From 7524cf024ef70b724e84bb031ce5d3f302ca5e94 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Wed, 16 Oct 2024 13:35:21 +0200 Subject: [PATCH 1/2] disable conda pipeline level tests + update CHANGELOG --- .github/workflows/ci.yml | 22 ++++++++++++++++++++++ CHANGELOG.md | 2 ++ 2 files changed, 24 insertions(+) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ca104aeb7..799254143 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -65,6 +65,28 @@ jobs: profile: "conda" - isMaster: false profile: "singularity" + - profile: "conda" + nf_test_files: default.nf.test + - profile: "conda" + nf_test_files: featurecounts_group_type.nf.test + - profile: "conda" + nf_test_files: hisat2.nf.test + - profile: "conda" + nf_test_files: kallisto.nf.test + - profile: "conda" + nf_test_files: min_mapped_reads.nf.test + - profile: "conda" + nf_test_files: nextflow.config + - profile: "conda" + nf_test_files: remove_ribo_rna.nf.test + - profile: "conda" + nf_test_files: salmon.nf.test + - profile: "conda" + nf_test_files: skip_qc.nf.test + - profile: "conda" + nf_test_files: skip_trimming.nf.test + - profile: "conda" + nf_test_files: star_rsem.nf.test steps: - name: Check out pipeline code uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4 diff --git a/CHANGELOG.md b/CHANGELOG.md index 0db7deb44..d6f846828 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -18,8 +18,10 @@ Special thanks to the following for their contributions to the release: - [PR #1401](https://github.com/nf-core/rnaseq/pull/1401) - Template update for nf-core/tools v3.0.1 - [PR #1405](https://github.com/nf-core/rnaseq/pull/1405) - Fix bad variable name in subworkflow - [PR #1406](https://github.com/nf-core/rnaseq/pull/1406) - Keep only one samplesheetToList +- [PR #1409](https://github.com/nf-core/rnaseq/pull/1409) - Fix manifest DOI text - [PR #1410](https://github.com/nf-core/rnaseq/pull/1410) - Fix issues caused by empty versions from trimming subworkflows - [PR #1412](https://github.com/nf-core/rnaseq/pull/1412) - Reset versions back to 3.16.1 for patch release +- [PR #1414](https://github.com/nf-core/rnaseq/pull/1414) - Disable pipeline level conda tests ### Parameters From 8c13b13583e662a256c3fb82cbd232cd92b65b52 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Wed, 16 Oct 2024 13:36:06 +0200 Subject: [PATCH 2/2] fix PR link --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d6f846828..7e66dbf01 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -21,7 +21,7 @@ Special thanks to the following for their contributions to the release: - [PR #1409](https://github.com/nf-core/rnaseq/pull/1409) - Fix manifest DOI text - [PR #1410](https://github.com/nf-core/rnaseq/pull/1410) - Fix issues caused by empty versions from trimming subworkflows - [PR #1412](https://github.com/nf-core/rnaseq/pull/1412) - Reset versions back to 3.16.1 for patch release -- [PR #1414](https://github.com/nf-core/rnaseq/pull/1414) - Disable pipeline level conda tests +- [PR #1415](https://github.com/nf-core/rnaseq/pull/1415) - Disable pipeline level conda tests ### Parameters