From fbf1c2e6131b8ccf98d6c51bcf290861c6abe89c Mon Sep 17 00:00:00 2001 From: Eva Caceres Date: Mon, 21 Aug 2023 16:27:38 +0200 Subject: [PATCH 1/2] use institutional configs by default --- nextflow.config | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/nextflow.config b/nextflow.config index 0f0bbc88..37cd5c28 100644 --- a/nextflow.config +++ b/nextflow.config @@ -137,11 +137,11 @@ try { // Load nf-core/rnafusion custom profiles from different institutions. // Warning: Uncomment only if a pipeline-specific instititutional config already exists on nf-core/configs! -// try { -// includeConfig "${params.custom_config_base}/pipeline/rnafusion.config" -// } catch (Exception e) { -// System.err.println("WARNING: Could not load nf-core/config/rnafusion profiles: ${params.custom_config_base}/pipeline/rnafusion.config") -// } +try { + includeConfig "${params.custom_config_base}/pipeline/rnafusion.config" +} catch (Exception e) { + System.err.println("WARNING: Could not load nf-core/config/rnafusion profiles: ${params.custom_config_base}/pipeline/rnafusion.config") +} profiles { From 4c277ddaea19f4c9e624deb7ee1b402ba705c89c Mon Sep 17 00:00:00 2001 From: Eva Caceres Date: Mon, 21 Aug 2023 16:54:50 +0200 Subject: [PATCH 2/2] update changelog --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5fb2fd31..04b948cc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Changed +- Use institutional configs by default [#381](https://github.com/nf-core/rnafusion/pull/381) + ### Fixed - Tail trimming for reverse reads [#379](https://github.com/nf-core/rnafusion/pull/379)