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Cannot edit config files #209

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aperreault opened this issue Nov 1, 2024 · 2 comments
Open

Cannot edit config files #209

aperreault opened this issue Nov 1, 2024 · 2 comments

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@aperreault
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Hi there! I'm using nf-core/hic through a docker profile and need to edit the nextflow.config file to change the max resources my computer has available. Any advice on how to do so? I've tried creating a custom config file and running nf-core/hic with -c and -C commands, but neither overrides the pipeline defaults. Thanks!

@nservant
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nservant commented Nov 8, 2024

Hi,
That's weird. Usually, using -c is the right way to go.
Could you show me your custom config please ?

@aperreault
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Below is the contents of the config file:

process {
resourceLimits = [
cpus: 8,
memory: 256.GB,
time: 24.h
]
}

I have it names resource.config

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