Update modules #1008
nf-core-bot
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pytest-workflow.yml
on: pull_request
Check for changes
4s
Matrix: test
Annotations
50 warnings
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validation_checks docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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validation_checks docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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snpeff docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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snpeff docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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msisensorpro docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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msisensorpro docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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vep docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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merge docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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vep docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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skip_all_qc docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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skip_all_qc docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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save_output_as_bam_only docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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save_mapped_only docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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save_output_as_bam_only docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gatk4/markduplicates docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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merge docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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sentieon/dedup docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gatk4/markduplicates docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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umi docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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bwamem2 docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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sentieon/dedup docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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save_mapped_only docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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tumor_normal_pair docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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tumor_normal_pair docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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bwamem docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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umi docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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bwamem docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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haplotypecaller docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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joint_germline docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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haplotypecaller docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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dragmap docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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dragmap docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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joint_germline docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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cache docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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bwamem2 docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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cache docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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concatenate_vcfs docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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skip_markduplicates docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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sentieon/bwamem docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gatk4_spark docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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skip_markduplicates docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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sentieon/bwamem docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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cnvkit docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gatk4_spark docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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sentieon/haplotyper docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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concatenate_vcfs docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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cnvkit docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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sentieon/haplotyper docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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deepvariant docker NF latest-everything
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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deepvariant docker NF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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