From 5caf7640a9ef1d18d765d55339be751bb0969dfa Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Wed, 28 Feb 2024 22:27:21 +0100 Subject: [PATCH] remove params.outdir from modules and subworfklows tests (#5007) * remove params.outdir from modules and subworfklows tests * update usage of params outdir * update more tests * Apply suggestions from code review * Apply suggestions from code review * update snap * update snap * update even more snaps * remove obsolete snaps --- .../sratoolsncbisettings/tests/main.nf.test | 1 - .../tests/main.nf.test.snap | 8 ++- .../tests/nextflow.config | 2 - .../genomicsdbimport/tests/main.nf.test.snap | 10 +++ .../mtmalign/align/tests/main.nf.test.snap | 20 +++++- .../sratools/fasterqdump/tests/main.nf.test | 8 --- .../fasterqdump/tests/main.nf.test.snap | 12 +++- .../sratools/prefetch/tests/main.nf.test | 6 -- .../sratools/prefetch/tests/main.nf.test.snap | 12 +++- .../tcoffee/align/tests/main.nf.test.snap | 62 +++++++++++++++---- modules/nf-core/untar/tests/main.nf.test | 8 --- modules/nf-core/untar/tests/main.nf.test.snap | 12 +++- .../tests/main.nf.test | 3 - .../tests/main.nf.test.snap | 42 ++++++++++--- .../tests/main.function.nf.test | 2 +- .../tests/main.function.nf.test.snap | 12 +++- .../tests/main.workflow.nf.test | 20 ++---- .../tests/nextflow.config | 2 +- .../tests/main.function.nf.test.snap | 42 ++++++++++--- .../tests/main.workflow.nf.test.snap | 6 +- .../tests/main.nf.test | 2 +- 21 files changed, 205 insertions(+), 87 deletions(-) diff --git a/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test b/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test index 7591d2f1993..b8b95320b7a 100644 --- a/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test +++ b/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test @@ -15,7 +15,6 @@ nextflow_process { params { settings_path = '/tmp/.ncbi' settings_file = "${params.settings_path}/user-settings.mkfg" - outdir = "$outputDir" } process { diff --git a/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test.snap b/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test.snap index 65a706d4b1f..5e314f0be0b 100644 --- a/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test.snap +++ b/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test.snap @@ -5,6 +5,10 @@ "versions.yml:md5,3d6ee88cce1ee517e198633f062589a8" ] ], - "timestamp": "2024-01-09T22:43:44.996003" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T11:47:15.824443" } -} +} \ No newline at end of file diff --git a/modules/nf-core/custom/sratoolsncbisettings/tests/nextflow.config b/modules/nf-core/custom/sratoolsncbisettings/tests/nextflow.config index c4a96e9437c..df5def04a0d 100644 --- a/modules/nf-core/custom/sratoolsncbisettings/tests/nextflow.config +++ b/modules/nf-core/custom/sratoolsncbisettings/tests/nextflow.config @@ -4,8 +4,6 @@ params.settings_file = "${params.settings_path}/user-settings.mkfg" env.NCBI_SETTINGS = params.settings_file process { - - publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" } withName: CUSTOM_SRATOOLSNCBISETTINGS { containerOptions = { (workflow.containerEngine == 'singularity') ? diff --git a/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test.snap b/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test.snap index c47917dc66a..a633bbdc16c 100644 --- a/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test.snap +++ b/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test.snap @@ -1,4 +1,14 @@ { + "test_gatk4_genomicsdbimport_get_intervalslist": { + "content": [ + "test.interval_list:md5,4c85812ac15fc1cd29711a851d23c0bf" + ], + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T17:55:03.846241" + }, "test_gatk4_genomicsdbimport_create_genomicsdb": { "content": [ "__tiledb_workspace.tdb", diff --git a/modules/nf-core/mtmalign/align/tests/main.nf.test.snap