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More improvments #18

Merged
merged 21 commits into from
Jul 5, 2019
Merged

More improvments #18

merged 21 commits into from
Jul 5, 2019

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maxulysse
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@maxulysse maxulysse commented Jun 26, 2019

  • improve cpu usage
  • use same font for nf-core and sarek in ascii art
  • add --no-reports option for tests + add snpEff,VEP,merge to MULTIPLE test
  • use --no-reports for TravisCI testing
  • add possibility to download other genome for sareksnpeff and sarekvep containers
  • update docs
  • add --no-reports for all tests but MULTIPLE in Jenkins

EDIT:

  • Add params --skip to skip specified QC tools
  • params --noReports is now --skip all
  • Update logo
  • Add logo to MultiQC report

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repo
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Make sure your code lints (nf-core lint .).
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated

Learn more about contributing: https://github.com/nf-core/sarek/tree/master/.github/CONTRIBUTING.md

@maxulysse maxulysse changed the title Nf core dev More improvments Jun 26, 2019
@maxulysse maxulysse merged commit 0d66968 into nf-core:dev Jul 5, 2019
@maxulysse maxulysse deleted the nf-core-dev branch July 5, 2019 12:30
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