From d0d7a0c6da2b4b1f32d8ae0af6a3ad88c4f5c8e0 Mon Sep 17 00:00:00 2001
From: Kim Andrews <17375001+kimandrews@users.noreply.github.com>
Date: Thu, 22 Aug 2024 14:20:59 -0700
Subject: [PATCH] Remove `.github/workflows/ingest.yaml`

---
 .github/workflows/ingest.yaml | 80 -----------------------------------
 1 file changed, 80 deletions(-)
 delete mode 100644 .github/workflows/ingest.yaml

diff --git a/.github/workflows/ingest.yaml b/.github/workflows/ingest.yaml
deleted file mode 100644
index cb7100c..0000000
--- a/.github/workflows/ingest.yaml
+++ /dev/null
@@ -1,80 +0,0 @@
-name: Ingest
-
-defaults:
-  run:
-    # This is the same as GitHub Action's `bash` keyword as of 20 June 2023:
-    # https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsshell
-    #
-    # Completely spelling it out here so that GitHub can't change it out from under us
-    # and we don't have to refer to the docs to know the expected behavior.
-    shell: bash --noprofile --norc -eo pipefail {0}
-
-on:
-  workflow_call:
-    inputs:
-      image:
-        description: 'Specific container image to use for ingest workflow (will override the default of "nextstrain build")'
-        required: false
-        type: string
-
-  workflow_dispatch:
-    inputs:
-      image:
-        description: 'Specific container image to use for ingest workflow (will override the default of "nextstrain build")'
-        required: false
-        type: string
-      trial_name:
-        description: |
-          Trial name for outputs.
-          If not set, outputs will overwrite files at s3://nextstrain-data/files/workflows/rabies/
-          If set, outputs will be uploaded to s3://nextstrain-data/files/workflows/rabies/trials/<trial_name>/
-        required: false
-        type: string
-
-jobs:
-  set_config_overrides:
-    runs-on: ubuntu-latest
-    steps:
-      - id: config
-        name: Set config overrides
-        env:
-          TRIAL_NAME: ${{ inputs.trial_name }}
-        run: |
-          config=""
-          if [[ "$TRIAL_NAME" ]]; then
-            config+="--config"
-            config+=" s3_dst='s3://nextstrain-data/files/workflows/rabies/trials/"$TRIAL_NAME"'"
-          fi
-
-          echo "config=$config" >> "$GITHUB_OUTPUT"
-    outputs:
-      config_overrides: ${{ steps.config.outputs.config }}
-
-  ingest:
-    needs: [set_config_overrides]
-    permissions:
-      id-token: write
-    uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
-    secrets: inherit
-    with:
-      # Starting with the default docker runtime
-      # We can migrate to AWS Batch when/if we need to for more resources or if
-      # the job runs longer than the GH Action limit of 6 hours.
-      runtime: docker
-      env: |
-        NEXTSTRAIN_DOCKER_IMAGE: ${{ inputs.image }}
-        CONFIG_OVERRIDES: ${{ needs.set_config_overrides.outputs.config_overrides }}
-      run: |
-        nextstrain build \
-          ingest \
-            upload_all \
-            --configfile build-configs/nextstrain-automation/config.yaml \
-            $CONFIG_OVERRIDES
-      # Specifying artifact name to differentiate ingest build outputs from
-      # the phylogenetic build outputs
-      artifact-name: ingest-build-output
-      artifact-paths: |
-        ingest/results/
-        ingest/benchmarks/
-        ingest/logs/
-        ingest/.snakemake/log/