b/modules/nf-core/mtmalign/align/tests/main.nf.test.snap index eb321457474..28a665062ff 100644 --- a/modules/nf-core/mtmalign/align/tests/main.nf.test.snap +++ b/modules/nf-core/mtmalign/align/tests/main.nf.test.snap @@ -1,10 +1,26 @@ { - "versions": { + "versions0": { "content": [ [ "versions.yml:md5,7cbacec15bb9e0c8cbb27610bde74c10" ] ], - "timestamp": "2024-01-25T18:21:22.385207003" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T19:04:20.621422" + }, + "versions1": { + "content": [ + [ + "versions.yml:md5,7cbacec15bb9e0c8cbb27610bde74c10" + ] + ], + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T19:04:47.062692" } } \ No newline at end of file diff --git a/modules/nf-core/sratools/fasterqdump/tests/main.nf.test b/modules/nf-core/sratools/fasterqdump/tests/main.nf.test index 48722e4ee03..cb81496f079 100644 --- a/modules/nf-core/sratools/fasterqdump/tests/main.nf.test +++ b/modules/nf-core/sratools/fasterqdump/tests/main.nf.test @@ -23,10 +23,6 @@ nextflow_process { } when { - params { - outdir = "$outputDir" - } - process { """ input[0] = UNTAR.out.untar.map{ meta, files -> [ [ id:'test_single_end', single_end:true ], files]} @@ -58,10 +54,6 @@ nextflow_process { } when { - params { - outdir = "$outputDir" - } - process { """ input[0] = UNTAR.out.untar.map{ meta, files -> [ [ id:'test_paired_end', single_end:false ], files]} diff --git a/modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap b/modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap index e2cc2612c11..14a6429df31 100644 --- a/modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap +++ b/modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap @@ -28,7 +28,11 @@ ] } ], - "timestamp": "2024-01-09T12:55:00.629261" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T15:25:52.837288" }, "Paired-end": { "content": [ @@ -65,6 +69,10 @@ ] } ], - "timestamp": "2024-01-09T12:55:34.40299" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T15:26:42.466223" } } \ No newline at end of file diff --git a/modules/nf-core/sratools/prefetch/tests/main.nf.test b/modules/nf-core/sratools/prefetch/tests/main.nf.test index ed710ba0ec4..f59de7cbbc4 100644 --- a/modules/nf-core/sratools/prefetch/tests/main.nf.test +++ b/modules/nf-core/sratools/prefetch/tests/main.nf.test @@ -10,9 +10,6 @@ nextflow_process { test("sratools/prefetch") { when { - params { - outdir = "output" - } process { """ input[0] = Channel.of([ [ id:'test', single_end:false ], 'DRR000774' ]) @@ -33,9 +30,6 @@ nextflow_process { test("sratools/prefetch with sralite") { when { - params { - outdir = "output" - } process { """ input[0] = Channel.of([ [ id:'test', single_end:false ], 'SRR1170046' ]) diff --git a/modules/nf-core/sratools/prefetch/tests/main.nf.test.snap b/modules/nf-core/sratools/prefetch/tests/main.nf.test.snap index ab1d2088931..946fc869ca1 100644 --- a/modules/nf-core/sratools/prefetch/tests/main.nf.test.snap +++ b/modules/nf-core/sratools/prefetch/tests/main.nf.test.snap @@ -32,7 +32,11 @@ ] } ], - "timestamp": "2023-10-13T12:11:24.563510389" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T11:49:02.309737" }, "sratools/prefetch": { "content": [ @@ -67,6 +71,10 @@ ] } ], - "timestamp": "2023-10-13T12:11:02.75256571" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T11:48:37.428307" } } \ No newline at end of file diff --git a/modules/nf-core/tcoffee/align/tests/main.nf.test.snap b/modules/nf-core/tcoffee/align/tests/main.nf.test.snap index 94b9d4e3cce..9bdadbd4e42 100644 --- a/modules/nf-core/tcoffee/align/tests/main.nf.test.snap +++ b/modules/nf-core/tcoffee/align/tests/main.nf.test.snap @@ -5,15 +5,11 @@ "versions.yml:md5,fb187c9186b50a8076d08cd3be3c1b70" ] ], - "timestamp": "2024-02-09T19:43:36.590833926" - }, - "versions": { - "content": [ - [ - "versions.yml:md5,fb187c9186b50a8076d08cd3be3c1b70" - ] - ], - "timestamp": "2024-02-09T19:42:52.802861054" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T19:00:28.712838" }, "alignment - uncompressed": { "content": [ @@ -26,7 +22,23 @@ ] ] ], - "timestamp": "2024-02-09T19:43:05.936032398" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T18:59:54.582504" + }, + "versions_comp": { + "content": [ + [ + "versions.yml:md5,fb187c9186b50a8076d08cd3be3c1b70" + ] + ], + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T18:59:54.593312" }, "versions_guidetree": { "content": [ @@ -34,7 +46,11 @@ "versions.yml:md5,fb187c9186b50a8076d08cd3be3c1b70" ] ], - "timestamp": "2024-02-09T19:43:20.741062719" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T19:00:10.618213" }, "alignment": { "content": [ @@ -47,7 +63,23 @@ ] ] ], - "timestamp": "2024-02-09T19:42:52.774882703" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T18:59:35.169119" + }, + "versions_uncomp": { + "content": [ + [ + "versions.yml:md5,fb187c9186b50a8076d08cd3be3c1b70" + ] + ], + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T18:59:35.2062" }, "alignment_guidetree": { "content": [ @@ -60,6 +92,10 @@ ] ] ], - "timestamp": "2024-02-09T19:43:20.688201033" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T19:00:10.611489" } } \ No newline at end of file diff --git a/modules/nf-core/untar/tests/main.nf.test b/modules/nf-core/untar/tests/main.nf.test index 679e83c7849..2a7c97bf81e 100644 --- a/modules/nf-core/untar/tests/main.nf.test +++ b/modules/nf-core/untar/tests/main.nf.test @@ -3,17 +3,12 @@ nextflow_process { name "Test Process UNTAR" script "../main.nf" process "UNTAR" - tag "modules" tag "modules_nfcore" tag "untar" - test("test_untar") { when { - params { - outdir = "$outputDir" - } process { """ input[0] = [ [], file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/db/kraken2.tar.gz', checkIfExists: true) ] @@ -33,9 +28,6 @@ nextflow_process { test("test_untar_onlyfiles") { when { - params { - outdir = "$outputDir" - } process { """ input[0] = [ [], file(params.modules_testdata_base_path + 'generic/tar/hello.tar.gz', checkIfExists: true) ] diff --git a/modules/nf-core/untar/tests/main.nf.test.snap b/modules/nf-core/untar/tests/main.nf.test.snap index ace42576688..64550292f33 100644 --- a/modules/nf-core/untar/tests/main.nf.test.snap +++ b/modules/nf-core/untar/tests/main.nf.test.snap @@ -12,7 +12,11 @@ ] ] ], - "timestamp": "2023-10-18T11:56:46.878844" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T11:49:41.320643" }, "test_untar": { "content": [ @@ -29,6 +33,10 @@ ] ] ], - "timestamp": "2023-10-18T11:56:08.16574" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T11:49:33.795172" } } \ No newline at end of file diff --git a/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test b/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test index 2a16d1ef298..5f74ed2046d 100644 --- a/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test +++ b/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test @@ -22,9 +22,6 @@ nextflow_workflow { input[1] = [] """ } - params { - outdir = "output" - } } then { diff --git a/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test.snap b/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test.snap index 2123d3f75e5..9972556a8f8 100644 --- a/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test.snap +++ b/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test.snap @@ -3,7 +3,11 @@ "content": [ 19996 ], - "timestamp": "2024-01-11T11:52:21.464438219" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:02:56.176292" }, "test_pe_reads_2_lines": { "content": [ @@ -16,13 +20,21 @@ "GTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACG" ] ], - "timestamp": "2024-01-11T11:52:21.437261931" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:02:56.166207" }, "test_pe_reads_2_size": { "content": [ 