From bd2392f9d3dde96610126b5203df7d227340bde2 Mon Sep 17 00:00:00 2001 From: Rike Date: Sat, 9 Nov 2024 17:23:56 +0100 Subject: [PATCH] remove variable checksums --- tests/.nftignore | 2 +- tests/start_from_markduplicates.nf.test.snap | 8 ++++---- tests/start_from_preparerecalibration.nf.test.snap | 14 ++++++-------- tests/start_from_recalibration.nf.test.snap | 14 ++++++-------- 4 files changed, 17 insertions(+), 21 deletions(-) diff --git a/tests/.nftignore b/tests/.nftignore index c87b25504f..679fab1193 100644 --- a/tests/.nftignore +++ b/tests/.nftignore @@ -21,6 +21,6 @@ reports/fastqc/**/*_fastqc.{html,zip} reports/markduplicates/**/*.md.cram.metrics reports/snpeff/*/*_snpEff.csv reports/snpeff/*/snpEff_summary.html -reports/vcftools/*.TsTv.qual +reports/vcftools/**/*.TsTv.qual variant_calling/**/*.vcf.{gz,gz.tbi} .DS_Store diff --git a/tests/start_from_markduplicates.nf.test.snap b/tests/start_from_markduplicates.nf.test.snap index fd8368c62d..cf769bfcf4 100644 --- a/tests/start_from_markduplicates.nf.test.snap +++ b/tests/start_from_markduplicates.nf.test.snap @@ -122,7 +122,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T15:43:21.462742" + "timestamp": "2024-11-09T16:15:20.865586" }, "Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step markduplicates --tools null ": { "content": [ @@ -301,7 +301,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T15:40:14.730178" + "timestamp": "2024-11-09T16:12:33.604156" }, "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step markduplicates --skip_tools markduplicates --tools null ": { "content": [ @@ -449,7 +449,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T15:49:42.410431" + "timestamp": "2024-11-09T16:23:55.741166" }, "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step markduplicates --tools null ": { "content": [ @@ -628,6 +628,6 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T15:46:40.565396" + "timestamp": "2024-11-09T16:18:25.238396" } } \ No newline at end of file diff --git a/tests/start_from_preparerecalibration.nf.test.snap b/tests/start_from_preparerecalibration.nf.test.snap index ad25b98ff3..34bb44c643 100644 --- a/tests/start_from_preparerecalibration.nf.test.snap +++ b/tests/start_from_preparerecalibration.nf.test.snap @@ -62,7 +62,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T15:23:55.218456" + "timestamp": "2024-11-09T16:57:10.392231" }, "Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step prepare_recalibration --skip_tools baserecalibrator --tools strelka ": { "content": [ @@ -170,8 +170,7 @@ "vcftools_tstv_by_count.txt:md5,5ca47a28d7ae697981041d8b458ae889", "test.strelka.variants.bcftools_stats.txt:md5,3b37a441393a9329104451f44e56c619", "test.strelka.variants.FILTER.summary:md5,39ff2cc8eb7495a14a6b76e0ab627027", - "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff", - "test.strelka.variants.TsTv.qual:md5,ef2a5a1114778239f81ae40ba2072c7d" + "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff" ], [ @@ -181,7 +180,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T15:25:27.999435" + "timestamp": "2024-11-09T16:58:48.877928" }, "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step prepare_recalibration --skip_tools baserecalibrator --tools strelka ": { "content": [ @@ -289,8 +288,7 @@ "vcftools_tstv_by_count.txt:md5,5ca47a28d7ae697981041d8b458ae889", "test.strelka.variants.bcftools_stats.txt:md5,3b37a441393a9329104451f44e56c619", "test.strelka.variants.FILTER.summary:md5,39ff2cc8eb7495a14a6b76e0ab627027", - "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff", - "test.strelka.variants.TsTv.qual:md5,ef2a5a1114778239f81ae40ba2072c7d" + "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff" ], [ @@ -300,7 +298,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T15:29:52.856068" + "timestamp": "2024-11-09T17:02:51.883814" }, "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step prepare_recalibration --tools null ": { "content": [ @@ -393,6 +391,6 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T15:28:23.622922" + "timestamp": "2024-11-09T17:01:30.130705" } } \ No newline at end of file diff --git a/tests/start_from_recalibration.nf.test.snap b/tests/start_from_recalibration.nf.test.snap index fb7647a249..88a9995819 100644 --- a/tests/start_from_recalibration.nf.test.snap +++ b/tests/start_from_recalibration.nf.test.snap @@ -64,7 +64,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T12:09:15.465092" + "timestamp": "2024-11-09T17:22:03.443847" }, "Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step recalibrate --skip_tools baserecalibrator --tools strelka ": { "content": [ @@ -172,8 +172,7 @@ "vcftools_tstv_by_count.txt:md5,5ca47a28d7ae697981041d8b458ae889", "test.strelka.variants.bcftools_stats.txt:md5,3b37a441393a9329104451f44e56c619", "test.strelka.variants.FILTER.summary:md5,39ff2cc8eb7495a14a6b76e0ab627027", - "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff", - "test.strelka.variants.TsTv.qual:md5,ef2a5a1114778239f81ae40ba2072c7d" + "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff" ], [ @@ -183,7 +182,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T12:07:55.795827" + "timestamp": "2024-11-09T17:20:43.396817" }, "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step recalibrate --skip_tools baserecalibrator --tools strelka ": { "content": [ @@ -291,8 +290,7 @@ "vcftools_tstv_by_count.txt:md5,5ca47a28d7ae697981041d8b458ae889", "test.strelka.variants.bcftools_stats.txt:md5,3b37a441393a9329104451f44e56c619", "test.strelka.variants.FILTER.summary:md5,39ff2cc8eb7495a14a6b76e0ab627027", - "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff", - "test.strelka.variants.TsTv.qual:md5,ef2a5a1114778239f81ae40ba2072c7d" + "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff" ], [ @@ -302,7 +300,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T12:10:30.511453" + "timestamp": "2024-11-09T17:23:40.285914" }, "Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step recalibrate --tools null ": { "content": [ @@ -341,6 +339,6 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-11-09T12:06:34.599974" + "timestamp": "2024-11-09T17:19:08.093003" } } \ No newline at end of file