From 9b77ab0ff20e510d0e8e02e8724a9c803d46920b Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Wed, 27 Nov 2024 02:51:07 +0000 Subject: [PATCH] chore: release 2024-11-27--02-51-00Z Updated datasets: - Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680) - Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062) - Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680) - Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216) - RSV-A (nextstrain/rsv/a/EPI_ISL_412866) - RSV-B (nextstrain/rsv/b/EPI_ISL_1653999) --- .../flu/h1n1pdm/ha/CY121680/CHANGELOG.md | 2 +- .../flu/h1n1pdm/ha/MW626062/CHANGELOG.md | 2 +- .../flu/h3n2/ha/CY163680/CHANGELOG.md | 2 +- .../flu/h3n2/ha/EPI1857216/CHANGELOG.md | 2 +- .../rsv/a/EPI_ISL_412866/CHANGELOG.md | 2 +- .../rsv/b/EPI_ISL_1653999/CHANGELOG.md | 2 +- data_output/index.json | 36 ++++++++++++------ .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 1215401 -> 1215463 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 1190613 -> 1190675 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 1398957 -> 1399019 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 1497185 -> 1497247 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 2204628 -> 2204690 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 2104563 -> 2104625 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 55 files changed, 48 insertions(+), 30 deletions(-) rename data_output/nextstrain/flu/h1n1pdm/ha/CY121680/{unreleased => 2024-11-27--02-51-00Z}/CHANGELOG.md (98%) rename data_output/nextstrain/flu/h1n1pdm/ha/CY121680/{unreleased => 2024-11-27--02-51-00Z}/README.md (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/CY121680/{unreleased => 2024-11-27--02-51-00Z}/dataset.zip (99%) rename data_output/nextstrain/flu/h1n1pdm/ha/CY121680/{unreleased => 2024-11-27--02-51-00Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/CY121680/{unreleased => 2024-11-27--02-51-00Z}/pathogen.json (97%) rename data_output/nextstrain/flu/h1n1pdm/ha/CY121680/{unreleased => 2024-11-27--02-51-00Z}/reference.fasta (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/CY121680/{unreleased => 2024-11-27--02-51-00Z}/sequences.fasta (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/CY121680/{unreleased => 2024-11-27--02-51-00Z}/tree.json (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/MW626062/{unreleased => 2024-11-27--02-51-00Z}/CHANGELOG.md (98%) rename data_output/nextstrain/flu/h1n1pdm/ha/MW626062/{unreleased => 2024-11-27--02-51-00Z}/README.md (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/MW626062/{unreleased => 2024-11-27--02-51-00Z}/dataset.zip (99%) rename data_output/nextstrain/flu/h1n1pdm/ha/MW626062/{unreleased => 2024-11-27--02-51-00Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/MW626062/{unreleased => 2024-11-27--02-51-00Z}/pathogen.json (97%) rename data_output/nextstrain/flu/h1n1pdm/ha/MW626062/{unreleased => 2024-11-27--02-51-00Z}/reference.fasta (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/MW626062/{unreleased => 2024-11-27--02-51-00Z}/sequences.fasta (100%) rename data_output/nextstrain/flu/h1n1pdm/ha/MW626062/{unreleased => 2024-11-27--02-51-00Z}/tree.json (100%) rename data_output/nextstrain/flu/h3n2/ha/CY163680/{unreleased => 2024-11-27--02-51-00Z}/CHANGELOG.md (98%) rename data_output/nextstrain/flu/h3n2/ha/CY163680/{unreleased => 2024-11-27--02-51-00Z}/README.md (100%) rename data_output/nextstrain/flu/h3n2/ha/CY163680/{unreleased => 2024-11-27--02-51-00Z}/dataset.zip (99%) rename data_output/nextstrain/flu/h3n2/ha/CY163680/{unreleased => 2024-11-27--02-51-00Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/flu/h3n2/ha/CY163680/{unreleased => 2024-11-27--02-51-00Z}/pathogen.json (97%) rename data_output/nextstrain/flu/h3n2/ha/CY163680/{unreleased => 2024-11-27--02-51-00Z}/reference.fasta (100%) rename data_output/nextstrain/flu/h3n2/ha/CY163680/{unreleased => 2024-11-27--02-51-00Z}/sequences.fasta (100%) rename data_output/nextstrain/flu/h3n2/ha/CY163680/{unreleased => 2024-11-27--02-51-00Z}/tree.json (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-11-27--02-51-00Z}/CHANGELOG.md (98%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-11-27--02-51-00Z}/README.md (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-11-27--02-51-00Z}/dataset.zip (99%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-11-27--02-51-00Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-11-27--02-51-00Z}/pathogen.json (98%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-11-27--02-51-00Z}/reference.fasta (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-11-27--02-51-00Z}/sequences.fasta (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-11-27--02-51-00Z}/tree.json (100%) rename data_output/nextstrain/rsv/a/EPI_ISL_412866/{unreleased => 2024-11-27--02-51-00Z}/CHANGELOG.md (94%) rename data_output/nextstrain/rsv/a/EPI_ISL_412866/{unreleased => 2024-11-27--02-51-00Z}/README.md (100%) rename data_output/nextstrain/rsv/a/EPI_ISL_412866/{unreleased => 2024-11-27--02-51-00Z}/dataset.zip (99%) rename data_output/nextstrain/rsv/a/EPI_ISL_412866/{unreleased => 2024-11-27--02-51-00Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/rsv/a/EPI_ISL_412866/{unreleased => 2024-11-27--02-51-00Z}/pathogen.json (96%) rename data_output/nextstrain/rsv/a/EPI_ISL_412866/{unreleased => 2024-11-27--02-51-00Z}/reference.fasta (100%) rename data_output/nextstrain/rsv/a/EPI_ISL_412866/{unreleased => 2024-11-27--02-51-00Z}/sequences.fasta (100%) rename data_output/nextstrain/rsv/a/EPI_ISL_412866/{unreleased => 2024-11-27--02-51-00Z}/tree.json (100%) rename data_output/nextstrain/rsv/b/EPI_ISL_1653999/{unreleased => 2024-11-27--02-51-00Z}/CHANGELOG.md (93%) rename data_output/nextstrain/rsv/b/EPI_ISL_1653999/{unreleased => 2024-11-27--02-51-00Z}/README.md (100%) rename data_output/nextstrain/rsv/b/EPI_ISL_1653999/{unreleased => 2024-11-27--02-51-00Z}/dataset.zip (99%) rename data_output/nextstrain/rsv/b/EPI_ISL_1653999/{unreleased => 2024-11-27--02-51-00Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/rsv/b/EPI_ISL_1653999/{unreleased => 2024-11-27--02-51-00Z}/pathogen.json (96%) rename data_output/nextstrain/rsv/b/EPI_ISL_1653999/{unreleased => 2024-11-27--02-51-00Z}/reference.fasta (100%) rename data_output/nextstrain/rsv/b/EPI_ISL_1653999/{unreleased => 2024-11-27--02-51-00Z}/sequences.fasta (100%) rename data_output/nextstrain/rsv/b/EPI_ISL_1653999/{unreleased => 2024-11-27--02-51-00Z}/tree.json (100%) diff --git a/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md b/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md index 9e14680a..5d77e3ab 100644 --- a/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md +++ b/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclade D.5 (included as proposed clades on 2024-11-05) diff --git a/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md b/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md index 79ff5e30..a1894237 100644 --- a/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md +++ b/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclade D.5 (included as proposed clades on 2024-11-05) diff --git a/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md b/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md index a558c065..2a3eaded 100644 --- a/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md +++ b/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05) diff --git a/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md b/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md index b51a0fb9..46a6e639 100644 --- a/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md +++ b/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05) diff --git a/data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md b/data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md index 162667d8..2dcd0709 100644 --- a/data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md +++ b/data/nextstrain/rsv/a/EPI_ISL_412866/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference tree with more recent data diff --git a/data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md b/data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md index 1b13da48..c1343789 100644 --- a/data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md +++ b/data/nextstrain/rsv/b/EPI_ISL_1653999/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference tree with more recent data. - include designation of B.D.E.1.1 diff --git a/data_output/index.json b/data_output/index.json index b43e32ad..be42284a 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -899,7 +899,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -939,7 +940,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1010,7 +1012,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1050,7 +1053,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1221,7 +1225,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1269,7 +1274,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1341,7 +1347,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1397,7 +1404,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1837,7 +1845,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1869,7 +1878,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1933,7 +1943,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1965,7 +1976,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/CHANGELOG.md index 9e14680a..5d77e3ab 100644 --- a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclade D.5 (included as proposed clades on 2024-11-05) diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/README.md b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/README.md rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/dataset.zip b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/dataset.zip rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/dataset.zip index c2aa48409a733bf616d6a7e569623586a7816882..6b28c54c068b329cfd8929effcc881e290a088d9 100644 GIT binary patch delta 354 zcmZ2E-Rt>uFNXkcW)=|!2vB5LaGy!fS47C*?