diff --git a/conf/modules/post_variant_calling.config b/conf/modules/post_variant_calling.config index ee29a656ce..3354d4671f 100644 --- a/conf/modules/post_variant_calling.config +++ b/conf/modules/post_variant_calling.config @@ -17,6 +17,7 @@ process { withName: 'GERMLINE_VCFS_CONCAT'{ + ext.args = { "-a" } ext.when = { params.concatenate_vcfs } publishDir = [ //specify to avoid publishing, overwritten otherwise