diff --git a/CHANGELOG.md b/CHANGELOG.md
index cacba7c82..d22b296bf 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,10 +3,16 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
-## dev
+## [[3.17.0](https://github.com/nf-core/rnaseq/releases/tag/3.17.0)] - 2024-10-23
### Credits
+Special thanks to the following for their contributions to the release:
+
+- [Maxime Garcia](https://github.com/maxulysse)
+- [Jonathan Manning](https://github.com/pinin4fjords)
+- [Pablo Gonzalez de Aledo](https://github.com/pabloaledo)
+
### Enhancements & fixes
- [PR #1418](https://github.com/nf-core/rnaseq/pull/1418) - Bump versions back to 3.17.0 after release
@@ -14,6 +20,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [PR #1423](https://github.com/nf-core/rnaseq/pull/1423) - Bump STAR version for version with ARM Conda build
- [PR #1424](https://github.com/nf-core/rnaseq/pull/1424) - Patch sortmerna to 4.3.7 for ARM compatibility
- [PR #1425](https://github.com/nf-core/rnaseq/pull/1425) - Add profile for ARM compatibility
+- [PR #1432](https://github.com/nf-core/rnaseq/pull/1432) - Bump versions for 3.17.0 release
## [[3.16.1](https://github.com/nf-core/rnaseq/releases/tag/3.16.1)] - 2024-10-16
diff --git a/nextflow.config b/nextflow.config
index ada872ed7..468792d0f 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -328,7 +328,7 @@ manifest {
description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
mainScript = 'main.nf'
nextflowVersion = '!>=24.04.2'
- version = '3.17.0dev'
+ version = '3.17.0'
doi = 'https://doi.org/10.5281/zenodo.1400710'
}
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index b70ad3971..4165436ac 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -227,7 +227,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
index bbe39ddd6..dfd3f3d2c 100644
--- a/tests/featurecounts_group_type.nf.test.snap
+++ b/tests/featurecounts_group_type.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -221,7 +221,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
index 78d8c3ad4..4b39b7703 100644
--- a/tests/hisat2.nf.test.snap
+++ b/tests/hisat2.nf.test.snap
@@ -44,7 +44,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -224,7 +224,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
index 8aea96806..8bd57f925 100644
--- a/tests/kallisto.nf.test.snap
+++ b/tests/kallisto.nf.test.snap
@@ -56,7 +56,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -294,7 +294,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
index e11236066..bc6454c98 100644
--- a/tests/min_mapped_reads.nf.test.snap
+++ b/tests/min_mapped_reads.nf.test.snap
@@ -134,7 +134,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -1221,7 +1221,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
index 79b4954b9..0a379aea9 100644
--- a/tests/remove_ribo_rna.nf.test.snap
+++ b/tests/remove_ribo_rna.nf.test.snap
@@ -140,7 +140,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -1435,7 +1435,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
index aa517a395..1e6827546 100644
--- a/tests/salmon.nf.test.snap
+++ b/tests/salmon.nf.test.snap
@@ -50,7 +50,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -367,7 +367,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
index 0589bb509..a07a6dd43 100644
--- a/tests/skip_qc.nf.test.snap
+++ b/tests/skip_qc.nf.test.snap
@@ -40,7 +40,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -169,7 +169,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
index 56f9b6eba..a0bfa97e4 100644
--- a/tests/skip_trimming.nf.test.snap
+++ b/tests/skip_trimming.nf.test.snap
@@ -130,7 +130,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
index c396c1a4a..31e9150d8 100644
--- a/tests/star_rsem.nf.test.snap
+++ b/tests/star_rsem.nf.test.snap
@@ -134,7 +134,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
@@ -1314,7 +1314,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.17.0dev"
+ "nf-core/rnaseq": "v3.17.0"
}
},
[
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
index 9b8ee731a..08360f58c 100644
--- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml
+++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -1,5 +1,5 @@
report_comment: >
- This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.
+ This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.
report_section_order:
# Important checks and failures
sample-status: