diff --git a/modules/local/starfusion/build/environment.yml b/modules/local/starfusion/build/environment.yml index 77187e8b..eacee484 100644 --- a/modules/local/starfusion/build/environment.yml +++ b/modules/local/starfusion/build/environment.yml @@ -2,4 +2,10 @@ channels: - conda-forge - bioconda dependencies: + - bioconda::dfam=3.7 + - bioconda::hmmer=3.4 + - bioconda::minimap2=2.28 + - bioconda::samtools=1.6 - bioconda::star-fusion=1.14.0 + - bioconda::star=2.7.11a + - bioconda::trinity=2.8.5 diff --git a/modules/local/starfusion/build/main.nf b/modules/local/starfusion/build/main.nf index 15b5517a..05ca3089 100644 --- a/modules/local/starfusion/build/main.nf +++ b/modules/local/starfusion/build/main.nf @@ -3,8 +3,8 @@ process STARFUSION_BUILD { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data': - 'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}" + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f8/f804c086cee338c315fbc51faf0c37de360b047b47c33388716962eb3467b087/data': + 'community.wave.seqera.io/library/dfam_hmmer_minimap2_samtools_pruned:bd39df228dad7086'}" input: tuple val(meta), path(fasta) diff --git a/modules/local/starfusion/detect/environment.yml b/modules/local/starfusion/detect/environment.yml index 77187e8b..eacee484 100644 --- a/modules/local/starfusion/detect/environment.yml +++ b/modules/local/starfusion/detect/environment.yml @@ -2,4 +2,10 @@ channels: - conda-forge - bioconda dependencies: + - bioconda::dfam=3.7 + - bioconda::hmmer=3.4 + - bioconda::minimap2=2.28 + - bioconda::samtools=1.6 - bioconda::star-fusion=1.14.0 + - bioconda::star=2.7.11a + - bioconda::trinity=2.8.5 diff --git a/modules/local/starfusion/detect/main.nf b/modules/local/starfusion/detect/main.nf index 38a88112..84a57d21 100644 --- a/modules/local/starfusion/detect/main.nf +++ b/modules/local/starfusion/detect/main.nf @@ -4,8 +4,8 @@ process STARFUSION { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data': - 'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}" + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f8/f804c086cee338c315fbc51faf0c37de360b047b47c33388716962eb3467b087/data': + 'community.wave.seqera.io/library/dfam_hmmer_minimap2_samtools_pruned:bd39df228dad7086'}" input: tuple val(meta), path(reads), path(junction)