From 503055494f4b9d47daab2fb29cb893968c42bef4 Mon Sep 17 00:00:00 2001
From: Thomas Sibley <tsibley@fredhutch.org>
Date: Mon, 25 Jan 2021 13:06:48 -0800
Subject: [PATCH] Add Nextalign

At Richard's request to facilitate integration of Nextalign into the
ncov builds.
---
 Dockerfile | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/Dockerfile b/Dockerfile
index be76b078..a8bf11f2 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -180,6 +180,11 @@ COPY --from=builder \
 COPY --from=builder /build/vcftools/built/bin/    /usr/local/bin/
 COPY --from=builder /build/vcftools/built/share/  /usr/local/share/
 
+# Add Nextalign
+RUN curl -fsSL https://github.com/neherlab/nextalign/releases/latest/download/nextalign-Linux-x86_64 \
+        -o /usr/local/bin/nextalign \
+ && chmod a+rx /usr/local/bin/nextalign
+
 # Ensure all container users can execute these programs
 RUN chmod a+rX /usr/local/bin/* /usr/local/libexec/*