From 93b47320e3190a9e3b8c929ebb0fd8182bab8bb5 Mon Sep 17 00:00:00 2001
From: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com>
Date: Mon, 4 Sep 2023 09:10:55 +0200
Subject: [PATCH 1/3] remove duplicate probands and children in meta

---
 workflows/raredisease.nf | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/workflows/raredisease.nf b/workflows/raredisease.nf
index 1d1d8ddd..233699f4 100644
--- a/workflows/raredisease.nf
+++ b/workflows/raredisease.nf
@@ -647,13 +647,16 @@ def create_case_channel(List rows) {
             mother = item.maternal
         }
     }
+    println(probands)
 
     case_info.father       = father
     case_info.mother       = mother
-    case_info.probands     = probands
-    case_info.upd_children = upd_children
+    case_info.probands     = probands.unique()
+    case_info.upd_children = upd_children.unique()
     case_info.id           = rows[0].case_id
 
+    println(case_info)
+
     return case_info
 }
 

From 06f717c526e353da3570f777b9b80f69591d6d26 Mon Sep 17 00:00:00 2001
From: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com>
Date: Mon, 4 Sep 2023 09:14:07 +0200
Subject: [PATCH 2/3] update changelog

---
 CHANGELOG.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index b834f2fe..01f4cca1 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -31,6 +31,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Make target bed file optional for WGS mode (Issue [#375](https://github.com/nf-core/raredisease/issues/375)) [#395](https://github.com/nf-core/raredisease/pull/395)
 - Added constraints to block the pipeline from running CollectWgsMetrics on WES samples [#396](https://github.com/nf-core/raredisease/pull/396)
 - Updated modules from nf-core [#412](https://github.com/nf-core/raredisease/pull/412)
+- If present, remove duplicate entries in probands and upd_children in the meta. [#420](https://github.com/nf-core/raredisease/pull/420)
 
 ### `Updated`
 

From 32418865a1ee0d93fa9ccb8cad0735ed5ca189ce Mon Sep 17 00:00:00 2001
From: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com>
Date: Mon, 4 Sep 2023 09:18:37 +0200
Subject: [PATCH 3/3] Update raredisease.nf

---
 workflows/raredisease.nf | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/workflows/raredisease.nf b/workflows/raredisease.nf
index 233699f4..a3e1050d 100644
--- a/workflows/raredisease.nf
+++ b/workflows/raredisease.nf
@@ -647,7 +647,6 @@ def create_case_channel(List rows) {
             mother = item.maternal
         }
     }
-    println(probands)
 
     case_info.father       = father
     case_info.mother       = mother
@@ -655,8 +654,6 @@ def create_case_channel(List rows) {
     case_info.upd_children = upd_children.unique()
     case_info.id           = rows[0].case_id
 
-    println(case_info)
-
     return case_info
 }