fix annotation tests

[maxulysse]

nf-core/sarek pull request

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• This comment contains a description of changes (with reason)
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[maxulysse]

I'll revert the snpeff DB to GRCh37.75 and GRCh38.86

Because even if there are actually files to download for GRCh37.87 and GRCh38.92:

• https://sourceforge.net/projects/snpeff/files/databases/v4_3/snpEff_v4_3_GRCh37.87.zip/download
• https://sourceforge.net/projects/snpeff/files/databases/v4_3/snpEff_v4_3_GRCh38.92.zip/download

I'm getting these errors when I actually try to download them:

> snpEff download -v GRCh38.92
00:00:00	SnpEff version SnpEff 4.3t (build 2017-11-24 10:18), by Pablo Cingolani
00:00:00	Command: 'download'
00:00:00	Reading configuration file 'snpEff.config'. Genome: 'GRCh38.92'
00:00:00	Reading config file: /home/maxime/workspace/nf-core_sarek/snpEff.config
00:00:00	Reading config file: /opt/conda/envs/nf-core-sarek-dev/share/snpeff-4.3.1t-3/snpEff.config
java.lang.RuntimeException: Property: 'GRCh38.92.genome' not found
	at org.snpeff.interval.Genome.<init>(Genome.java:106)
	at org.snpeff.snpEffect.Config.readGenomeConfig(Config.java:681)
	at org.snpeff.snpEffect.Config.readConfig(Config.java:649)
	at org.snpeff.snpEffect.Config.init(Config.java:480)
	at org.snpeff.snpEffect.Config.<init>(Config.java:117)
	at org.snpeff.SnpEff.loadConfig(SnpEff.java:451)
	at org.snpeff.snpEffect.commandLine.SnpEffCmdDownload.runDownloadGenome(SnpEffCmdDownload.java:80)
	at org.snpeff.snpEffect.commandLine.SnpEffCmdDownload.run(SnpEffCmdDownload.java:72)
	at org.snpeff.SnpEff.run(SnpEff.java:1183)
	at org.snpeff.SnpEff.main(SnpEff.java:162)
00:00:02	Logging
00:00:03	Done.

> snpEff download -v GRCh37.87
00:00:00	SnpEff version SnpEff 4.3t (build 2017-11-24 10:18), by Pablo Cingolani
00:00:00	Command: 'download'
00:00:00	Reading configuration file 'snpEff.config'. Genome: 'GRCh37.87'
00:00:00	Reading config file: /home/maxime/workspace/nf-core_sarek/snpEff.config
00:00:00	Reading config file: /opt/conda/envs/nf-core-sarek-dev/share/snpeff-4.3.1t-3/snpEff.config
java.lang.RuntimeException: Property: 'GRCh37.87.genome' not found
	at org.snpeff.interval.Genome.<init>(Genome.java:106)
	at org.snpeff.snpEffect.Config.readGenomeConfig(Config.java:681)
	at org.snpeff.snpEffect.Config.readConfig(Config.java:649)
	at org.snpeff.snpEffect.Config.init(Config.java:480)
	at org.snpeff.snpEffect.Config.<init>(Config.java:117)
	at org.snpeff.SnpEff.loadConfig(SnpEff.java:451)
	at org.snpeff.snpEffect.commandLine.SnpEffCmdDownload.runDownloadGenome(SnpEffCmdDownload.java:80)
	at org.snpeff.snpEffect.commandLine.SnpEffCmdDownload.run(SnpEffCmdDownload.java:72)
	at org.snpeff.SnpEff.run(SnpEff.java:1183)
	at org.snpeff.SnpEff.main(SnpEff.java:162)
00:00:02	Logging
00:00:03	Done.