2011460 ], - "timestamp": "2024-01-11T11:52:21.44875993" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:02:56.168869" }, "versions": { "content": [ @@ -32,13 +44,21 @@ "versions.yml:md5,9c558ff624585a6eee82a19c8c0136db" ] ], - "timestamp": "2024-01-11T12:11:06.731937323" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T15:19:18.755939" }, "test_pe_reads_1_size": { "content": [ 2011460 ], - "timestamp": "2024-01-11T11:52:21.428267242" + "meta": { + "nf-test": "0.8.4", + "nextflow": "24.01.0" + }, + "timestamp": "2024-02-28T15:19:18.677234" }, "test_se_reads_lines": { "content": [ @@ -51,7 +71,11 @@ "ACGCAGGTGCCAGCAGCCGCGGTAATACGGAGGGAGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGCTTTTCAAGTCAGGGGTGGAAATACCCGGGGCCGTCAACCCGACCG" ] ], - "timestamp": "2024-01-11T11:52:21.45496474" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:02:56.171227" }, "test_pe_reads_1_lines": { "content": [ @@ -64,6 +88,10 @@ "CGTACGAGCACGTCGCGAACCTGTAAAACAGGCAAACTGAGTTGGACGTGTGTTTTCTCGTTGAAACCAGGGACAAGGCTCTCCATCTTACCTTTCGGTCACACCCGGACGAAACCTAGATGTGCTGATGATCGGCTGCAACACGGACGAAACCGTAAGCAGCCTGCAGAAGATAGACGAGTTACTCGTGTCCTGTCAACGACAGTAATTAGTTATTAATTATACTGCGTGAGTGCAC" ] ], - "timestamp": "2024-01-11T11:52:21.400169604" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:02:56.161354" } } \ No newline at end of file diff --git a/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test b/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test index 8ed4310cac4..68718e4f590 100644 --- a/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test +++ b/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test @@ -51,4 +51,4 @@ nextflow_function { ) } } -} \ No newline at end of file +} diff --git a/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test.snap b/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test.snap index db2030f8b0b..e3f0baf4734 100644 --- a/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test.snap +++ b/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test.snap @@ -3,10 +3,18 @@ "content": [ "v9.9.9" ], - "timestamp": "2024-01-19T11:32:36.031083" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:02:05.308243" }, "Test Function checkCondaChannels": { "content": null, - "timestamp": "2024-01-19T11:32:50.456" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:02:12.425833" } } \ No newline at end of file diff --git a/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test b/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test index f7c54bc68f7..ca964ce8e1e 100644 --- a/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test +++ b/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test @@ -11,9 +11,6 @@ nextflow_workflow { test("Should run no inputs") { when { - params { - outdir = "tests/results" - } workflow { """ print_version = false @@ -39,9 +36,6 @@ nextflow_workflow { test("Should print version") { when { - params { - outdir = "tests/results" - } workflow { """ print_version = true @@ -68,19 +62,16 @@ nextflow_workflow { test("Should dump params") { when { - params { - outdir = "$outputDir" - } workflow { """ print_version = false dump_parameters = true - outdir = params.outdir + outdir = 'results' check_conda_channels = false input[0] = false input[1] = true - input[2] = params.outdir + input[2] = outdir input[3] = false """ } @@ -96,19 +87,16 @@ nextflow_workflow { test("Should not create params JSON if no output directory") { when { - params { - outdir = "$outputDir" - } workflow { """ print_version = false dump_parameters = true - outdir = params.outdir + outdir = null check_conda_channels = false input[0] = false input[1] = true - input[2] = null + input[2] = outdir input[3] = false """ } diff --git a/subworkflows/nf-core/utils_nextflow_pipeline/tests/nextflow.config b/subworkflows/nf-core/utils_nextflow_pipeline/tests/nextflow.config index 53574ffec4f..d0a926bf6dd 100644 --- a/subworkflows/nf-core/utils_nextflow_pipeline/tests/nextflow.config +++ b/subworkflows/nf-core/utils_nextflow_pipeline/tests/nextflow.config @@ -6,4 +6,4 @@ manifest { nextflowVersion = '!