update metaphlan module (#3661)

nf-core · Jul 21, 2023 · 1038d3d · 1038d3d
1 parent f2f4883
commit 1038d3d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/modules/nf-core/metaphlan/metaphlan/main.nf b/modules/nf-core/metaphlan/metaphlan/main.nf
@@ -28,8 +28,8 @@ process METAPHLAN_METAPHLAN {
     def bowtie2_out = "$input_type" == "--input_type bowtie2out" || "$input_type" == "--input_type sam" ? '' : "--bowtie2out ${prefix}.bowtie2out.txt"
 
     """
-    BT2_DB=`find -L "${metaphlan_db_latest}" -name "*rev.1.bt2l" -exec dirname {} \\;`
-    BT2_DB_INDEX=`find -L ${metaphlan_db_latest} -name "*.rev.1.bt2l" | sed 's/\\.rev.1.bt2l\$//' | sed 's/.*\\///'`
+    BT2_DB=`find -L "${metaphlan_db_latest}" -name "*rev.1.bt2*" -exec dirname {} \\;`
+    BT2_DB_INDEX=`find -L ${metaphlan_db_latest} -name "*.rev.1.bt2*" | sed 's/\\.rev.1.bt2.*\$//' | sed 's/.*\\///'`
 
     metaphlan \\
         --nproc $task.cpus \\