":"relative"},"config":{"doubleClick":"reset","modeBarButtonsToAdd":["hoverclosest","hovercompare"],"showSendToCloud":false},"source":"A","attrs":{"192c500e5df7":{"x":{},"y":{},"type":"scatter"}},"cur_data":"192c500e5df7","visdat":{"192c500e5df7":["function (y) ","x"]},"highlight":{"on":"plotly_click","persistent":false,"dynamic":false,"selectize":false,"opacityDim":0.20000000000000001,"selected":{"opacity":1},"debounce":0},"shinyEvents":["plotly_hover","plotly_click","plotly_selected","plotly_relayout","plotly_brushed","plotly_brushing","plotly_clickannotation","plotly_doubleclick","plotly_deselect","plotly_afterplot","plotly_sunburstclick"],"base_url":"https://plot.ly"},"evals":[],"jsHooks":[]}</script><span class="r-in"><span></span></span>
 </code></pre></div>
     </div>
   </div>