^cGh&h0m z6NtHhm>YFLeo7F&>=G+bv|nq@gz5yIaUwIkt_Fp`<7^RWGYJKQF+Wl?|kr P9S9dPGB6l)2?2Qkz*A6# delta 295 zcmaDp-D~A^FY^FzW)=|!2vB7B8P&7dm4kr+gn591&K{0_?yf%m?s~Z?%E}6%c}1x? zsfop@DH|Q*g}E5S1h-${VqmzywRx3rA(voDV!D!*f>J45Rda$|dx9Jz5HkTWGZ3=? zF)I+W0Wmuea{w_X5OV=BHxTmxF)tAF0Wm)i3jnd;_5?Yh2icr($4&R_67puupFXuq z$c(94X!1fKiRn+fgao7!4q{;7g?b7^En)1KF3>Gx#n?REyIaVH>6PmA&Tb)VW%)Kn ghLWPxRK2X?{Ja2fRyL4gb|75H$iVQaQwYcd0GX~%bpQYW diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/genome_annotation.gff3 b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/pathogen.json b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/pathogen.json similarity index 97% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/pathogen.json rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/pathogen.json index 3063dca1..00f95356 100644 --- a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/pathogen.json @@ -117,7 +117,8 @@ "reference name": "A/California/7/2009-egg" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/reference.fasta b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/reference.fasta rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/sequences.fasta b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/tree.json b/data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/CY121680/unreleased/tree.json rename to data_output/nextstrain/flu/h1n1pdm/ha/CY121680/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/CHANGELOG.md index 79ff5e30..a1894237 100644 --- a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclade D.5 (included as proposed clades on 2024-11-05) diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/README.md b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/README.md rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/dataset.zip b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/dataset.zip rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/dataset.zip index eb1e981663faa7a06cc25cd2b5f6e8b9b55cf57e..9e33135ef3afd39627875e4aca110b3dbe2e04d8 100644 GIT binary patch delta 368 zcmcb5)noEC4~GD6W)=|!2vB5L5U?x$0XqW&2=f31ojn}=++BVA-Su))l$8~X42(>4 z4GndT%tH)}tV|893=Af&Gu)W2Da1Ktc2K%CHv@z9=9xk(xm-&NQW8s2Qyfc_tQ3^6 zXp2(P;ZgtsrIN&SR3*B)21dH3hPnm@QO&`!?ZL8)K+FWh%s|Wn#H>Kf2E^<@%mKul zK+FZi+(66&#JoVv2gLk9EC9rU+k<6=ZgX?O{WjfPQ^=c8?STns0NGY#xWn?HRN=?>Nb92JoHoa6+$eWR2`aw-0 zGnP_828PK2B4XMB-i%Bl%m}Z*9S3wEFVuq|Y6)Z0bQ>)pE5 diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/genome_annotation.gff3 b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/pathogen.json b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/pathogen.json similarity index 97% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/pathogen.json rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/pathogen.json index b8379077..54765bb9 100644 --- a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/pathogen.json @@ -119,7 +119,8 @@ "reference name": "A/Wisconsin/588/2019" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/reference.fasta b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/reference.fasta rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/sequences.fasta b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/tree.json b/data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h1n1pdm/ha/MW626062/unreleased/tree.json rename to data_output/nextstrain/flu/h1n1pdm/ha/MW626062/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/CHANGELOG.md index a558c065..2a3eaded 100644 --- a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05) diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/README.md b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/README.md rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/dataset.zip b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/dataset.zip rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/dataset.zip index c8f3a9592230c11916440a425e3fd61f71107f45..babef59fdd6be06d40053d7ab1eedc44070432cd 100644 GIT binary patch delta 350 zcmZ3xG4%DuP=^3-W)=|!2vB4&5AFXR&Bnk0!aP7hXAeg|cUK>OcfH&cWn~2;10xe% 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data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/pathogen.json index a55f3330..bac17b99 100644 --- a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/pathogen.json @@ -117,7 +117,8 @@ "reference name": "A/Wisconsin/67/2005-egg" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/reference.fasta b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/reference.fasta rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/sequences.fasta b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/tree.json b/data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/CY163680/unreleased/tree.json rename to