Merge pull request #383 from maxulysse/dev_changelog

feat: update CHANGELOG

CHANGELOG.md

@@ -9,18 +9,28 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Added
 
-- [#353](https://github.com/nf-core/sarek/pull/353) - Add support for task retries with exit code 247 (exhibited by Picard MarkDuplicates)
+- [#353](https://github.com/nf-core/sarek/pull/353) - Add support for task retries with exit code 247 (exhibited by `Picard MarkDuplicates`)
+- [#354](https://github.com/nf-core/sarek/pull/354) - Add tumor only mode for `Mutect2` and `MSIsensor`
+- [#356](https://github.com/nf-core/sarek/pull/356) - Add `--cf_contamination_adjustment` params to adjust contamination with `Control-FREEC`
+- [#372](https://github.com/nf-core/sarek/pull/372) - Add `--cf_contamination` params to specify contamination value with `Control-FREEC`
 
 ### Changed
 
-- [#333](https://github.com/nf-core/sarek/pull/333) - Bump `Sarek` version to `3.0dev`
+- [#373](https://github.com/nf-core/sarek/pull/373) - Sync `TEMPLATE` with `tools` 1.14
+- [#376](https://github.com/nf-core/sarek/pull/376) - Better logo on Github dark Mode
+- [#383](https://github.com/nf-core/sarek/pull/383) - Update CHANGELOG
 
 ### Fixed
 
+- [#375](https://github.com/nf-core/sarek/pull/375), [#381](https://github.com/nf-core/sarek/pull/381), [#382](https://github.com/nf-core/sarek/pull/382) - Fix bugs due to `TEMPLATE` sync from [#373](https://github.com/nf-core/sarek/pull/373)
+- [#378](https://github.com/nf-core/sarek/pull/378) - Fix `Spark` related issue due to `Docker` settings in `nextflow.config`
+
 ### Deprecated
 
 ### Removed
 
+- [#368](https://github.com/nf-core/sarek/pull/368) - Remove social preview image to use GitHub OpenGraph
+
 ## [2.7](https://github.com/nf-core/sarek/releases/tag/2.7) - Pårte
 
 Pårte is one of the main massif in the Sarek National Park.