diff --git a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf
index 1ebada6e0d2e..971c6e285f81 100644
--- a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf
+++ b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf
@@ -181,6 +181,7 @@ workflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS {
         ch_multiqc_files = FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.fastqc_zip
             .mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.trim_zip)
             .mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.trim_log)
+            .mix(FASTQ_FASTQC_UMITOOLS_TRIMGALORE.out.umi_log)
             .mix(ch_multiqc_files)
     }
 
@@ -206,6 +207,7 @@ workflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS {
         ch_multiqc_files = FASTQ_FASTQC_UMITOOLS_FASTP.out.fastqc_raw_zip
             .mix(FASTQ_FASTQC_UMITOOLS_FASTP.out.fastqc_trim_zip)
             .mix(FASTQ_FASTQC_UMITOOLS_FASTP.out.trim_json)
+            .mix(FASTQ_FASTQC_UMITOOLS_FASTP.out.umi_log)
             .mix(ch_multiqc_files)
     }
 
diff --git a/subworkflows/nf-core/fastq_remove_rrna/main.nf b/subworkflows/nf-core/fastq_remove_rrna/main.nf
index 78054695828b..f077c9494f08 100644
--- a/subworkflows/nf-core/fastq_remove_rrna/main.nf
+++ b/subworkflows/nf-core/fastq_remove_rrna/main.nf
@@ -80,6 +80,7 @@ workflow FASTQ_REMOVE_RRNA {
         )
 
         ch_versions = ch_versions.mix(SEQKIT_STATS.out.versions.first())
+        ch_multiqc_files = ch_multiqc_files.mix(SEQKIT_STATS.out.stats)
 
         // Join stats with reads and calculate read length for RiboDetector
         ch_filtered_reads