From 278591218b43a601af33420782fdb532038d21c5 Mon Sep 17 00:00:00 2001 From: Jennifer Chang Date: Fri, 17 Nov 2023 11:32:39 -0800 Subject: [PATCH] Simplify install instructions in README --- phylogenetic/README.md | 13 +++---------- 1 file changed, 3 insertions(+), 10 deletions(-) diff --git a/phylogenetic/README.md b/phylogenetic/README.md index d39ffabc..94f83685 100644 --- a/phylogenetic/README.md +++ b/phylogenetic/README.md @@ -1,22 +1,15 @@ # nextstrain.org/dengue -This is the [Nextstrain](https://nextstrain.org) build for dengue, visible at +This is the [Nextstrain](https://nextstrain.org) build for dengue. Output from this build is visible at [nextstrain.org/dengue](https://nextstrain.org/dengue). -The build encompasses fetching data, preparing it for analysis, doing quality -control, performing analyses, and saving the results in a format suitable for -visualization (with [auspice][]). These steps involves running -[augur][] subcommands. -All dengue-specific steps and functionality for the Nextstrain pipeline should be -housed in this repository. +## Software requirements -[![Build Status](https://github.com/nextstrain/dengue/actions/workflows/ci.yaml/badge.svg?branch=main)](https://github.com/nextstrain/dengue/actions/workflows/ci.yaml) +Follow the [standard installation instructions](https://docs.nextstrain.org/en/latest/install.html) for Nextstrain's suite of software tools. ## Usage -See the [Installing Nextstrain guide][] for how to install the `nextstrain` command. - If you're unfamiliar with Nextstrain builds, you may want to follow our [Running a Pathogen Workflow guide][] first and then come back here.