diff --git a/modules/local/openms/proteinquantifier/main.nf b/modules/local/openms/proteinquantifier/main.nf index 7f557176..b2815d97 100644 --- a/modules/local/openms/proteinquantifier/main.nf +++ b/modules/local/openms/proteinquantifier/main.nf @@ -3,10 +3,9 @@ process PROTEINQUANTIFIER { label 'process_medium' conda "bioconda::openms=2.9.1" - container "${ workflow.containerEngine == 'docker' && !task.ext.singularity_pull_docker_container ? - 'quay.io/biocontainers/openms:2.9.1--h135471a_0' : - 'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' - }" + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' : + 'quay.io/biocontainers/openms:2.9.1--h135471a_0' }" input: path epi_filt_resolve diff --git a/modules/local/openms/proteomicslfq/main.nf b/modules/local/openms/proteomicslfq/main.nf index 5c5c2eac..4c061684 100644 --- a/modules/local/openms/proteomicslfq/main.nf +++ b/modules/local/openms/proteomicslfq/main.nf @@ -3,10 +3,9 @@ process PROTEOMICSLFQ { label 'process_high' conda "bioconda::openms=2.9.1" - container "${ workflow.containerEngine == 'docker' && !task.ext.singularity_pull_docker_container ? - 'quay.io/biocontainers/openms:2.9.1--h135471a_0' : - 'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' - }" + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' : + 'quay.io/biocontainers/openms:2.9.1--h135471a_0' }" input: path(mzmls)