data_output/nextstrain/flu/h3n2/ha/CY163680/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/CHANGELOG.md index b51a0fb9..46a6e639 100644 --- a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference trees - include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05) diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/README.md b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/README.md rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/dataset.zip b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/dataset.zip rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/dataset.zip index 333b25cde82919bfc7998dbab41c8e58b31fdf2c..c4ce082fa1870d44bc3ff3deb7a522d310dfe3be 100644 GIT binary patch delta 371 zcmaF3A$tDCXomoAW)=|!2vB5L?$w#f$j-n3!aP7hXAeg|cUK>OcfH&cWn~2;10xe% zLqlC7^AH0gD^o)&1A~eC4K}7l2y$(DJ!`oUKLdji|K<~d^Z8s$3sMqGQd1mDl&ln# zu;`0Y(&1770;Q6~bW|m}x&}tNriQu(22srw3hfmNj6lo;#LPg<0>rF9%m&2lK+FNe zoIuP4#N0s41H`;Q%m>8$Kr8^nfq-*D-^_>ws9dmJN?KtF)v2#>HOEl z%$U{*OgOcfH&cWo3oXyrR^c z)WqV{l#PzQ9w6ogVm=_|2Vwyr76f7;AQlE<5g-=b zenmk{Wg8d5)zg`-i+M3BPWQboX2!BafPrChov_&Sx!1)6q!Er~VBm#%7(^{$+%Wyb kbulZZn+nreZirbk3QTvnA!frUG`;qQm<-#hYhpk}05lR`cK`qY diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/genome_annotation.gff3 b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/pathogen.json similarity index 98% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/pathogen.json index 6a442760..1c0869e6 100644 --- a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/pathogen.json @@ -165,7 +165,8 @@ "reference name": "A/Darwin/6/2021" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/reference.fasta b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/reference.fasta rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/sequences.fasta b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/tree.json b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/tree.json rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-11-27--02-51-00Z/tree.json diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/CHANGELOG.md b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/CHANGELOG.md similarity index 94% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/CHANGELOG.md rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/CHANGELOG.md index 162667d8..2dcd0709 100644 --- a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-11-27T02:51:00Z - update reference tree with more recent data diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/README.md b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/README.md similarity index 100% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/README.md rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/README.md diff --git a/data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/dataset.zip b/data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/dataset.zip similarity index 99% rename from data_output/nextstrain/rsv/a/EPI_ISL_412866/unreleased/dataset.zip rename to data_output/nextstrain/rsv/a/EPI_ISL_412866/2024-11-27--02-51-00Z/dataset.zip index fecbd0bcacb2506dcfebf9b4573ad1d87206f039..c7911e283b6e11ffc1b9d082c0e6eee9c3ea4594 100644 GIT binary patch delta 414 zcmca|yp3_vi8e;Z0B>d%5e5iQWN_W6dt^T&0|N;200o^r9R1u~ef-_^a#NI*6^smw zOmqzmb&bqJ42-Ny4Xq3eqBfepSL521X1AE1lYxPsbF+bZ4To!KK}uptYKmitl9hrI zHeE_OTna#-RFasEszg`Uz)08BP#0)&^IrY-z50wm%ml>DK+FQftU$~L#Oy%K0mPg@ z%mu{UK+FTgygok)j!+*z}!?6g8z0erI6dg@z=ETEeI_{qG`0 zE5?}V7K;^an1pktmn~MbR$gVr%urI4nyQyooSzrq&B_K+%npPLfq@>qND;^b07&b0 A!~g&Q delta 330 zcmbPqqK)y&@is>D0B>d%5e5iQWN>@@*KaE$0|N;200o^r9R1u~ef-_^a#NI*6+-ih zQgc!hi&IlJI=)xq`fF;}e4B%T;Wo!+EA<)#p^%;Sf35c12 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rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/pathogen.json index c614aed6..657368b0 100644 --- a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/pathogen.json +++ b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/pathogen.json @@ -100,7 +100,8 @@ "L" ], "version": { - "tag": "unreleased", + "updatedAt": "2024-11-27T02:51:00Z", + "tag": "2024-11-27--02-51-00Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/reference.fasta b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/reference.fasta similarity index 100% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/reference.fasta rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/reference.fasta diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/sequences.fasta b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/sequences.fasta rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/sequences.fasta diff --git a/data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/tree.json b/data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/tree.json similarity index 100% rename from data_output/nextstrain/rsv/b/EPI_ISL_1653999/unreleased/tree.json rename to data_output/nextstrain/rsv/b/EPI_ISL_1653999/2024-11-27--02-51-00Z/tree.json