From 8c1ccf202bfd50fc624b24124978ffb5c00c187b Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 23 Dec 2024 11:19:03 -0600 Subject: [PATCH] chore(deps): Manually bump pypints --- modules/nf-core/pints/caller/environment.yml | 2 +- modules/nf-core/pints/caller/main.nf | 4 ++-- modules/nf-core/pints/caller/tests/main.nf.test.snap | 6 +++--- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/modules/nf-core/pints/caller/environment.yml b/modules/nf-core/pints/caller/environment.yml index 510e570e8da..c7a3646c5bf 100644 --- a/modules/nf-core/pints/caller/environment.yml +++ b/modules/nf-core/pints/caller/environment.yml @@ -11,4 +11,4 @@ dependencies: - pip: # FIXME https://github.com/nf-core/modules/issues/5814 # NOTE PINTS isn't adding conda builds and is a few versions behind. # renovate: datasource=pypi depName=pypints - - pypints==1.1.13 + - pypints==1.1.15 diff --git a/modules/nf-core/pints/caller/main.nf b/modules/nf-core/pints/caller/main.nf index 1022339e135..124b1a52e51 100644 --- a/modules/nf-core/pints/caller/main.nf +++ b/modules/nf-core/pints/caller/main.nf @@ -5,8 +5,8 @@ process PINTS_CALLER { conda "${moduleDir}/environment.yml" // NOTE Stopped publishing at 1.1.9 https://quay.io/repository/biocontainers/pypints?tab=tags container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f1/f1a9e30012e1b41baf9acd1ff94e01161138d8aa17f4e97aa32f2dc4effafcd1/data' : - 'community.wave.seqera.io/library/pybedtools_bedtools_htslib_pip_pypints:39699b96998ec5f6' }" + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/3e/3e16d0837ec2c28760a4567b621ec4516bd780dfa8df5601eba73358a814e8c8/data' : + 'community.wave.seqera.io/library/pybedtools_bedtools_htslib_pip_pypints:47d773fa19345f15' }" input: tuple val(meta), path(bam, arity: '1'), val(chr_name) diff --git a/modules/nf-core/pints/caller/tests/main.nf.test.snap b/modules/nf-core/pints/caller/tests/main.nf.test.snap index 54ebe82b620..89bfd713c74 100644 --- a/modules/nf-core/pints/caller/tests/main.nf.test.snap +++ b/modules/nf-core/pints/caller/tests/main.nf.test.snap @@ -3,7 +3,7 @@ "content": [ { "PINTS_CALLER": { - "pints": "1.1.13" + "pints": "1.1.15" } } ], @@ -34,7 +34,7 @@ "test_chr7_1_unidirectional_peaks.bed", { "PINTS_CALLER": { - "pints": "1.1.13" + "pints": "1.1.15" } } ], @@ -67,7 +67,7 @@ "test_all_1_unidirectional_peaks.bed", { "PINTS_CALLER": { - "pints": "1.1.13" + "pints": "1.1.15" } } ],