From d245ffef2927c90b75e8ec95e6ca6198dce76e5a Mon Sep 17 00:00:00 2001 From: Christopher Mohr Date: Mon, 12 Jun 2023 14:42:28 +0000 Subject: [PATCH 1/3] bump version --- CHANGELOG.md | 10 ++++++++++ nextflow.config | 2 +- 2 files changed, 11 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c4a7448..2be5869 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,16 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## v1.1.0dev - [date] + +### `Added` + +### `Fixed` + +### `Dependencies` + +### `Deprecated` + ## v1.0.0 - 2023-06-12 - Femtometre Initial release of nf-core/nanostring, created with the [nf-core](https://nf-co.re/) template. diff --git a/nextflow.config b/nextflow.config index 5bc4a6c..e41d666 100644 --- a/nextflow.config +++ b/nextflow.config @@ -212,7 +212,7 @@ manifest { description = """A Nanostring nCounter analysis pipeline""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '1.0.0' + version = '1.1.0dev' doi = '' } From 78a0c6bfeba0917b5aed7792c31beba995fe061a Mon Sep 17 00:00:00 2001 From: Christopher Mohr Date: Mon, 12 Jun 2023 14:46:18 +0000 Subject: [PATCH 2/3] add zenodo --- README.md | 5 ++--- lib/WorkflowMain.groovy | 5 ++--- 2 files changed, 4 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index f2abad0..dbfc452 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # ![nf-core/nanostring](docs/images/nf-core-nanostring_logo_light.png#gh-light-mode-only) ![nf-core/nanostring](docs/images/nf-core-nanostring_logo_dark.png#gh-dark-mode-only) -[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/nanostring/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX) +[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/nanostring/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.8028303-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.8028303) [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) @@ -83,8 +83,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `# ## Citations - - +If you use nf-core/nanostring for your analysis, please cite it using the following doi: [10.5281/zenodo.8028303](https://doi.org/10.5281/zenodo.8028303) An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file. diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy index d2ba5c2..1b752c3 100755 --- a/lib/WorkflowMain.groovy +++ b/lib/WorkflowMain.groovy @@ -11,9 +11,8 @@ class WorkflowMain { // public static String citation(workflow) { return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" + - // TODO nf-core: Add Zenodo DOI for pipeline after first release - //"* The pipeline\n" + - //" https://doi.org/10.5281/zenodo.XXXXXXX\n\n" + + "* The pipeline\n" + + " https://doi.org/10.5281/zenodo.8028303\n\n" + "* The nf-core framework\n" + " https://doi.org/10.1038/s41587-020-0439-x\n\n" + "* Software dependencies\n" + From 17bb14edab332b9d1b106026c81e788a6859c5b8 Mon Sep 17 00:00:00 2001 From: Christopher Mohr Date: Mon, 12 Jun 2023 14:47:59 +0000 Subject: [PATCH 3/3] format README --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index dbfc452..423010f 100644 --- a/README.md +++ b/README.md @@ -83,7 +83,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `# ## Citations -If you use nf-core/nanostring for your analysis, please cite it using the following doi: [10.5281/zenodo.8028303](https://doi.org/10.5281/zenodo.8028303) +If you use nf-core/nanostring for your analysis, please cite it using the following doi: [10.5281/zenodo.8028303](https://doi.org/10.5281/zenodo.8028303) An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.