From 1bb57d11581b7f8f97249cc79068c83ce018b9a9 Mon Sep 17 00:00:00 2001 From: Friederike Hanssen Date: Fri, 14 Apr 2023 14:40:03 +0200 Subject: [PATCH] Update subworkflows/local/bam_variant_calling_germline_manta/main.nf Co-authored-by: Maxime U Garcia --- subworkflows/local/bam_variant_calling_germline_manta/main.nf | 1 - 1 file changed, 1 deletion(-) diff --git a/subworkflows/local/bam_variant_calling_germline_manta/main.nf b/subworkflows/local/bam_variant_calling_germline_manta/main.nf index 79ff8d5067..0827052628 100644 --- a/subworkflows/local/bam_variant_calling_germline_manta/main.nf +++ b/subworkflows/local/bam_variant_calling_germline_manta/main.nf @@ -28,7 +28,6 @@ workflow BAM_VARIANT_CALLING_GERMLINE_MANTA { // Only diploid SV should get annotated // add variantcaller to meta map - vcf = diploid_sv_vcf.map{ meta, vcf -> [ meta + [ variantcaller:'manta' ], vcf ] } versions = versions.mix(MANTA_GERMLINE.out.versions)