diff --git a/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md b/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md index 9e14680a..5d77e3ab 100644 --- a/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md +++ b/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclade D.5 (included as proposed clades on 2024-11-05) diff --git a/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md b/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md index 79ff5e30..a1894237 100644 --- a/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md +++ b/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclade D.5 (included as proposed clades on 2024-11-05) diff --git a/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md b/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md index a558c065..2a3eaded 100644 --- a/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md +++ b/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05) diff --git a/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md b/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md index b51a0fb9..46a6e639 100644 --- a/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md +++ b/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05) diff --git a/data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md b/data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md index 162667d8..2dcd0709 100644 --- a/data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md +++ b/data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference tree with more recent data diff --git a/data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md b/data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md index 1b13da48..c1343789 100644 --- a/data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md +++ b/data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference tree with more recent data. - include designation of B.D.E.1.1 diff --git a/data_output/index.json b/data_output/index.json index b43e32ad..be42284a 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -899,7 +899,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -939,7 +940,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1010,7 +1012,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1050,7 +1053,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1221,7 +1225,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1269,7 +1274,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1341,7 +1347,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1397,7 +1404,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1837,7 +1845,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1869,7 +1878,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1933,7 +1943,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1965,7 +1976,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/CHANGELOG.md index 9e14680a..5d77e3ab 100644 --- a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclade D.5 (included as proposed clades on 2024-11-05) diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/README.md b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/README.md rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/dataset.zip b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/dataset.zip rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/dataset.zip index c2aa4840..6b28c54c 100644 Binary files a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/dataset.zip and b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/dataset.zip differ diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/genome_annotation.gff3 b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/pathogen.json b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/pathogen.json similarity index 97% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/pathogen.json rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/pathogen.json index 3063dca1..00f95356 100644 --- a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/pathogen.json @@ -117,7 +117,8 @@ "reference name": "A/California/7/2009-egg" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/reference.fasta b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/reference.fasta rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/sequences.fasta b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/tree.json b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/tree.json rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/CHANGELOG.md index 79ff5e30..a1894237 100644 --- a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclade D.5 (included as proposed clades on 2024-11-05) diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/README.md b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/README.md rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/dataset.zip b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/dataset.zip rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/dataset.zip index eb1e9816..9e33135e 100644 Binary files a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/dataset.zip and b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/dataset.zip differ diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/genome_annotation.gff3 b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/pathogen.json b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/pathogen.json similarity index 97% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/pathogen.json rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/pathogen.json index b8379077..54765bb9 100644 --- a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/pathogen.json @@ -119,7 +119,8 @@ "reference name": "A/Wisconsin/588/2019" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/reference.fasta b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/reference.fasta rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/sequences.fasta b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/tree.json b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/tree.json rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/CHANGELOG.md index a558c065..2a3eaded 100644 --- a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05) diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/README.md b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/README.md rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/dataset.zip b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/dataset.zip rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/dataset.zip index c8f3a959..babef59f 100644 Binary files a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/dataset.zip and b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/dataset.zip differ diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/genome_annotation.gff3 b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/pathogen.json b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/pathogen.json similarity index 97% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/pathogen.json rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/pathogen.json index a55f3330..bac17b99 100644 --- a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/pathogen.json @@ -117,7 +117,8 @@ "reference name": "A/Wisconsin/67/2005-egg" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/reference.fasta b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/reference.fasta rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/sequences.fasta b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/tree.json b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/tree.json rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/CHANGELOG.md index b51a0fb9..46a6e639 100644 --- a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05) diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/README.md b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/README.md rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/dataset.zip b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/dataset.zip rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/dataset.zip index 333b25cd..c4ce082f 100644 Binary files a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/dataset.zip and b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/dataset.zip differ diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/genome_annotation.gff3 b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/pathogen.json similarity index 98% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/pathogen.json index 6a442760..1c0869e6 100644 --- a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/pathogen.json @@ -165,7 +165,8 @@ "reference name": "A/Darwin/6/2021" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/reference.fasta b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/reference.fasta rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/sequences.fasta b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/tree.json b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/tree.json rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/CHANGELOG.md b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 94% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/CHANGELOG.md rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/CHANGELOG.md index 162667d8..2dcd0709 100644 --- a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference tree with more recent data diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/README.md b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/README.md rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/dataset.zip b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/dataset.zip rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/dataset.zip index fecbd0bc..c7911e28 100644 Binary files a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/dataset.zip and b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/dataset.zip differ diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/genome_annotation.gff3 b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/pathogen.json b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/pathogen.json similarity index 96% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/pathogen.json rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/pathogen.json index 943d4910..33fe52f2 100644 --- a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/pathogen.json +++ b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/pathogen.json @@ -100,7 +100,8 @@ "L" ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/reference.fasta b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/reference.fasta rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/sequences.fasta b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/sequences.fasta rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/tree.json b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/tree.json rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/CHANGELOG.md b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 93% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/CHANGELOG.md rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/CHANGELOG.md index 1b13da48..c1343789 100644 --- a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference tree with more recent data. - include designation of B.D.E.1.1 diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/README.md b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/README.md rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/dataset.zip b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/dataset.zip rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/dataset.zip index 3282134a..b9b9c523 100644 Binary files a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/dataset.zip and b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/dataset.zip differ diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/genome_annotation.gff3 b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/pathogen.json b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/pathogen.json similarity index 96% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/pathogen.json rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/pathogen.json index c614aed6..657368b0 100644 --- a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/pathogen.json +++ b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/pathogen.json @@ -100,7 +100,8 @@ "L" ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/reference.fasta b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/reference.fasta rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/sequences.fasta b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/sequences.fasta rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/tree.json b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/tree.json rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/tree.json