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test: Add quantify_salmon to full workflow tests
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edmundmiller committed Oct 11, 2022
1 parent e1258b4 commit a5c3a97
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2 changes: 2 additions & 0 deletions tests/pipeline/test_salmon.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
command: nextflow run main.nf -profile test,docker --pseudo_aligner salmon --skip_qc --skip_alignment --outdir results
tags:
- salmon
- quantify_salmon
- skip_qc
- skip_alignment
- "skip_qc skip_alignment"
Expand All @@ -11,6 +12,7 @@
command: nextflow run main.nf -profile test,docker --salmon_index false --transcript_fasta false --outdir results
tags:
- salmon
- quantify_salmon
- salmon_index
- transcript_fasta
- "salmon_index false transcript_fasta false"

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