diff --git a/ingest/defaults/annotations.tsv b/ingest/defaults/annotations.tsv index 386122a..686693a 100644 --- a/ingest/defaults/annotations.tsv +++ b/ingest/defaults/annotations.tsv @@ -34,6 +34,7 @@ AF266286 genotype_ncbi A # WHO genotype reference strains # Information from https://www.who.int/publications/i/item/WER8709 # Dates are retrieved from epi-weeks reported within strain names +# Dates are defined as the first day of the epi-week AF045212 is_reference TRUE AF045217 is_reference TRUE AF079555 is_reference TRUE @@ -146,3 +147,26 @@ U64582 date 1988-XX-XX X84865 date 1994-XX-XX X84872 date 1990-XX-XX X84879 date 1971-XX-XX +# +# Strains with rare genotypes +# Dates are retrieved from epi-weeks reported within strain names on NCBI +# Dates are defined as the first day of the epi-week +# These are force-included in the nextclade tree to boost representation of rare genotypes +AF410989 genotype_ncbi E +AY037009 genotype_ncbi G2 +AY037043 genotype_ncbi H2 +AY037026 genotype_ncbi H2 +AY037028 genotype_ncbi D2 +FJ668380 genotype_ncbi D10 +AF410989 strain MVi/Montreal.CAN/11.87 +AY037009 strain MVs/California.USA/24.00[G2] +AY037043 strain MVi/Alaska.USA/16.00[H2] +AY037026 strain MVi/Minnesota.USA/13.97[H2] +AY037028 strain MVi/New York.USA/11.00[D2] +FJ668380 strain MVi/London.GBR/7.03[D10] +AF410989 date 1987-03-09 +AY037009 date 2000-06-12 +AY037043 date 2000-04-17 +AY037026 date 1997-03-24 +AY037028 date 2000-03-13 +FJ668380 date 2003-02-10