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Migrate CI tests to nf-test #883

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wants to merge 49 commits into from
Closed

Migrate CI tests to nf-test #883

wants to merge 49 commits into from

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edmundmiller
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Follow up to #546

@edmundmiller edmundmiller self-assigned this Oct 10, 2022
@edmundmiller edmundmiller changed the base branch from master to dev October 10, 2022 09:57
@nf-core nf-core deleted a comment from github-actions bot Oct 10, 2022
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github-actions bot commented Oct 10, 2022 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 05df41c

+| ✅ 153 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.6
  • Run at 2022-11-10 15:05:44

@edmundmiller edmundmiller force-pushed the pytest-workflow-2 branch 2 times, most recently from 4e7f708 to c7fdd29 Compare October 10, 2022 10:50
@edmundmiller edmundmiller mentioned this pull request Oct 10, 2022
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@rhpvorderman rhpvorderman mentioned this pull request Oct 10, 2022
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@edmundmiller edmundmiller changed the title Pytest workflow 2 Migrate CI tests to Pytest workflow Oct 10, 2022
@edmundmiller edmundmiller force-pushed the pytest-workflow-2 branch 2 times, most recently from 11364ad to 8786065 Compare November 7, 2022 16:26
@edmundmiller edmundmiller changed the title Migrate CI tests to Pytest workflow Migrate CI tests to nf-test Nov 7, 2022
@edmundmiller edmundmiller force-pushed the pytest-workflow-2 branch 2 times, most recently from 3d45eea to c18304c Compare November 7, 2022 17:38
@drpatelh drpatelh mentioned this pull request Dec 16, 2022
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@edmundmiller edmundmiller marked this pull request as draft April 21, 2023 13:57
@edmundmiller edmundmiller linked an issue Apr 24, 2023 that may be closed by this pull request
Use nf-test for tests #545
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@drpatelh drpatelh deleted the pytest-workflow-2 branch November 21, 2023 09:45
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@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

@matthdsm matthdsm matthdsm approved these changes

@drpatelh drpatelh Awaiting requested review from drpatelh

@ewels ewels Awaiting requested review from ewels

@mahesh-panchal mahesh-panchal Awaiting requested review from mahesh-panchal

@maxulysse maxulysse Awaiting requested review from maxulysse

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Use nf-test for tests
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@edmundmiller @maxulysse @matthdsm @FriederikeHanssen @sateeshperi