From d7c73e3cae23ca6f5f437f64926168f2d385b056 Mon Sep 17 00:00:00 2001 From: subwaystation Date: Wed, 21 Jun 2023 14:14:41 +0200 Subject: [PATCH] configure aws full scale test --- conf/test_full.config | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) diff --git a/conf/test_full.config b/conf/test_full.config index 27442cfa..9992992e 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -17,10 +17,7 @@ params { config_profile_description = 'Full test dataset to check pipeline function' // Input data for full size test - // TODO nf-core: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA) - // TODO nf-core: Give any required params for the test so that command line flags are not needed - input = 'https://raw.githubusercontent.com/nf-core/test-datasets/viralrecon/samplesheet/samplesheet_full_illumina_amplicon.csv' - - // Genome references - genome = 'R64-1-1' + input = 's3://ngi-igenomes/test-data/pangenome/scerevisiae8.fasta.gz' + // additional mandatory parameter + n_haplotypes = 8 }