From 7b25cf7647c4516da0b1f8a3cc8d67516e623654 Mon Sep 17 00:00:00 2001 From: asp8200 Date: Mon, 16 Oct 2023 14:27:13 +0000 Subject: [PATCH 1/3] Adding labels to the local modules --- modules/local/add_info_to_vcf/main.nf | 1 + modules/local/build_intervals/main.nf | 1 + modules/local/create_intervals_bed/main.nf | 1 + 3 files changed, 3 insertions(+) diff --git a/modules/local/add_info_to_vcf/main.nf b/modules/local/add_info_to_vcf/main.nf index 875acdff79..ec0ea4c7b6 100644 --- a/modules/local/add_info_to_vcf/main.nf +++ b/modules/local/add_info_to_vcf/main.nf @@ -1,5 +1,6 @@ process ADD_INFO_TO_VCF { tag "$meta.id" + label 'process_low' conda "anaconda::gawk=5.1.0" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? diff --git a/modules/local/build_intervals/main.nf b/modules/local/build_intervals/main.nf index 29a6b5afad..fabda85dde 100644 --- a/modules/local/build_intervals/main.nf +++ b/modules/local/build_intervals/main.nf @@ -1,5 +1,6 @@ process BUILD_INTERVALS { tag "$meta.id" + label 'process_low' conda "anaconda::gawk=5.1.0" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? diff --git a/modules/local/create_intervals_bed/main.nf b/modules/local/create_intervals_bed/main.nf index 4ade5d8b0c..9e221f7ed5 100644 --- a/modules/local/create_intervals_bed/main.nf +++ b/modules/local/create_intervals_bed/main.nf @@ -1,5 +1,6 @@ process CREATE_INTERVALS_BED { tag "$intervals" + label 'process_low' conda "anaconda::gawk=5.1.0" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? From 412a632bdc8851c66eaaf69e12f5c114ed01d216 Mon Sep 17 00:00:00 2001 From: asp8200 Date: Mon, 16 Oct 2023 14:45:23 +0000 Subject: [PATCH 2/3] Update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 07f67f2258..570e655d77 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Fixed - [#1277](https://github.com/nf-core/sarek/pull/1277) - Fix null value issue for Mutect2 joint calling +- [#1287](https://github.com/nf-core/sarek/pull/1287) - Adding label `process_low` to local modules. ### Dependencies From 59b079371a1a6456cc4487c0a866a9f761e9d855 Mon Sep 17 00:00:00 2001 From: asp8200 Date: Mon, 16 Oct 2023 16:58:14 +0000 Subject: [PATCH 3/3] Setting label on local processes to process_single --- CHANGELOG.md | 2 +- modules/local/add_info_to_vcf/main.nf | 2 +- modules/local/build_intervals/main.nf | 2 +- modules/local/create_intervals_bed/main.nf | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 570e655d77..5455b40be7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,7 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Fixed - [#1277](https://github.com/nf-core/sarek/pull/1277) - Fix null value issue for Mutect2 joint calling -- [#1287](https://github.com/nf-core/sarek/pull/1287) - Adding label `process_low` to local modules. +- [#1287](https://github.com/nf-core/sarek/pull/1287) - Adding label `process_single` to local modules. ### Dependencies diff --git a/modules/local/add_info_to_vcf/main.nf b/modules/local/add_info_to_vcf/main.nf index ec0ea4c7b6..f36eb20062 100644 --- a/modules/local/add_info_to_vcf/main.nf +++ b/modules/local/add_info_to_vcf/main.nf @@ -1,6 +1,6 @@ process ADD_INFO_TO_VCF { tag "$meta.id" - label 'process_low' + label 'process_single' conda "anaconda::gawk=5.1.0" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? diff --git a/modules/local/build_intervals/main.nf b/modules/local/build_intervals/main.nf index fabda85dde..8f8f0df23e 100644 --- a/modules/local/build_intervals/main.nf +++ b/modules/local/build_intervals/main.nf @@ -1,6 +1,6 @@ process BUILD_INTERVALS { tag "$meta.id" - label 'process_low' + label 'process_single' conda "anaconda::gawk=5.1.0" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? diff --git a/modules/local/create_intervals_bed/main.nf b/modules/local/create_intervals_bed/main.nf index 9e221f7ed5..26c2689346 100644 --- a/modules/local/create_intervals_bed/main.nf +++ b/modules/local/create_intervals_bed/main.nf @@ -1,6 +1,6 @@ process CREATE_INTERVALS_BED { tag "$intervals" - label 'process_low' + label 'process_single' conda "anaconda::gawk=5.1.0" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?