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Update public_aws_ecr profile and add test #1113

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wants to merge 4 commits into from
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Update public_aws_ecr profile and add test #1113

wants to merge 4 commits into from

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adamrtalbot
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Changes:

  • Update public_aws_ecr profile to use mulled container
  • Add test for public_aws_ecr profile to "default"

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@adamrtalbot
Update public_aws_ecr profile and add test
c85802d 
Changes:
 - Update public_aws_ecr profile to use mulled container
 - Add test for public_aws_ecr profile to "default"
@maxulysse
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tags need to be added there: https://github.com/nf-core/sarek/blob/dev/tests/config/tags.yml

@maxulysse
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and I feel we should be doing more than just profile test

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github-actions bot commented Jun 15, 2023 •
edited
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nf-core lint overall result: Passed ✅

Posted for pipeline commit 500d361

+| ✅ 154 tests passed       |+
#| ❔   9 tests were ignored |#

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2023-06-15 17:10:00

@adamrtalbot
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and I feel we should be doing more than just profile test

Agreed but I don't want to go too mad. Got a list of "core" tests I could use?

@maxulysse maxulysse mentioned this pull request Jun 16, 2023
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closed in favor of #1118

@maxulysse maxulysse closed this Jun 19, 2023
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@maxulysse maxulysse Awaiting requested review from maxulysse maxulysse is a code owner

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@adamrtalbot @maxulysse