From c8e3ccd893d566717be3f939e667e5d41de57941 Mon Sep 17 00:00:00 2001
From: Sateesh <perisateesh@gmail.com>
Date: Thu, 17 Oct 2024 16:44:00 +0000
Subject: [PATCH] update SAMTOOLS_FAIDX fasta input after reorg

---
 subworkflows/local/prepare_genome/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/subworkflows/local/prepare_genome/main.nf b/subworkflows/local/prepare_genome/main.nf
index b98a044f..8f8523a1 100644
--- a/subworkflows/local/prepare_genome/main.nf
+++ b/subworkflows/local/prepare_genome/main.nf
@@ -88,7 +88,7 @@ workflow PREPARE_GENOME {
             ch_fasta_index.dump(tag: 'PREPARE_GENOME: ch_fasta_index')
         } else {
             SAMTOOLS_FAIDX(
-                ch_fasta.map{ fasta -> [[:], fasta]},
+                ch_fasta,
                 [[:], []]
             )
             ch_fasta_index = SAMTOOLS_FAIDX.out.fai.map{ return(it[1])}