diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml index aa6416ec..dd68bc7f 100644 --- a/.github/workflows/awsfulltest.yml +++ b/.github/workflows/awsfulltest.yml @@ -15,9 +15,6 @@ jobs: steps: - name: Launch workflow via tower uses: seqeralabs/action-tower-launch@v2 - # TODO nf-core: You can customise AWS full pipeline tests as required - # Add full size test data (but still relatively small datasets for few samples) - # on the `test_full.config` test runs with only one set of parameters with: workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} diff --git a/CHANGELOG.md b/CHANGELOG.md index c41dd5ec..3d844a1e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -21,7 +21,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Fixed` -- [[#265](https://github.com/nf-core/differentialabundance/pull/265) - GSEA- pngs and htmls in same place ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO)) +- [[#267](https://github.com/nf-core/differentialabundance/pull/267)] - Whitespace fix, remove TODO, also update changelog for release release 1.5.0 ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords)) +- [[#265](https://github.com/nf-core/differentialabundance/pull/265)] - GSEA- pngs and htmls in same place ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO)) - [[#257](https://github.com/nf-core/differentialabundance/pull/257)] - Fixed FILTER_DIFFTABLE module, updated PROTEUS module to better handle whitespace in prefix param, made docs clearer ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords)) - [[#254](https://github.com/nf-core/differentialabundance/pull/254)] - Made differential_file_suffix optional ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords)) - [[#240](https://github.com/nf-core/differentialabundance/pull/240)] - Publish GSEA reports ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO)) @@ -35,6 +36,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Changed` +- [[#256](https://github.com/nf-core/differentialabundance/pull/256)] - Release 1.5.0 ([@WackerO](https://github.com/WackerO), review by [@maxulysse](https://github.com/maxulysse), [@pinin4fjords](https://github.com/pinin4fjords)) - [[#264](https://github.com/nf-core/differentialabundance/pull/264)] - Change FILTER_DIFFTABLE to python because AWK does not correctly filter reliably ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords)) - [[#232](https://github.com/nf-core/differentialabundance/pull/232)] - Mention missing dots in volcano plot, change rounding, turn off rounding by default ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords)) diff --git a/main.nf b/main.nf index eb85e568..8d350dad 100644 --- a/main.nf +++ b/main.nf @@ -17,7 +17,7 @@ nextflow.enable.dsl = 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ -include { DIFFERENTIALABUNDANCE } from './workflows/differentialabundance' +include { DIFFERENTIALABUNDANCE } from './workflows/differentialabundance' include { PIPELINE_INITIALISATION } from './subworkflows/local/utils_nfcore_differentialabundance_pipeline' include { PIPELINE_COMPLETION } from './subworkflows/local/utils_nfcore_differentialabundance_pipeline'