From c9eea9851cc54b81d094e0b0036aa99be8c87987 Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Tue, 27 Aug 2024 07:01:49 +0000 Subject: [PATCH] chore: rebuild [skip ci] --- .../mpox/all-clades/unreleased/CHANGELOG.md | 20 ++++++++++++++++++ .../mpox/all-clades/unreleased/dataset.zip | Bin 4497102 -> 4498473 bytes 2 files changed, 20 insertions(+) diff --git a/data_output/nextstrain/mpox/all-clades/unreleased/CHANGELOG.md b/data_output/nextstrain/mpox/all-clades/unreleased/CHANGELOG.md index a416df66..8bdc23f8 100644 --- a/data_output/nextstrain/mpox/all-clades/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/mpox/all-clades/unreleased/CHANGELOG.md @@ -2,3 +2,23 @@ - Clade Ia and clade Ib are now distinguished - Sequences shared via Genbank since 2024 have been added + +## 2024-04-19T07:50:39Z + +- New hMPXV-1 lineages B.1.21, B.1.22, and C.1.1 are now included in the dataset. For more information on these lineages, see the [hMPXV-1 lineage definitions PR](https://github.com/mpxv-lineages/lineage-designation/pull/37) +- The sequences used in the reference trees have been updated to include the latest sequences available in Genbank as of 2024-04-16 + +## 2024-01-16T20:31:02Z + +Initial release of this dataset. This dataset is similar to the v2 dataset [`MPXV/ancestral`](https://github.com/nextstrain/nextclade_data/tree/2023-08-17--15-51-24--UTC/data/datasets/MPXV/references/ancestral/versions/2023-08-01T12%3A00%3A00Z/files) with some differences. + +### New and changed gene names + +Some genes have been renamed and one has been added. The new annotation is based on NCBI refseq annotations that were released in November 2022. The v2 dataset predates this refseq: + +- The 4 genes in the inverted terminal repeat segment (ITR) on both ends of the genome (OPG001, OPG002, OPG003,OPG015) are now all included. The genes on the 3' end (~positions 190000-197000) now have an `_dup` appended to distinguish them. +- The gene previously named `NBT03_gp052` is now called `OPG073` +- The gene previously named `NBT03_gp174` is now called `OPG016` +- The gene previously named `NBT03_gp175` is now called `OPG015_dup` +- Gene `OPG166` has been added + diff --git a/data_output/nextstrain/mpox/all-clades/unreleased/dataset.zip b/data_output/nextstrain/mpox/all-clades/unreleased/dataset.zip index a2bc0c1b249f0bb17a8297cb8388c6a2bd791a5b..27287437d2385ba10fd820a87104e3b4c3b0efb8 100644 GIT binary patch delta 1626 zcmaJ?zjGT!7!`_bK;c)w1Vi|-!6dPQPr5x>QltbzY=OsQFrFY7CMm3yZzbJu+7q`Y z84A!)d@z(Gg&LgshK5Ozl9Gasf}wB+e*-fN9R&s7t}M%w$>a*Hv_IbW_PzI=e*gJq z`p&O6(+gWykIl@d#?R^0@JDZde>RocpZ#v(+hJyLk$JAS;%6!1@kb74VW6aFOU+huJm>M{@#rlxp?tPRbDW7-G8OHzK<$KmU;6ZgB^}9p zkq9l59D658_2){% ze6Jsd`9e8MgzHpI%TN1K?GV$xo^ps~OU7oJC9$Nnju=SRlv1&NkNDBXB$^Pnr9+z3 z$q_U$5J4!Kp<&O~rD_WG2@`tAqSjQvQf8_rcX+Apk(j*ddZg!uAud7|%TSUY=3LSV z^i-bukzb4!bkL=Wv0-Lp9C(wh>_)@5k{5KJIi18JY~1?eI2$VYS+WxfUv3-8^X8^` z^0wf(7aU%89A0#a+##=>59@1ryXU|gowtC8Drt*tq4NV7Ya{p}l*{YfJ5#vgy7uFG zz7>R0XW4K!NIFbMU9voA9q6rdMv_IFB@>mMj!r9B7M*_yyDVBonEFPYunYff>5ln?e}{PCVD+OG;Rn#&`F@${Xln2 z1iQI|D_iqOltB>nb@;jU(PzWP=4#z7Y`1%E(Q6np%-djxSQ1*pkS`Y+4@5Ww;N_M3 z0`SrU0Ir%c6AHXsygx$GUXy67n*1|S8t@q44B#x_9N@!%j{rUj zm;pQv_!!{hfKLEE3HTJ?3BacTp8=c)d=~H|;B$ZrfX@TI0C)=UMZlK;Uj}>ykO7_s zd=+pJ@HN0QfM)^E0WJY%0nY=z4!8{H0OkPmfG!{h^Z*NhD}Y775?~qd0$>HO3V0Fl z65tzvZvtKhd<*aj;40wSPgwir`^@yMKjM3}chmpPj=tEd6=(iAkxGsD{MnPE-}Y+f p)4%*V`ggBZNq_yG5z-6qn;UMW_0&~{GMJb^8KYE?R?Jb3yZ&rio5%>%OasDZtRPatIl2J zfrJ-6)PH^i(11o*XhIOpXh8_AXhSZ5yu$D zF@Z@WFokI(F@ssmVIB)uL<&n-#tPC{MFwkF#|AdBg>7W9^Xw{Jez5*4GFLUdE33kM z)^tkV22IG(S-JmV_8gs-i7#{Q=#2dNHgDXRrQ+iBxKKzQoE#nIbIM=uJit~xLPQ=l F=@*s>ncM&X