>=23.04.0' version = '9.9.9' doi = 'https://doi.org/10.5281/zenodo.5070524' -} \ No newline at end of file +} diff --git a/subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test.snap b/subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test.snap index 10f948e629c..1037232c9e4 100644 --- a/subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test.snap +++ b/subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test.snap @@ -1,25 +1,41 @@ { "Test Function checkProfileProvided": { "content": null, - "timestamp": "2024-02-09T15:43:55.145717" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:03:03.360873" }, "Test Function checkConfigProvided": { "content": [ true ], - "timestamp": "2024-01-19T11:34:13.548431224" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:02:59.729647" }, "Test Function nfCoreLogo": { "content": [ "\n\n-\u001b[2m----------------------------------------------------\u001b[0m-\n \u001b[0;32m,--.\u001b[0;30m/\u001b[0;32m,-.\u001b[0m\n\u001b[0;34m ___ __ __ __ ___ \u001b[0;32m/,-._.--~'\u001b[0m\n\u001b[0;34m |\\ | |__ __ / ` / \\ |__) |__ \u001b[0;33m} {\u001b[0m\n\u001b[0;34m | \\| | \\__, \\__/ | \\ |___ \u001b[0;32m\\`-._,-`-,\u001b[0m\n \u001b[0;32m`._,._,'\u001b[0m\n\u001b[0;35m nextflow_workflow v9.9.9\u001b[0m\n-\u001b[2m----------------------------------------------------\u001b[0m-\n" ], - "timestamp": "2024-01-19T11:34:38.840454873" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:03:10.562934" }, "Test Function workflowCitation": { "content": [ "If you use nextflow_workflow for your analysis please cite:\n\n* The pipeline\n https://doi.org/10.5281/zenodo.5070524\n\n* The nf-core framework\n https://doi.org/10.1038/s41587-020-0439-x\n\n* Software dependencies\n https://github.com/nextflow_workflow/blob/master/CITATIONS.md" ], - "timestamp": "2024-01-19T11:34:22.24352016" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:03:07.019761" }, "Test Function without logColours": { "content": [ @@ -73,13 +89,21 @@ "biwhite": "" } ], - "timestamp": "2024-01-19T11:35:04.418416984" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:03:17.969323" }, "Test Function dashedLine": { "content": [ "-\u001b[2m----------------------------------------------------\u001b[0m-" ], - "timestamp": "2024-01-19T11:34:55.420000755" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:03:14.366181" }, "Test Function with logColours": { "content": [ @@ -133,6 +157,10 @@ "biwhite": "\u001b[1;97m" } ], - "timestamp": "2024-01-19T11:35:13.436366565" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:03:21.714424" } } \ No newline at end of file diff --git a/subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test.snap b/subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test.snap index d07ce54c512..859d1030fbf 100644 --- a/subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test.snap +++ b/subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test.snap @@ -10,6 +10,10 @@ ] } ], - "timestamp": "2024-01-19T11:35:22.538940073" + "meta": { + "nf-test": "0.8.4", + "nextflow": "23.10.1" + }, + "timestamp": "2024-02-28T12:03:25.726491" } } \ No newline at end of file diff --git a/subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test b/subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test index 517ee54e48e..5784a33f2f5 100644 --- a/subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test +++ b/subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test @@ -197,4 +197,4 @@ nextflow_workflow { ) } } -} \ No newline at end of file +}